Wall clock time and date at job start Tue Mar 31 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42092 * 108.57884 * 2 1 4 4 O 1.42095 * 108.57596 * 228.97247 * 2 1 3 5 5 C 1.81408 * 101.92113 * 114.48621 * 2 1 3 6 6 C 1.52995 * 109.46817 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.47212 * 179.97438 * 6 5 2 8 8 O 1.21281 * 119.99356 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00297 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63050 * 359.97438 * 9 7 6 11 11 C 1.53188 * 108.77345 * 126.41497 * 10 9 7 12 12 C 1.53038 * 109.31577 * 54.63596 * 11 10 9 13 13 C 1.53043 * 109.53602 * 298.63148 * 12 11 10 14 14 H 1.08997 * 109.50072 * 301.41544 * 13 12 11 15 15 C 1.50704 * 109.49459 * 181.31479 * 13 12 11 16 16 H 1.08000 * 120.00003 * 245.44703 * 15 13 12 17 17 C 1.37875 * 119.99825 * 65.45480 * 15 13 12 18 18 N 1.31516 * 120.00146 * 9.56915 * 17 15 13 19 19 Si 1.86800 * 119.99969 * 189.57584 * 17 15 13 20 20 H 1.48498 * 109.47500 * 94.98905 * 19 17 15 21 21 H 1.48507 * 109.47110 * 214.99019 * 19 17 15 22 22 H 1.48497 * 109.47091 * 334.98521 * 19 17 15 23 23 C 1.46929 * 120.63205 * 180.02562 * 9 7 6 24 24 H 1.09007 * 109.46776 * 305.51173 * 1 2 3 25 25 H 1.09000 * 109.47153 * 65.51164 * 1 2 3 26 26 H 1.09002 * 109.47017 * 185.51555 * 1 2 3 27 27 H 1.09002 * 109.46884 * 60.00087 * 5 2 1 28 28 H 1.08992 * 109.47214 * 300.00051 * 5 2 1 29 29 H 1.09002 * 109.47051 * 60.00521 * 6 5 2 30 30 H 1.09001 * 109.47421 * 299.99978 * 6 5 2 31 31 H 1.09000 * 109.58720 * 246.19939 * 10 9 7 32 32 H 1.09000 * 109.58609 * 6.47938 * 10 9 7 33 33 H 1.09000 * 109.50240 * 294.67907 * 11 10 9 34 34 H 1.09001 * 109.49471 * 174.58659 * 11 10 9 35 35 H 1.09001 * 109.46070 * 178.61064 * 12 11 10 36 36 H 1.09001 * 109.46140 * 58.65145 * 12 11 10 37 37 H 0.97002 * 119.99918 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.58964 * 113.79614 * 23 9 7 39 39 H 1.09006 * 109.58709 * 353.36909 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8195 1.7979 7 6 4.0168 -1.4301 3.1401 8 8 3.1144 -1.7656 3.8776 9 7 5.2980 -1.6033 3.5207 10 6 6.4020 -1.2024 2.6379 11 6 7.3408 -0.2730 3.4134 12 6 7.7871 -0.9656 4.7031 13 6 6.5650 -1.2565 5.5771 14 1 6.0484 -0.3235 5.8024 15 6 7.0087 -1.9093 6.8609 16 1 6.7208 -2.9276 7.0765 17 6 7.7821 -1.2064 7.7603 18 7 7.9761 0.0836 7.5933 19 14 8.5545 -2.0864 9.2157 20 1 9.9436 -2.4844 8.8733 21 1 8.5751 -1.1773 10.3898 22 1 7.7587 -3.2972 9.5413 23 6 5.6174 -2.1977 4.8259 24 1 -0.3633 0.5970 0.8366 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 1.7610 -1.7370 1.6665 28 1 1.7611 -0.1171 2.4043 29 1 4.1335 0.1816 1.7466 30 1 4.1328 -1.4384 1.0089 31 1 6.9498 -2.0870 2.3131 32 1 6.0032 -0.6800 1.7684 33 1 6.8170 0.6508 3.6591 34 1 8.2139 -0.0451 2.8020 35 1 8.4747 -0.3162 5.2448 36 1 8.2891 -1.9016 4.4577 37 1 8.5199 0.5782 8.2263 38 1 6.1013 -3.1633 4.6792 39 1 4.7011 -2.3296 5.4014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701206039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:09 Heat of formation + Delta-G solvation = -143.877393 kcal Electronic energy + Delta-G solvation = -21429.613099 eV Core-core repulsion = 18077.140482 eV Total energy + Delta-G solvation = -3352.472617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15462 -38.47446 -37.95368 -37.01715 -35.38249 -34.20527 -33.07117 -31.89968 -30.34042 -27.47231 -26.68375 -24.95720 -23.33017 -21.50284 -19.84649 -19.75107 -18.72328 -18.16113 -17.30858 -17.21930 -16.85301 -16.58100 -16.47290 -16.31065 -15.15969 -14.99531 -14.86167 -14.48257 -14.32239 -13.92242 -13.87745 -13.68726 -13.62822 -13.43948 -13.08136 -12.98849 -12.87808 -12.71605 -12.60554 -12.44171 -12.00164 -11.98701 -11.86459 -11.59071 -11.53712 -11.32195 -10.92371 -10.66935 -10.46613 -9.50793 -8.16450 -6.26068 -0.90167 1.40023 1.41255 1.51439 1.60275 1.89077 2.07094 2.43008 2.76797 3.13894 3.17599 3.41651 3.65887 3.86717 4.06145 4.16849 4.20872 4.28443 4.33334 4.39314 4.51973 4.59279 4.61498 4.79989 4.84137 4.91825 4.96840 5.03737 5.08802 5.27383 5.41759 5.53208 5.60596 5.90857 5.99991 6.30699 6.52523 6.84223 7.16616 7.41084 8.91910 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.003358 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.896163 B = 8337.242935 C = 8577.026918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.444 3.556 3 O -0.980 6.980 4 O -0.976 6.976 5 C -0.597 4.597 6 C -0.138 4.138 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.130 4.130 12 C -0.099 4.099 13 C 0.038 3.962 14 H -0.009 1.009 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.018 3.982 18 N -0.916 5.916 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.130 3.870 24 H 0.149 0.851 25 H 0.143 0.857 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.143 0.857 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 -0.709 -17.323 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.629 3.371 3 O -0.977 6.977 4 O -0.973 6.973 5 C -0.725 4.725 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.469 6.469 9 N -0.341 5.341 10 C -0.018 4.018 11 C -0.168 4.168 12 C -0.138 4.138 13 C 0.019 3.981 14 H 0.009 0.991 15 C -0.578 4.578 16 H 0.072 0.928 17 C -0.182 4.182 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.193 1.193 23 C 0.007 3.993 24 H 0.167 0.833 25 H 0.161 0.839 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.161 0.839 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.093 -0.437 -17.531 20.750 hybrid contribution 0.109 -0.435 2.068 2.116 sum -10.984 -0.872 -15.462 18.987 Atomic orbital electron populations 1.30084 1.21577 1.13903 1.13462 1.06990 0.79984 0.74005 0.76110 1.93557 1.81125 1.36309 1.86745 1.93550 1.81085 1.67568 1.55116 1.30206 1.02563 1.16098 1.23678 1.21528 0.95414 1.05011 0.95835 1.20994 0.81895 0.78202 0.89162 1.90630 1.46238 1.53449 1.56556 1.48395 1.06285 1.60694 1.18691 1.22067 0.87630 0.99625 0.92481 1.21930 0.99738 0.98090 0.97080 1.21373 0.98799 0.98875 0.94714 1.18908 0.92583 0.93595 0.93025 0.99066 1.21429 1.32701 0.99362 1.04263 0.92792 1.25701 0.96923 0.95193 1.00342 1.70098 1.39426 1.07654 1.38266 0.85617 0.79123 0.78563 0.78810 1.19711 1.21172 1.19344 1.21580 0.98617 0.96310 0.82790 0.83294 0.83894 0.82987 0.83145 0.83866 0.86057 0.84944 0.89380 0.86794 0.93606 0.88929 0.93995 0.93576 0.92960 0.91792 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.31 10.62 113.37 1.20 -2.11 16 2 S 2.44 33.46 5.36 -56.49 -0.30 33.16 16 3 O -0.98 -21.52 18.10 -127.37 -2.30 -23.83 16 4 O -0.98 -20.08 18.10 -127.37 -2.30 -22.39 16 5 C -0.60 -9.59 5.09 71.98 0.37 -9.23 16 6 C -0.14 -2.97 4.05 29.85 0.12 -2.85 16 7 C 0.51 16.80 7.70 87.66 0.67 17.48 16 8 O -0.59 -23.70 15.39 -3.03 -0.05 -23.75 16 9 N -0.61 -21.25 2.97 -818.81 -2.43 -23.68 16 10 C 0.10 2.79 6.34 86.36 0.55 3.34 16 11 C -0.13 -4.28 6.08 30.67 0.19 -4.09 16 12 C -0.10 -4.35 5.02 30.62 0.15 -4.20 16 13 C 0.04 1.91 2.12 -11.44 -0.02 1.89 16 14 H -0.01 -0.52 8.09 -2.39 -0.02 -0.54 16 15 C -0.54 -29.79 8.48 25.60 0.22 -29.57 16 16 H 0.05 2.94 7.77 -2.91 -0.02 2.91 16 17 C 0.02 0.99 5.19 84.65 0.44 1.43 16 18 N -0.92 -53.26 12.17 21.45 0.26 -53.00 16 19 Si 0.95 43.56 29.55 68.60 2.03 45.59 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.13 5.59 5.66 86.38 0.49 6.08 16 24 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.15 2.04 8.10 -2.39 -0.02 2.02 16 28 H 0.14 2.20 8.10 -2.39 -0.02 2.18 16 29 H 0.12 2.31 7.69 -2.39 -0.02 2.29 16 30 H 0.13 2.16 7.94 -2.39 -0.02 2.14 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.11 2.18 5.93 -2.39 -0.01 2.16 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.04 2.11 6.88 -2.39 -0.02 2.09 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 2.60 7.01 -2.38 -0.02 2.58 16 Total: -1.00 -81.67 330.26 0.30 -81.37 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.03 Total: 8.37 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 4.38 Total: -21.84 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.17 Total: -76.68 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -4.66 Total: -69.96 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.30 Total: 33.16 kcal Total: -81.67 0.30 -81.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701206039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.511 kcal (2) G-P(sol) polarization free energy of solvation -81.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds