Wall clock time and date at job start Tue Mar 31 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42092 * 108.57884 * 2 1 4 4 O 1.42095 * 108.57596 * 228.97247 * 2 1 3 5 5 C 1.81408 * 101.92113 * 114.48621 * 2 1 3 6 6 C 1.52995 * 109.46817 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.47212 * 179.97438 * 6 5 2 8 8 O 1.21281 * 119.99356 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00297 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63050 * 359.97438 * 9 7 6 11 11 C 1.53188 * 108.77345 * 126.41497 * 10 9 7 12 12 C 1.53038 * 109.31577 * 54.63596 * 11 10 9 13 13 C 1.53043 * 109.53602 * 298.63148 * 12 11 10 14 14 H 1.08997 * 109.50072 * 301.41544 * 13 12 11 15 15 C 1.50704 * 109.49459 * 181.31479 * 13 12 11 16 16 H 1.08000 * 120.00003 * 245.44703 * 15 13 12 17 17 C 1.37875 * 119.99825 * 65.45480 * 15 13 12 18 18 N 1.31516 * 120.00146 * 9.56915 * 17 15 13 19 19 Si 1.86800 * 119.99969 * 189.57584 * 17 15 13 20 20 H 1.48498 * 109.47500 * 94.98905 * 19 17 15 21 21 H 1.48507 * 109.47110 * 214.99019 * 19 17 15 22 22 H 1.48497 * 109.47091 * 334.98521 * 19 17 15 23 23 C 1.46929 * 120.63205 * 180.02562 * 9 7 6 24 24 H 1.09007 * 109.46776 * 305.51173 * 1 2 3 25 25 H 1.09000 * 109.47153 * 65.51164 * 1 2 3 26 26 H 1.09002 * 109.47017 * 185.51555 * 1 2 3 27 27 H 1.09002 * 109.46884 * 60.00087 * 5 2 1 28 28 H 1.08992 * 109.47214 * 300.00051 * 5 2 1 29 29 H 1.09002 * 109.47051 * 60.00521 * 6 5 2 30 30 H 1.09001 * 109.47421 * 299.99978 * 6 5 2 31 31 H 1.09000 * 109.58720 * 246.19939 * 10 9 7 32 32 H 1.09000 * 109.58609 * 6.47938 * 10 9 7 33 33 H 1.09000 * 109.50240 * 294.67907 * 11 10 9 34 34 H 1.09001 * 109.49471 * 174.58659 * 11 10 9 35 35 H 1.09001 * 109.46070 * 178.61064 * 12 11 10 36 36 H 1.09001 * 109.46140 * 58.65145 * 12 11 10 37 37 H 0.97002 * 119.99918 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.58964 * 113.79614 * 23 9 7 39 39 H 1.09006 * 109.58709 * 353.36909 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8195 1.7979 7 6 4.0168 -1.4301 3.1401 8 8 3.1144 -1.7656 3.8776 9 7 5.2980 -1.6033 3.5207 10 6 6.4020 -1.2024 2.6379 11 6 7.3408 -0.2730 3.4134 12 6 7.7871 -0.9656 4.7031 13 6 6.5650 -1.2565 5.5771 14 1 6.0484 -0.3235 5.8024 15 6 7.0087 -1.9093 6.8609 16 1 6.7208 -2.9276 7.0765 17 6 7.7821 -1.2064 7.7603 18 7 7.9761 0.0836 7.5933 19 14 8.5545 -2.0864 9.2157 20 1 9.9436 -2.4844 8.8733 21 1 8.5751 -1.1773 10.3898 22 1 7.7587 -3.2972 9.5413 23 6 5.6174 -2.1977 4.8259 24 1 -0.3633 0.5970 0.8366 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 1.7610 -1.7370 1.6665 28 1 1.7611 -0.1171 2.4043 29 1 4.1335 0.1816 1.7466 30 1 4.1328 -1.4384 1.0089 31 1 6.9498 -2.0870 2.3131 32 1 6.0032 -0.6800 1.7684 33 1 6.8170 0.6508 3.6591 34 1 8.2139 -0.0451 2.8020 35 1 8.4747 -0.3162 5.2448 36 1 8.2891 -1.9016 4.4577 37 1 8.5199 0.5782 8.2263 38 1 6.1013 -3.1633 4.6792 39 1 4.7011 -2.3296 5.4014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701206039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:10 Heat of formation + Delta-G solvation = -116.843260 kcal Electronic energy + Delta-G solvation = -21428.440811 eV Core-core repulsion = 18077.140482 eV Total energy + Delta-G solvation = -3351.300329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.77280 -37.20791 -36.94361 -36.26579 -33.67458 -33.08339 -31.45449 -30.25734 -29.90658 -26.03185 -25.04147 -23.64651 -21.73945 -19.92123 -19.11938 -18.41670 -17.46986 -16.55396 -16.44809 -16.27594 -15.79748 -15.43189 -15.25062 -14.59070 -13.82554 -13.67959 -13.58730 -13.51559 -13.26395 -12.92272 -12.77081 -12.45406 -12.31839 -12.22657 -12.16632 -12.04139 -11.58578 -11.33799 -11.04413 -10.91708 -10.84759 -10.75001 -10.37487 -10.09016 -9.81641 -9.58316 -9.38817 -8.89882 -8.39541 -7.98960 -6.08071 -4.10620 -0.29483 2.46144 2.90525 3.22408 3.27711 3.35440 3.38525 3.55627 3.75637 4.29799 4.40767 4.46453 4.47803 4.72438 4.73816 5.14470 5.24282 5.30794 5.33275 5.38813 5.55461 5.61222 5.71837 6.04193 6.26114 6.32274 6.38840 6.58918 6.72010 6.88213 7.07136 7.20635 7.64052 7.82049 7.92016 7.93907 8.31453 8.51822 8.93058 9.53185 11.00910 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.003358 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.896163 B = 8337.242935 C = 8577.026918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.421 3.579 3 O -0.939 6.939 4 O -0.941 6.941 5 C -0.591 4.591 6 C -0.134 4.134 7 C 0.517 3.483 8 O -0.549 6.549 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.136 4.136 12 C -0.106 4.106 13 C 0.038 3.962 14 H 0.037 0.963 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.117 3.883 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -0.114 -15.403 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.721 4.721 6 C -0.175 4.175 7 C 0.303 3.697 8 O -0.428 6.428 9 N -0.333 5.333 10 C -0.018 4.018 11 C -0.175 4.175 12 C -0.144 4.144 13 C 0.019 3.981 14 H 0.055 0.945 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.004 4.004 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.394 0.160 -15.590 18.738 hybrid contribution -0.018 -0.630 1.449 1.580 sum -10.412 -0.470 -14.141 17.567 Atomic orbital electron populations 1.30248 1.26785 1.11691 1.11737 1.07805 0.78376 0.75813 0.77639 1.93610 1.78967 1.34487 1.86530 1.93598 1.79049 1.67021 1.54165 1.30117 1.04336 1.15004 1.22595 1.21396 0.92962 1.04432 0.98724 1.20075 0.82884 0.79123 0.87668 1.90657 1.45244 1.51972 1.54918 1.48316 1.04747 1.60620 1.19641 1.21810 0.88710 0.98868 0.92406 1.22004 0.98008 0.98751 0.98703 1.21569 1.00825 0.98890 0.93151 1.19005 0.91243 0.95281 0.92608 0.94490 1.21035 1.32559 0.99334 1.02759 0.92443 1.24935 0.96498 0.94584 0.97605 1.69973 1.38788 1.06377 1.37220 0.86613 0.79777 0.79703 0.82130 1.20679 1.21296 1.19818 1.22050 1.00655 0.96546 0.81144 0.85191 0.85338 0.85265 0.84305 0.84169 0.87346 0.87538 0.91522 0.90912 0.92063 0.92183 0.90470 0.94220 0.92949 0.92606 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.94 10.62 101.05 1.07 -1.87 16 2 S 2.42 19.24 5.36 -107.50 -0.58 18.66 16 3 O -0.94 -11.00 18.10 -57.83 -1.05 -12.04 16 4 O -0.94 -10.63 18.10 -57.83 -1.05 -11.68 16 5 C -0.59 -5.33 5.09 37.16 0.19 -5.14 16 6 C -0.13 -1.59 4.05 -27.88 -0.11 -1.70 16 7 C 0.52 8.71 7.70 -10.99 -0.08 8.63 16 8 O -0.55 -10.97 15.39 5.56 0.09 -10.88 16 9 N -0.60 -10.68 2.97 -172.74 -0.51 -11.19 16 10 C 0.11 1.55 6.34 -3.71 -0.02 1.52 16 11 C -0.14 -2.32 6.08 -26.61 -0.16 -2.48 16 12 C -0.11 -2.29 5.02 -26.69 -0.13 -2.43 16 13 C 0.04 0.91 2.12 -91.62 -0.19 0.72 16 14 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 15 C -0.52 -13.86 8.48 -34.44 -0.29 -14.15 16 16 H 0.06 1.52 7.77 -52.49 -0.41 1.11 16 17 C 0.07 1.79 5.19 -17.82 -0.09 1.70 16 18 N -0.89 -24.91 12.17 55.43 0.67 -24.24 16 19 Si 0.89 20.90 29.55 -169.99 -5.02 15.87 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.12 2.46 5.66 -3.69 -0.02 2.44 16 24 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.14 1.09 8.10 -51.92 -0.42 0.67 16 28 H 0.14 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.11 1.16 7.69 -51.93 -0.40 0.76 16 30 H 0.11 1.04 7.94 -51.93 -0.41 0.63 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.89 6.88 -51.93 -0.36 1.53 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -35.90 330.26 -8.35 -44.25 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.03 Total: -0.97 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 0.15 Total: -12.76 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.16 Total: -35.43 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -2.01 Total: -34.60 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.58 Total: 18.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.90 -8.35 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701206039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.594 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds