Wall clock time and date at job start Tue Mar 31 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 120.00585 * 2 1 4 4 H 1.48507 * 109.47399 * 274.98985 * 3 2 1 5 5 H 1.48498 * 109.47144 * 34.98686 * 3 2 1 6 6 H 1.48496 * 109.47504 * 154.98569 * 3 2 1 7 7 C 1.40143 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 173.71406 * 7 2 1 9 9 C 1.41643 * 120.00180 * 353.71705 * 7 2 1 10 10 O 1.21794 * 119.99847 * 6.25452 * 9 7 2 11 11 N 1.34775 * 120.00099 * 186.26124 * 9 7 2 12 12 C 1.39403 * 119.99907 * 185.13419 * 11 9 7 13 13 C 1.39191 * 120.01331 * 33.25036 * 12 11 9 14 14 C 1.37869 * 119.99307 * 180.02562 * 13 12 11 15 15 C 1.39123 * 120.01200 * 359.97438 * 14 13 12 16 16 N 1.39543 * 119.99322 * 180.02562 * 15 14 13 17 17 C 1.47189 * 110.99886 * 66.84527 * 16 15 14 18 18 C 1.52984 * 108.72826 * 167.63208 * 17 16 15 19 19 N 1.46006 * 110.04164 * 50.29588 * 18 17 16 20 20 C 1.33573 * 122.88230 * 341.73711 * 19 18 17 21 21 O 1.21285 * 118.51680 * 181.77313 * 20 19 18 22 22 C 1.46896 * 111.00387 * 303.95259 * 16 15 14 23 23 C 1.39117 * 120.01137 * 0.29251 * 15 14 13 24 24 C 1.37878 * 120.01373 * 359.45253 * 23 15 14 25 25 H 0.97002 * 119.99415 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00178 * 5.12196 * 11 9 7 27 27 H 1.08002 * 119.99697 * 0.04785 * 13 12 11 28 28 H 1.08005 * 119.99412 * 180.02562 * 14 13 12 29 29 H 1.08997 * 109.59390 * 287.40898 * 17 16 15 30 30 H 1.09009 * 109.59782 * 47.70759 * 17 16 15 31 31 H 1.09001 * 109.37457 * 170.46792 * 18 17 16 32 32 H 1.09004 * 109.37803 * 290.11569 * 18 17 16 33 33 H 0.97000 * 118.53839 * 161.84047 * 19 18 17 34 34 H 1.09004 * 109.38524 * 293.82305 * 22 16 15 35 35 H 1.09006 * 109.38325 * 53.60622 * 22 16 15 36 36 H 1.08003 * 119.99616 * 179.70636 * 23 15 14 37 37 H 1.07998 * 120.01041 * 180.29468 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.3825 2.1072 -1.3948 5 1 1.4946 2.6199 0.8028 6 1 3.5866 1.4119 0.5920 7 6 2.0069 -1.2137 -0.0005 8 1 3.0820 -1.2166 -0.1029 9 6 1.3050 -2.4367 0.1332 10 8 0.0871 -2.4429 0.1340 11 7 1.9848 -3.5936 0.2595 12 6 1.2982 -4.8065 0.2835 13 6 0.1325 -4.9615 -0.4613 14 6 -0.5465 -6.1611 -0.4369 15 6 -0.0666 -7.2169 0.3315 16 7 -0.7539 -8.4311 0.3555 17 6 -0.7004 -9.0935 -0.9579 18 6 -1.1883 -10.5349 -0.8013 19 7 -2.4644 -10.5570 -0.0921 20 6 -2.9056 -9.5299 0.6391 21 8 -3.9630 -9.6459 1.2218 22 6 -2.1502 -8.2377 0.7688 23 6 1.0954 -7.0606 1.0804 24 6 1.7780 -5.8630 1.0524 25 1 -0.4849 0.8401 0.0004 26 1 2.9519 -3.5822 0.3337 27 1 -0.2396 -4.1421 -1.0585 28 1 -1.4508 -6.2815 -1.0151 29 1 -1.3437 -8.5641 -1.6607 30 1 0.3251 -9.0904 -1.3274 31 1 -1.3146 -10.9831 -1.7868 32 1 -0.4513 -11.1070 -0.2375 33 1 -3.0151 -11.3532 -0.1537 34 1 -2.1775 -7.9051 1.8065 35 1 -2.6139 -7.4821 0.1345 36 1 1.4651 -7.8788 1.6805 37 1 2.6826 -5.7432 1.6301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763243532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:23 Heat of formation + Delta-G solvation = -56.413818 kcal Electronic energy + Delta-G solvation = -22127.209352 eV Core-core repulsion = 18675.378240 eV Total energy + Delta-G solvation = -3451.831112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73976 -40.72692 -39.40373 -37.74625 -35.94375 -34.82649 -34.19754 -31.82812 -30.81963 -30.29974 -28.55700 -26.50120 -24.52901 -23.87872 -22.92710 -21.45312 -20.21707 -19.43244 -18.72801 -18.06271 -17.74058 -17.61432 -17.13070 -16.68836 -16.18451 -15.80771 -15.72318 -15.23899 -14.80193 -14.64586 -14.55941 -14.36210 -13.99139 -13.79480 -13.52681 -13.25809 -13.08450 -12.84926 -12.70799 -12.67053 -12.43506 -12.17899 -12.03415 -11.14810 -11.05312 -10.71928 -10.13986 -10.00275 -9.75840 -9.67027 -8.64503 -8.41209 -7.02890 0.37200 0.57265 1.38571 1.39725 1.45591 1.56737 2.19964 2.24634 2.34294 2.62026 2.86033 3.02230 3.52229 3.63442 3.83546 3.98771 4.04750 4.15451 4.25156 4.41348 4.48715 4.52562 4.65055 4.74706 4.82219 4.99631 5.10436 5.20461 5.22379 5.56130 5.56769 5.58677 5.76985 5.86590 5.88696 6.17215 6.18363 6.22708 6.50683 6.72464 7.10648 7.39774 8.37039 8.55312 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.003144 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.720987 B = 8902.934203 C = 9312.279429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.031 3.969 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.529 3.471 10 O -0.615 6.615 11 N -0.696 5.696 12 C 0.166 3.834 13 C -0.148 4.148 14 C -0.122 4.122 15 C 0.037 3.963 16 N -0.478 5.478 17 C 0.028 3.972 18 C 0.118 3.882 19 N -0.705 5.705 20 C 0.528 3.472 21 O -0.601 6.601 22 C 0.039 3.961 23 C -0.056 4.056 24 C -0.160 4.160 25 H 0.279 0.721 26 H 0.407 0.593 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -18.490 -2.767 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.601 4.601 8 H 0.110 0.890 9 C 0.339 3.661 10 O -0.503 6.503 11 N -0.340 5.340 12 C 0.068 3.932 13 C -0.170 4.170 14 C -0.143 4.143 15 C -0.057 4.057 16 N -0.200 5.200 17 C -0.098 4.098 18 C -0.005 4.005 19 N -0.356 5.356 20 C 0.315 3.685 21 O -0.483 6.483 22 C -0.091 4.091 23 C -0.075 4.075 24 C -0.182 4.182 25 H 0.089 0.911 26 H 0.243 0.757 27 H 0.110 0.890 28 H 0.136 0.864 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.175 0.825 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.829 -18.522 -2.153 19.036 hybrid contribution -0.292 1.473 -0.667 1.643 sum 3.537 -17.049 -2.821 17.639 Atomic orbital electron populations 1.70169 1.09781 1.29502 1.33498 1.27044 0.95452 1.05251 0.90939 0.84954 0.79042 0.74696 0.79349 1.18572 1.19737 1.16850 1.20575 0.96137 0.90885 1.52479 0.88989 1.17379 0.87216 0.83819 0.77727 1.90628 1.15591 1.86839 1.57219 1.43740 1.10214 1.04059 1.75956 1.18363 0.93783 0.86909 0.94192 1.20973 0.97647 0.97289 1.01098 1.21395 0.99652 0.93187 1.00057 1.18557 0.97074 0.89194 1.00910 1.60131 1.10808 1.20070 1.29040 1.22792 1.04155 0.94420 0.88455 1.21767 0.83929 0.96041 0.98791 1.45493 1.23088 1.17578 1.49479 1.20075 0.84777 0.86009 0.77665 1.90753 1.25737 1.83017 1.48790 1.22327 0.88049 0.94447 1.04232 1.20924 0.92951 0.96754 0.96856 1.21106 1.03444 0.93089 1.00528 0.91111 0.75703 0.89019 0.86361 0.93684 0.86712 0.86486 0.88939 0.75349 0.87589 0.90980 0.82506 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.43 11.75 21.85 0.26 -47.17 16 2 C 0.03 1.68 5.49 85.33 0.47 2.15 16 3 Si 1.00 38.96 29.56 68.60 2.03 40.99 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 7 C -0.57 -30.74 9.30 23.57 0.22 -30.52 16 8 H 0.09 4.41 7.86 -2.91 -0.02 4.38 16 9 C 0.53 29.86 7.29 85.08 0.62 30.48 16 10 O -0.62 -40.03 12.56 -4.65 -0.06 -40.09 16 11 N -0.70 -30.93 5.31 -311.37 -1.65 -32.59 16 12 C 0.17 6.70 6.28 38.40 0.24 6.95 16 13 C -0.15 -6.36 8.64 22.41 0.19 -6.16 16 14 C -0.12 -4.11 8.67 22.40 0.19 -3.92 16 15 C 0.04 1.03 4.69 38.34 0.18 1.21 16 16 N -0.48 -10.50 4.69 -699.41 -3.28 -13.78 16 17 C 0.03 0.44 5.25 86.24 0.45 0.89 16 18 C 0.12 1.16 7.39 86.47 0.64 1.80 16 19 N -0.71 -11.33 5.51 -466.28 -2.57 -13.90 16 20 C 0.53 13.20 7.80 87.70 0.68 13.88 16 21 O -0.60 -20.20 17.82 -3.04 -0.05 -20.25 16 22 C 0.04 0.99 5.40 85.42 0.46 1.45 16 23 C -0.06 -1.45 9.96 22.40 0.22 -1.23 16 24 C -0.16 -4.87 9.96 22.42 0.22 -4.65 16 25 H 0.28 14.87 8.29 -92.71 -0.77 14.10 16 26 H 0.41 14.99 8.77 -92.71 -0.81 14.18 16 27 H 0.09 4.78 6.39 -2.91 -0.02 4.76 16 28 H 0.12 3.67 7.07 -2.91 -0.02 3.65 16 29 H 0.04 0.76 7.90 -2.39 -0.02 0.74 16 30 H 0.11 1.49 8.03 -2.38 -0.02 1.47 16 31 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.41 5.31 8.84 -92.71 -0.82 4.49 16 34 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 35 H 0.07 1.91 6.69 -2.38 -0.02 1.89 16 36 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -79.77 315.06 -1.04 -80.81 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.50 Total: 33.66 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 4.80 Total: 12.32 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -7.25 Total: -107.43 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -0.11 Total: -60.34 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -79.77 -1.04 -80.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763243532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.393 kcal (2) G-P(sol) polarization free energy of solvation -79.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds