Wall clock time and date at job start Tue Mar 31 2020 02:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46935 * 2 1 4 4 C 1.37097 * 119.99714 * 269.66570 * 3 2 1 5 5 H 1.08003 * 120.00089 * 146.11185 * 4 3 2 6 6 C 1.38949 * 120.00197 * 326.10764 * 4 3 2 7 7 N 1.31417 * 120.00085 * 337.36475 * 6 4 3 8 8 Si 1.86805 * 119.99945 * 157.36072 * 6 4 3 9 9 H 1.48497 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46723 * 120.00616 * 8 6 4 11 11 H 1.48494 * 109.46858 * 240.00095 * 8 6 4 12 12 C 1.34772 * 119.99834 * 89.66443 * 3 2 1 13 13 O 1.21296 * 119.99941 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00247 * 359.97438 * 12 3 2 15 15 H 1.08997 * 110.88862 * 307.36638 * 14 12 3 16 16 C 1.54733 * 110.97158 * 71.18912 * 14 12 3 17 17 C 1.51691 * 102.55426 * 93.89158 * 16 14 12 18 18 C 1.47642 * 125.86641 * 195.37275 * 17 16 14 19 19 C 1.40041 * 120.56486 * 179.97438 * 18 17 16 20 20 C 1.38353 * 118.28746 * 179.97438 * 19 18 17 21 21 C 1.38341 * 119.30961 * 359.97438 * 20 19 18 22 22 N 1.31915 * 121.09609 * 0.02562 * 21 20 19 23 23 C 1.31701 * 121.87602 * 359.67448 * 22 21 20 24 24 N 1.29080 * 108.26737 * 15.38842 * 17 16 14 25 25 O 1.41390 * 112.87365 * 0.32466 * 24 17 16 26 26 H 1.09000 * 109.46593 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47033 * 299.99696 * 1 2 3 28 28 H 1.08999 * 109.47266 * 60.00192 * 1 2 3 29 29 H 1.08998 * 109.47033 * 240.00304 * 2 1 3 30 30 H 1.08999 * 109.47266 * 119.99808 * 2 1 3 31 31 H 0.96999 * 119.99981 * 179.97438 * 7 6 4 32 32 H 1.09008 * 110.79601 * 335.62218 * 16 14 12 33 33 H 1.08998 * 110.95918 * 212.23208 * 16 14 12 34 34 H 1.07999 * 120.85470 * 359.95503 * 19 18 17 35 35 H 1.08001 * 120.34043 * 180.02562 * 20 19 18 36 36 H 1.08008 * 119.45783 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.71949 * 180.31693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2533 2.0252 -1.1873 5 1 2.0762 3.0874 -1.2699 6 6 2.7194 1.3113 -2.2845 7 7 3.3481 0.1709 -2.1076 8 14 2.4524 1.9726 -4.0110 9 1 1.7244 3.2648 -3.9390 10 1 3.7669 2.1814 -4.6698 11 1 1.6545 0.9974 -4.7966 12 6 2.2365 2.0189 1.1672 13 8 2.6403 3.1626 1.1672 14 6 1.9776 1.3112 2.4722 15 1 0.9710 0.8936 2.4949 16 6 3.0384 0.2140 2.7272 17 6 4.0686 0.9411 3.5704 18 6 5.4457 0.4819 3.8400 19 6 6.3075 1.2450 4.6375 20 6 7.5878 0.7699 4.8599 21 6 7.9719 -0.4323 4.2934 22 7 7.1387 -1.1304 3.5460 23 6 5.9086 -0.7235 3.3099 24 7 3.5344 2.0300 4.0121 25 8 2.1949 2.1952 3.5907 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6731 -0.3276 -2.8735 32 1 3.4767 -0.1261 1.7889 33 1 2.6090 -0.6231 3.2776 34 1 5.9813 2.1804 5.0676 35 1 8.2797 1.3314 5.4701 36 1 8.9707 -0.8056 4.4658 37 1 5.2539 -1.3253 2.6970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790499019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:03 Heat of formation + Delta-G solvation = 12.541250 kcal Electronic energy + Delta-G solvation = -22983.202760 eV Core-core repulsion = 19534.361764 eV Total energy + Delta-G solvation = -3448.840996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.91689 -40.93513 -39.58710 -37.00805 -35.15097 -34.19541 -33.23727 -31.85619 -31.53776 -31.21216 -27.44155 -25.63526 -25.19288 -24.31686 -23.55957 -21.70271 -20.74546 -18.97327 -18.49133 -18.17869 -17.45054 -17.28846 -16.92752 -16.53737 -16.32235 -15.88694 -15.35411 -15.10980 -14.91292 -14.56448 -14.45177 -14.15051 -14.13284 -13.66383 -13.61242 -13.56140 -13.04992 -12.89169 -12.78303 -12.66413 -12.32544 -12.10962 -12.01197 -11.77259 -11.62029 -10.96553 -10.81134 -10.58648 -10.29389 -9.76664 -9.52897 -8.39415 -6.09662 -0.51018 0.20240 1.11171 1.31413 1.40413 1.52959 1.73052 2.01758 2.25606 2.78508 2.81430 2.86397 2.93992 3.28032 3.38942 3.55347 3.78518 3.81606 3.92721 4.04069 4.13480 4.28279 4.35677 4.42444 4.51701 4.64420 4.69982 4.77226 4.81375 5.01490 5.04857 5.13315 5.32471 5.42104 5.57286 5.60927 6.10309 6.19853 6.47814 6.87114 7.11149 7.36194 7.95555 8.61095 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.005076 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.022503 B = 5514.297565 C = 6210.453242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.077 3.923 3 N -0.435 5.435 4 C -0.346 4.346 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.876 5.876 8 Si 0.977 3.023 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.258 1.258 12 C 0.421 3.579 13 O -0.625 6.625 14 C 0.037 3.963 15 H 0.159 0.841 16 C -0.132 4.132 17 C 0.133 3.867 18 C -0.109 4.109 19 C -0.051 4.051 20 C -0.164 4.164 21 C 0.114 3.886 22 N -0.503 5.503 23 C 0.135 3.865 24 N -0.311 5.311 25 O -0.197 6.197 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.277 0.723 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.178 0.822 36 H 0.197 0.803 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -9.602 10.689 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.045 4.045 3 N -0.154 5.154 4 C -0.474 4.474 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.513 5.513 8 Si 0.801 3.199 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.182 1.182 12 C 0.209 3.791 13 O -0.512 6.512 14 C -0.025 4.025 15 H 0.176 0.824 16 C -0.171 4.171 17 C -0.057 4.057 18 C -0.112 4.112 19 C -0.079 4.079 20 C -0.183 4.183 21 C -0.043 4.043 22 N -0.212 5.212 23 C -0.025 4.025 24 N -0.053 5.053 25 O -0.214 6.214 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.195 0.805 36 H 0.214 0.786 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.607 -8.938 10.871 14.808 hybrid contribution -0.769 1.022 -1.275 1.806 sum 3.838 -7.916 9.596 13.018 Atomic orbital electron populations 1.22110 0.95335 1.02813 1.01249 1.22053 0.94460 0.83008 1.05004 1.43768 1.54898 1.13357 1.03421 1.19351 1.45605 0.94332 0.88072 0.92530 1.25959 0.93412 0.96678 1.03066 1.69912 1.32261 1.16265 1.32844 0.85140 0.78282 0.78696 0.77798 1.20173 1.20438 1.18230 1.21366 0.82612 0.88315 0.86770 1.90519 1.51808 1.21082 1.87786 1.23699 1.03525 0.89495 0.85793 0.82430 1.23130 0.92101 0.99770 1.02068 1.24442 0.95110 0.91485 0.94704 1.18934 0.90034 0.98589 1.03682 1.22018 0.93822 0.98745 0.93298 1.22485 0.96012 0.97994 1.01822 1.23644 1.00084 0.90744 0.89817 1.67824 1.03442 1.34691 1.15202 1.23166 0.92727 0.91944 0.94617 1.78250 0.92560 1.16126 1.18341 1.91189 1.21170 1.63645 1.45394 0.89020 0.92962 0.94206 0.88341 0.89963 0.91290 0.87257 0.82216 0.84239 0.80509 0.78615 0.80836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 10.18 71.98 0.73 -4.29 16 2 C 0.08 3.01 5.22 86.38 0.45 3.46 16 3 N -0.44 -21.76 2.55 -635.53 -1.62 -23.38 16 4 C -0.35 -19.53 8.97 84.04 0.75 -18.78 16 5 H 0.06 3.54 7.71 -2.91 -0.02 3.51 16 6 C 0.01 0.66 4.96 84.93 0.42 1.08 16 7 N -0.88 -44.51 11.29 21.66 0.24 -44.27 16 8 Si 0.98 41.51 29.61 68.60 2.03 43.54 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 12 C 0.42 21.54 6.97 87.66 0.61 22.15 16 13 O -0.63 -39.11 16.41 14.93 0.25 -38.86 16 14 C 0.04 1.41 3.26 30.44 0.10 1.51 16 15 H 0.16 4.84 6.87 -2.39 -0.02 4.83 16 16 C -0.13 -3.97 4.56 30.76 0.14 -3.83 16 17 C 0.13 4.47 7.17 45.76 0.33 4.80 16 18 C -0.11 -3.09 5.89 -20.03 -0.12 -3.21 16 19 C -0.05 -1.26 9.82 22.73 0.22 -1.04 16 20 C -0.16 -2.85 10.10 22.32 0.23 -2.63 16 21 C 0.11 2.04 11.17 84.70 0.95 2.99 16 22 N -0.50 -12.15 10.35 -194.72 -2.01 -14.16 16 23 C 0.13 3.44 10.79 85.04 0.92 4.36 16 24 N -0.31 -12.52 12.19 -42.23 -0.51 -13.03 16 25 O -0.20 -8.55 11.82 -20.30 -0.24 -8.79 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.55 7.13 -2.39 -0.02 1.53 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.10 4.31 5.30 -2.39 -0.01 4.30 16 30 H 0.08 2.62 4.82 -2.39 -0.01 2.61 16 31 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 32 H 0.11 3.52 6.55 -2.38 -0.02 3.51 16 33 H 0.16 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.14 3.47 7.92 -2.91 -0.02 3.44 16 35 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.17 3.85 7.41 -2.91 -0.02 3.83 16 Total: -1.00 -78.97 317.14 4.97 -74.00 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.11 Total: 18.38 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.73 Total: 6.57 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -3.90 Total: -94.84 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: 0.00 Total: -47.65 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -78.97 4.97 -74.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790499019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.542 kcal (2) G-P(sol) polarization free energy of solvation -78.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds