Wall clock time and date at job start Tue Mar 31 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47142 * 136.57810 * 3 2 1 5 5 N 1.46504 * 109.47317 * 180.02562 * 4 3 2 6 6 C 1.46496 * 120.00230 * 88.99105 * 5 4 3 7 7 C 1.50699 * 109.46787 * 89.99960 * 6 5 4 8 8 H 1.07998 * 120.00367 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99612 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00499 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99804 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47060 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47259 * 119.99655 * 11 9 7 14 14 H 1.48499 * 109.46803 * 239.99802 * 11 9 7 15 15 C 1.34784 * 119.99831 * 268.99527 * 5 4 3 16 16 O 1.21276 * 119.99511 * 184.85576 * 15 5 4 17 17 C 1.50694 * 119.99994 * 4.85798 * 15 5 4 18 18 H 1.08998 * 109.47575 * 37.22885 * 17 15 5 19 19 O 1.42899 * 109.46959 * 157.22914 * 17 15 5 20 20 C 1.50699 * 109.46851 * 277.22509 * 17 15 5 21 21 C 1.38674 * 120.41793 * 107.91198 * 20 17 15 22 22 C 1.38626 * 118.42082 * 179.97438 * 21 20 17 23 23 C 1.38223 * 119.16439 * 0.02562 * 22 21 20 24 24 N 1.31864 * 120.76356 * 359.97438 * 23 22 21 25 25 C 1.31887 * 121.72027 * 359.71048 * 24 23 22 26 26 H 1.09004 * 109.47528 * 16.58204 * 3 2 1 27 27 H 1.09001 * 109.47302 * 256.57702 * 3 2 1 28 28 H 1.09000 * 109.46891 * 60.00191 * 4 3 2 29 29 H 1.08996 * 109.47326 * 300.00369 * 4 3 2 30 30 H 1.08994 * 109.47530 * 210.00377 * 6 5 4 31 31 H 1.09002 * 109.46709 * 330.00394 * 6 5 4 32 32 H 0.97004 * 120.00330 * 180.02562 * 10 9 7 33 33 H 0.96700 * 114.00008 * 59.99809 * 19 17 15 34 34 H 1.07998 * 120.79237 * 359.97438 * 21 20 17 35 35 H 1.08002 * 120.42025 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.62257 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.61465 * 180.31230 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0486 -0.9915 5 7 4.5825 1.0489 -0.9920 6 6 5.3149 0.1610 -1.8983 7 6 5.5655 0.8714 -3.2036 8 1 5.2147 1.8831 -3.3438 9 6 6.2427 0.2295 -4.2187 10 7 6.6703 -1.0023 -4.0479 11 14 6.5539 1.1103 -5.8365 12 1 5.9766 2.4771 -5.7750 13 1 8.0164 1.2007 -6.0775 14 1 5.9157 0.3531 -6.9430 15 6 5.2566 1.8659 -0.1585 16 8 6.4660 1.9309 -0.2198 17 6 4.5073 2.6986 0.8495 18 1 3.6651 2.1268 1.2391 19 8 5.3828 3.0485 1.9233 20 6 3.9992 3.9530 0.1866 21 6 2.6470 4.1085 -0.0787 22 6 2.2249 5.2792 -0.6895 23 6 3.1592 6.2455 -1.0118 24 7 4.4376 6.0635 -0.7445 25 6 4.8740 4.9653 -0.1590 26 1 2.9718 -0.9841 -0.2933 27 1 2.9712 0.2394 0.9996 28 1 2.7537 2.0334 -0.6983 29 1 2.7543 0.8100 -1.9911 30 1 6.2675 -0.1146 -1.4459 31 1 4.7259 -0.7378 -2.0811 32 1 7.1471 -1.4537 -4.7620 33 1 6.1564 3.5599 1.6493 34 1 1.9395 3.3360 0.1841 35 1 1.1792 5.4344 -0.9106 36 1 2.8385 7.1603 -1.4882 37 1 5.9280 4.8539 0.0487 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764870726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:08 Heat of formation + Delta-G solvation = -16.569137 kcal Electronic energy + Delta-G solvation = -23001.977761 eV Core-core repulsion = 19551.874443 eV Total energy + Delta-G solvation = -3450.103317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79768 -39.25148 -37.13061 -36.44041 -35.37100 -33.15309 -32.66770 -31.56210 -30.97174 -28.28853 -26.45314 -24.31331 -23.63024 -23.30884 -22.07381 -19.25426 -17.89657 -17.64929 -17.27036 -16.76479 -16.47632 -16.15416 -15.84861 -14.84104 -14.70720 -14.39364 -14.34321 -13.89821 -13.80240 -13.46672 -13.45346 -13.22342 -12.62287 -12.51268 -12.41673 -12.29746 -11.91684 -11.71261 -11.36394 -11.07064 -11.01627 -10.93116 -10.70839 -10.25247 -10.01800 -9.76204 -9.54596 -9.38294 -8.78726 -8.53177 -7.99387 -6.14813 -4.19432 0.92802 1.13339 2.61976 2.71407 2.98613 3.24449 3.33011 3.35712 3.45462 3.67475 4.01536 4.28679 4.36473 4.40548 4.59880 4.60996 4.71445 4.80831 4.86742 4.95059 5.04469 5.18748 5.21382 5.33792 5.42063 5.62721 5.69425 5.90205 5.96993 6.02879 6.53179 6.78077 7.22313 7.30062 7.42949 7.47404 7.80724 7.86279 8.06637 8.10183 8.63876 8.86051 9.46411 10.93407 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.006461 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.727372 B = 4332.528365 C = 5262.089505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.215 3.785 3 C -0.055 4.055 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.486 3.514 16 O -0.520 6.520 17 C 0.134 3.866 18 H 0.124 0.876 19 O -0.534 6.534 20 C -0.164 4.164 21 C -0.064 4.064 22 C -0.170 4.170 23 C 0.100 3.900 24 N -0.479 5.479 25 C 0.122 3.878 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 8.003 9.097 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.096 4.096 4 C -0.021 4.021 5 N -0.319 5.319 6 C 0.125 3.875 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.271 3.729 16 O -0.396 6.396 17 C 0.070 3.930 18 H 0.142 0.858 19 O -0.340 6.340 20 C -0.167 4.167 21 C -0.090 4.090 22 C -0.190 4.190 23 C -0.057 4.057 24 N -0.187 5.187 25 C -0.035 4.035 26 H 0.139 0.861 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.354 8.214 9.081 15.409 hybrid contribution 0.308 -0.094 -1.233 1.275 sum -9.046 8.120 7.848 14.469 Atomic orbital electron populations 1.81226 1.12905 1.08791 1.08842 1.29058 0.95044 0.93176 0.93070 1.19947 0.81549 1.04813 1.03301 1.21594 0.82326 0.97715 1.00458 1.48211 1.04832 1.40665 1.38241 1.19417 0.92574 0.88057 0.87427 1.21401 1.36835 1.00422 0.97999 0.92407 1.24903 0.95231 0.94888 0.98858 1.69919 1.38205 1.11540 1.33483 0.86477 0.78209 0.79754 0.83231 1.19813 1.20773 1.20926 1.20929 0.88548 0.81204 0.82251 1.90715 1.13694 1.65359 1.69820 1.20780 0.93163 0.91514 0.87563 0.85850 1.86577 1.38679 1.76795 1.31907 1.21244 0.95180 0.97900 1.02335 1.21438 0.94665 0.97289 0.95592 1.22119 1.01517 0.94814 1.00567 1.22845 0.88449 0.98724 0.95637 1.67739 1.17092 1.22666 1.11227 1.22572 1.00155 0.88358 0.92457 0.86070 0.87387 0.90504 0.88361 0.93498 0.94467 0.92648 0.76499 0.84436 0.84466 0.82640 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.03 18.54 42.16 0.78 -5.25 16 2 C 0.21 2.40 15.43 -20.76 -0.32 2.08 16 3 C -0.05 -0.53 5.87 -29.52 -0.17 -0.71 16 4 C 0.11 1.35 4.96 -4.04 -0.02 1.33 16 5 N -0.59 -10.37 2.46 -175.07 -0.43 -10.80 16 6 C 0.24 5.62 5.13 -5.20 -0.03 5.59 16 7 C -0.53 -13.91 9.39 -34.44 -0.32 -14.24 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 11 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.49 8.61 6.79 -10.98 -0.07 8.53 16 16 O -0.52 -11.46 15.98 -13.23 -0.21 -11.67 16 17 C 0.13 1.76 2.90 -29.04 -0.08 1.67 16 18 H 0.12 1.28 5.78 -51.93 -0.30 0.98 16 19 O -0.53 -7.12 13.07 -54.03 -0.71 -7.82 16 20 C -0.16 -2.10 4.66 -104.48 -0.49 -2.58 16 21 C -0.06 -0.69 8.17 -39.28 -0.32 -1.01 16 22 C -0.17 -1.72 10.11 -39.44 -0.40 -2.11 16 23 C 0.10 1.15 11.18 -17.54 -0.20 0.95 16 24 N -0.48 -6.80 10.36 -13.25 -0.14 -6.94 16 25 C 0.12 1.70 10.37 -17.55 -0.18 1.52 16 26 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.11 0.84 6.94 -51.93 -0.36 0.48 16 28 H 0.08 0.85 3.20 -51.93 -0.17 0.69 16 29 H 0.10 1.35 8.08 -51.93 -0.42 0.94 16 30 H 0.05 1.24 7.49 -51.93 -0.39 0.85 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.39 4.53 7.38 45.56 0.34 4.86 16 34 H 0.14 1.15 6.88 -52.49 -0.36 0.79 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.16 2.07 7.14 -52.49 -0.37 1.70 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -33.86 326.33 -6.04 -39.90 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.27 Total: 3.24 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.70 Total: 2.66 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.95 Total: -47.40 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.92 Total: -19.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.86 -6.04 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764870726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds