Wall clock time and date at job start Tue Mar 31 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47244 * 300.37729 * 3 2 1 5 5 N 1.46498 * 109.47308 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00385 * 275.29304 * 5 4 3 7 7 C 1.50689 * 109.47211 * 269.99712 * 6 5 4 8 8 H 1.08002 * 120.00064 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99941 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00179 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99931 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47291 * 59.99837 * 11 9 7 13 13 H 1.48498 * 109.47059 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47150 * 299.99736 * 11 9 7 15 15 C 1.34788 * 119.99855 * 95.29178 * 5 4 3 16 16 O 1.21276 * 119.99985 * 185.44307 * 15 5 4 17 17 C 1.50704 * 119.99423 * 5.44328 * 15 5 4 18 18 H 1.08995 * 109.47250 * 319.93347 * 17 15 5 19 19 O 1.42908 * 109.46601 * 199.93363 * 17 15 5 20 20 C 1.50698 * 109.47136 * 79.93407 * 17 15 5 21 21 C 1.38669 * 120.41774 * 253.83107 * 20 17 15 22 22 C 1.38625 * 118.42173 * 180.27961 * 21 20 17 23 23 C 1.38232 * 119.16015 * 0.02562 * 22 21 20 24 24 N 1.31858 * 120.76314 * 359.97438 * 23 22 21 25 25 C 1.31876 * 121.72460 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46806 * 180.37724 * 3 2 1 27 27 H 1.09004 * 109.47304 * 60.38313 * 3 2 1 28 28 H 1.09004 * 109.47224 * 60.00251 * 4 3 2 29 29 H 1.08999 * 109.47366 * 300.00041 * 4 3 2 30 30 H 1.08994 * 109.46836 * 30.00361 * 6 5 4 31 31 H 1.09003 * 109.46688 * 149.99801 * 6 5 4 32 32 H 0.97005 * 120.00299 * 179.97438 * 10 9 7 33 33 H 0.96698 * 113.99740 * 300.00362 * 19 17 15 34 34 H 1.07999 * 120.79354 * 0.27402 * 21 20 17 35 35 H 1.08003 * 120.42399 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.61787 * 180.02562 * 23 22 21 37 37 H 1.08004 * 119.62130 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7285 1.2444 5 7 4.5833 -0.7284 1.2441 6 6 5.3158 -1.7591 0.5043 7 6 5.5674 -2.9408 1.4050 8 1 5.2163 -2.9258 2.4262 9 6 6.2448 -4.0416 0.9250 10 7 6.6718 -4.0601 -0.3187 11 14 6.5559 -5.5067 2.0413 12 1 5.2584 -6.0588 2.5067 13 1 7.2986 -6.5514 1.2914 14 1 7.3589 -5.0744 3.2133 15 6 5.2573 0.2201 1.9245 16 8 6.4659 0.2802 1.8447 17 6 4.5088 1.2058 2.7843 18 1 3.5944 1.5107 2.2756 19 8 5.3289 2.3525 3.0183 20 6 4.1600 0.5605 4.1008 21 6 2.8557 0.1737 4.3693 22 6 2.5800 -0.4106 5.5957 23 6 3.6070 -0.5865 6.5041 24 7 4.8359 -0.2064 6.2146 25 6 5.1348 0.3518 5.0577 26 1 2.9708 1.0285 0.0068 27 1 2.9716 -0.5071 -0.8934 28 1 2.7555 -1.7564 1.2376 29 1 2.7548 -0.2208 2.1378 30 1 4.7267 -2.0767 -0.3559 31 1 6.2681 -1.3534 0.1627 32 1 7.1487 -4.8344 -0.6563 33 1 6.1614 2.1553 3.4689 34 1 2.0732 0.3242 3.6403 35 1 1.5753 -0.7237 5.8389 36 1 3.4006 -1.0414 7.4616 37 1 6.1531 0.6499 4.8561 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764870711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:06 Heat of formation + Delta-G solvation = -17.099129 kcal Electronic energy + Delta-G solvation = -23003.401992 eV Core-core repulsion = 19553.275693 eV Total energy + Delta-G solvation = -3450.126299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75077 -39.24298 -37.11963 -36.42148 -35.36411 -33.12103 -32.66847 -31.53407 -30.95548 -28.31661 -26.42437 -24.32145 -23.57200 -23.30610 -22.06180 -19.20916 -17.90169 -17.62101 -17.23914 -16.74945 -16.45625 -16.16470 -15.84453 -14.83084 -14.66144 -14.37685 -14.35663 -13.91543 -13.77074 -13.51989 -13.40971 -13.16631 -12.61543 -12.49029 -12.40552 -12.26685 -11.89386 -11.69179 -11.34908 -11.10199 -10.96879 -10.95880 -10.67998 -10.26789 -10.00547 -9.80625 -9.51451 -9.36083 -8.77456 -8.53629 -7.99073 -6.15744 -4.21050 0.96753 1.18060 2.63211 2.74009 2.99411 3.25624 3.30768 3.33609 3.45672 3.71697 4.04940 4.31081 4.35451 4.41369 4.60417 4.63861 4.72434 4.83984 4.91523 4.97561 5.04377 5.19638 5.23888 5.33905 5.45395 5.65341 5.71193 5.92143 5.99707 6.06115 6.56914 6.78130 7.23246 7.30274 7.44204 7.49660 7.79364 7.89916 8.06699 8.09009 8.62760 8.84327 9.44877 10.92294 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.006936 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.157380 B = 4035.798384 C = 5132.214564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.053 4.053 4 C 0.107 3.893 5 N -0.588 5.588 6 C 0.243 3.757 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.488 3.512 16 O -0.523 6.523 17 C 0.133 3.867 18 H 0.124 0.876 19 O -0.534 6.534 20 C -0.162 4.162 21 C -0.063 4.063 22 C -0.170 4.170 23 C 0.100 3.900 24 N -0.479 5.479 25 C 0.122 3.878 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 9.097 7.102 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.019 4.019 5 N -0.320 5.320 6 C 0.125 3.875 7 C -0.570 4.570 8 H 0.074 0.926 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.273 3.727 16 O -0.399 6.399 17 C 0.070 3.930 18 H 0.142 0.858 19 O -0.340 6.340 20 C -0.165 4.165 21 C -0.089 4.089 22 C -0.190 4.190 23 C -0.057 4.057 24 N -0.187 5.187 25 C -0.035 4.035 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.928 9.174 7.236 14.705 hybrid contribution 0.286 -1.266 0.118 1.303 sum -8.641 7.908 7.354 13.831 Atomic orbital electron populations 1.81218 1.12942 1.09089 1.08682 1.29070 0.95055 0.92934 0.93185 1.19895 0.81447 1.04654 1.03403 1.21536 0.82373 1.02577 0.95382 1.48185 1.04840 1.28795 1.50184 1.19402 0.92754 0.84166 0.91177 1.21324 1.37154 1.00386 0.98183 0.92551 1.24893 0.95185 0.98542 0.95139 1.69900 1.37959 1.30609 1.14525 0.86599 0.78469 0.81912 0.80743 1.20228 1.21067 1.20122 1.20925 0.88514 0.82094 0.81158 1.90705 1.13686 1.71834 1.63687 1.20736 0.94873 0.86321 0.91112 0.85817 1.86575 1.35271 1.30205 1.81957 1.21201 0.95362 1.02301 0.97620 1.21446 0.95596 0.95113 0.96733 1.22112 1.01204 1.00911 0.94751 1.22833 0.88091 0.95413 0.99347 1.67721 1.21371 1.09830 1.19815 1.22535 0.99325 0.93244 0.88429 0.87279 0.86127 0.88574 0.90643 0.94525 0.93281 0.92505 0.76533 0.84472 0.84493 0.82677 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.15 18.54 42.15 0.78 -5.37 16 2 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 3 C -0.05 -0.53 6.02 -29.52 -0.18 -0.70 16 4 C 0.11 1.37 5.05 -4.05 -0.02 1.34 16 5 N -0.59 -10.33 2.46 -175.07 -0.43 -10.76 16 6 C 0.24 5.60 5.22 -5.20 -0.03 5.57 16 7 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 11 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.49 8.65 6.84 -10.98 -0.08 8.57 16 16 O -0.52 -11.48 15.88 -13.51 -0.21 -11.69 16 17 C 0.13 1.77 2.90 -29.03 -0.08 1.69 16 18 H 0.12 1.30 6.73 -51.93 -0.35 0.96 16 19 O -0.53 -7.19 13.03 -54.30 -0.71 -7.90 16 20 C -0.16 -2.13 4.82 -104.48 -0.50 -2.63 16 21 C -0.06 -0.70 8.67 -39.28 -0.34 -1.04 16 22 C -0.17 -1.78 10.11 -39.44 -0.40 -2.17 16 23 C 0.10 1.18 11.18 -17.54 -0.20 0.99 16 24 N -0.48 -6.98 10.36 -13.25 -0.14 -7.12 16 25 C 0.12 1.75 10.40 -17.55 -0.18 1.56 16 26 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 29 H 0.08 0.80 2.97 -51.93 -0.15 0.65 16 30 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.05 1.30 7.35 -51.93 -0.38 0.92 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.38 4.58 7.33 45.56 0.33 4.92 16 34 H 0.14 1.17 6.52 -52.49 -0.34 0.83 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.16 2.09 7.06 -52.48 -0.37 1.72 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -33.69 328.58 -6.13 -39.81 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.34 Total: 3.55 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.75 Total: 2.75 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.95 Total: -47.55 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.92 Total: -19.59 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.69 -6.13 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764870711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.715 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds