Wall clock time and date at job start Tue Mar 31 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 120.00585 * 2 1 4 4 H 1.48507 * 109.47399 * 274.98985 * 3 2 1 5 5 H 1.48498 * 109.47144 * 34.98686 * 3 2 1 6 6 H 1.48496 * 109.47504 * 154.98569 * 3 2 1 7 7 C 1.40143 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 173.71406 * 7 2 1 9 9 C 1.41643 * 120.00180 * 353.71705 * 7 2 1 10 10 O 1.21794 * 119.99847 * 6.25452 * 9 7 2 11 11 N 1.34775 * 120.00099 * 186.26124 * 9 7 2 12 12 C 1.39403 * 119.99907 * 185.13419 * 11 9 7 13 13 C 1.39191 * 120.01331 * 33.25036 * 12 11 9 14 14 C 1.37869 * 119.99307 * 180.02562 * 13 12 11 15 15 C 1.39123 * 120.01200 * 359.97438 * 14 13 12 16 16 N 1.39543 * 119.99322 * 180.02562 * 15 14 13 17 17 C 1.47189 * 110.99886 * 66.84527 * 16 15 14 18 18 C 1.52984 * 108.72826 * 167.63208 * 17 16 15 19 19 N 1.46006 * 110.04164 * 50.29588 * 18 17 16 20 20 C 1.33573 * 122.88230 * 341.73711 * 19 18 17 21 21 O 1.21285 * 118.51680 * 181.77313 * 20 19 18 22 22 C 1.46896 * 111.00387 * 303.95259 * 16 15 14 23 23 C 1.39117 * 120.01137 * 0.29251 * 15 14 13 24 24 C 1.37878 * 120.01373 * 359.45253 * 23 15 14 25 25 H 0.97002 * 119.99415 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00178 * 5.12196 * 11 9 7 27 27 H 1.08002 * 119.99697 * 0.04785 * 13 12 11 28 28 H 1.08005 * 119.99412 * 180.02562 * 14 13 12 29 29 H 1.08997 * 109.59390 * 287.40898 * 17 16 15 30 30 H 1.09009 * 109.59782 * 47.70759 * 17 16 15 31 31 H 1.09001 * 109.37457 * 170.46792 * 18 17 16 32 32 H 1.09004 * 109.37803 * 290.11569 * 18 17 16 33 33 H 0.97000 * 118.53839 * 161.84047 * 19 18 17 34 34 H 1.09004 * 109.38524 * 293.82305 * 22 16 15 35 35 H 1.09006 * 109.38325 * 53.60622 * 22 16 15 36 36 H 1.08003 * 119.99616 * 179.70636 * 23 15 14 37 37 H 1.07998 * 120.01041 * 180.29468 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.3825 2.1072 -1.3948 5 1 1.4946 2.6199 0.8028 6 1 3.5866 1.4119 0.5920 7 6 2.0069 -1.2137 -0.0005 8 1 3.0820 -1.2166 -0.1029 9 6 1.3050 -2.4367 0.1332 10 8 0.0871 -2.4429 0.1340 11 7 1.9848 -3.5936 0.2595 12 6 1.2982 -4.8065 0.2835 13 6 0.1325 -4.9615 -0.4613 14 6 -0.5465 -6.1611 -0.4369 15 6 -0.0666 -7.2169 0.3315 16 7 -0.7539 -8.4311 0.3555 17 6 -0.7004 -9.0935 -0.9579 18 6 -1.1883 -10.5349 -0.8013 19 7 -2.4644 -10.5570 -0.0921 20 6 -2.9056 -9.5299 0.6391 21 8 -3.9630 -9.6459 1.2218 22 6 -2.1502 -8.2377 0.7688 23 6 1.0954 -7.0606 1.0804 24 6 1.7780 -5.8630 1.0524 25 1 -0.4849 0.8401 0.0004 26 1 2.9519 -3.5822 0.3337 27 1 -0.2396 -4.1421 -1.0585 28 1 -1.4508 -6.2815 -1.0151 29 1 -1.3437 -8.5641 -1.6607 30 1 0.3251 -9.0904 -1.3274 31 1 -1.3146 -10.9831 -1.7868 32 1 -0.4513 -11.1070 -0.2375 33 1 -3.0151 -11.3532 -0.1537 34 1 -2.1775 -7.9051 1.8065 35 1 -2.6139 -7.4821 0.1345 36 1 1.4651 -7.8788 1.6805 37 1 2.6826 -5.7432 1.6301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763243532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:24 Heat of formation + Delta-G solvation = -29.262987 kcal Electronic energy + Delta-G solvation = -22126.032003 eV Core-core repulsion = 18675.378240 eV Total energy + Delta-G solvation = -3450.653764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.68101 -39.28561 -37.90238 -36.41130 -34.75589 -33.09074 -32.36388 -30.46049 -29.93522 -28.82274 -26.85036 -25.26528 -23.60464 -22.45592 -21.43320 -19.80174 -19.28838 -17.75092 -17.60295 -16.79680 -16.59423 -16.00700 -15.66234 -15.59815 -14.89542 -14.71942 -14.13029 -13.87074 -13.54658 -13.28405 -13.13995 -12.90831 -12.70924 -12.55584 -12.31484 -11.85806 -11.59584 -11.57704 -11.32369 -11.12828 -10.88990 -10.66762 -10.39742 -10.05192 -9.32266 -9.31191 -8.90943 -8.66135 -8.50447 -7.78806 -7.06173 -6.44812 -4.96759 1.74021 1.94523 2.48747 3.00695 3.08434 3.09084 3.12837 3.65845 3.92961 4.09601 4.41354 4.45934 4.55561 4.61615 4.92233 5.03629 5.18274 5.30265 5.43280 5.45103 5.48076 5.60458 5.64835 5.84498 5.96265 6.15965 6.45636 6.48067 6.52497 6.70153 6.97064 7.03993 7.07905 7.11470 7.18164 7.51922 7.80793 7.96963 8.03900 8.13390 8.74020 9.20822 10.31218 10.51279 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.003144 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.720987 B = 8902.934203 C = 9312.279429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.542 3.458 10 O -0.567 6.567 11 N -0.701 5.701 12 C 0.203 3.797 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.016 3.984 16 N -0.483 5.483 17 C 0.036 3.964 18 C 0.116 3.884 19 N -0.720 5.720 20 C 0.528 3.472 21 O -0.556 6.556 22 C 0.039 3.961 23 C -0.064 4.064 24 C -0.177 4.177 25 H 0.273 0.727 26 H 0.393 0.607 27 H 0.139 0.861 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -16.401 -2.873 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.352 3.648 10 O -0.450 6.450 11 N -0.344 5.344 12 C 0.103 3.897 13 C -0.143 4.143 14 C -0.143 4.143 15 C -0.079 4.079 16 N -0.206 5.206 17 C -0.091 4.091 18 C -0.009 4.009 19 N -0.372 5.372 20 C 0.314 3.686 21 O -0.434 6.434 22 C -0.090 4.090 23 C -0.083 4.083 24 C -0.199 4.199 25 H 0.084 0.916 26 H 0.226 0.774 27 H 0.157 0.843 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.540 -16.335 -2.228 16.558 hybrid contribution 0.422 1.065 -0.585 1.286 sum 1.961 -15.270 -2.813 15.650 Atomic orbital electron populations 1.70008 1.07346 1.27995 1.31927 1.25769 0.94637 1.00759 0.92382 0.86268 0.80337 0.80819 0.78925 1.19562 1.20141 1.18597 1.20031 0.94957 0.90288 1.52125 0.91099 1.17043 0.87563 0.82069 0.78170 1.90668 1.13538 1.85613 1.55178 1.44259 1.09670 1.04480 1.75946 1.18112 0.93129 0.86456 0.92012 1.21220 0.96106 0.97083 0.99858 1.21346 0.99623 0.93803 0.99542 1.18398 0.97433 0.89026 1.03031 1.59997 1.11597 1.21900 1.27088 1.22581 1.02971 0.93349 0.90248 1.21525 0.85049 0.97445 0.96849 1.45521 1.22329 1.18347 1.51037 1.20174 0.85411 0.85463 0.77519 1.90770 1.23857 1.82205 1.46547 1.22409 0.87610 0.94189 1.04834 1.20545 0.93641 0.96582 0.97546 1.20852 1.02931 0.94089 1.02049 0.91569 0.77386 0.84317 0.87160 0.93367 0.88267 0.90162 0.90706 0.76578 0.86558 0.90336 0.86032 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.10 11.75 55.56 0.65 -20.45 16 2 C 0.09 2.31 5.49 -17.35 -0.10 2.21 16 3 Si 0.91 18.90 29.56 -169.99 -5.03 13.88 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.54 -14.27 9.30 -37.57 -0.35 -14.62 16 8 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 9 C 0.54 14.58 7.29 -14.96 -0.11 14.47 16 10 O -0.57 -17.24 12.56 5.10 0.06 -17.17 16 11 N -0.70 -15.12 5.31 -12.41 -0.07 -15.19 16 12 C 0.20 4.03 6.28 -83.71 -0.53 3.50 16 13 C -0.12 -2.45 8.64 -39.36 -0.34 -2.79 16 14 C -0.12 -2.03 8.67 -39.39 -0.34 -2.37 16 15 C 0.02 0.23 4.69 -83.69 -0.39 -0.16 16 16 N -0.48 -5.93 4.69 -172.42 -0.81 -6.73 16 17 C 0.04 0.34 5.25 -3.67 -0.02 0.32 16 18 C 0.12 0.82 7.39 -4.32 -0.03 0.79 16 19 N -0.72 -6.83 5.51 -61.10 -0.34 -7.16 16 20 C 0.53 6.93 7.80 -11.74 -0.09 6.84 16 21 O -0.56 -9.39 17.82 5.55 0.10 -9.29 16 22 C 0.04 0.51 5.40 -5.20 -0.03 0.48 16 23 C -0.06 -0.93 9.96 -39.39 -0.39 -1.32 16 24 C -0.18 -2.86 9.96 -39.36 -0.39 -3.26 16 25 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 26 H 0.39 7.18 8.77 -40.82 -0.36 6.82 16 27 H 0.14 3.27 6.39 -52.49 -0.34 2.93 16 28 H 0.11 1.66 7.07 -52.48 -0.37 1.29 16 29 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 30 H 0.10 0.85 8.03 -51.92 -0.42 0.43 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 3.17 8.84 -40.82 -0.36 2.81 16 34 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.04 6.69 -51.93 -0.35 0.69 16 36 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -33.91 315.06 -8.04 -41.95 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.26 Total: 11.33 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.11 Total: 4.09 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.56 Total: -49.53 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.16 Total: -26.46 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.91 -8.04 -41.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763243532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.688 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds