Wall clock time and date at job start Tue Mar 31 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47774 * 2 1 4 4 C 1.37104 * 119.99804 * 274.18483 * 3 2 1 5 5 H 1.07996 * 119.99343 * 184.98428 * 4 3 2 6 6 C 1.38943 * 120.00129 * 4.98028 * 4 3 2 7 7 N 1.31416 * 120.00153 * 14.47564 * 6 4 3 8 8 Si 1.86796 * 119.99949 * 194.47621 * 6 4 3 9 9 H 1.48497 * 109.47330 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47271 * 120.00197 * 8 6 4 11 11 H 1.48503 * 109.47047 * 240.00342 * 8 6 4 12 12 C 1.34769 * 119.99946 * 94.17612 * 3 2 1 13 13 O 1.21299 * 120.00292 * 5.34262 * 12 3 2 14 14 C 1.50705 * 120.00043 * 185.33944 * 12 3 2 15 15 H 1.08997 * 110.86109 * 53.83001 * 14 12 3 16 16 C 1.54737 * 110.97242 * 290.03054 * 14 12 3 17 17 C 1.51690 * 102.55162 * 217.62880 * 16 14 12 18 18 C 1.47639 * 125.86707 * 195.39702 * 17 16 14 19 19 C 1.40044 * 120.56740 * 179.97438 * 18 17 16 20 20 C 1.38343 * 118.28814 * 180.02562 * 19 18 17 21 21 C 1.38346 * 119.31280 * 0.24043 * 20 19 18 22 22 N 1.31915 * 121.08895 * 359.46498 * 21 20 19 23 23 C 1.31698 * 121.87939 * 0.57488 * 22 21 20 24 24 N 1.29086 * 108.26688 * 15.64951 * 17 16 14 25 25 O 1.41386 * 112.87440 * 359.89352 * 24 17 16 26 26 H 1.08993 * 109.47392 * 63.54025 * 1 2 3 27 27 H 1.09002 * 109.47721 * 183.54875 * 1 2 3 28 28 H 1.09006 * 109.46811 * 303.54478 * 1 2 3 29 29 H 1.09008 * 109.46801 * 240.00194 * 2 1 3 30 30 H 1.09000 * 109.47030 * 120.00713 * 2 1 3 31 31 H 0.96996 * 120.00104 * 179.97438 * 7 6 4 32 32 H 1.09000 * 110.79457 * 99.36019 * 16 14 12 33 33 H 1.09007 * 110.79171 * 335.88943 * 16 14 12 34 34 H 1.08006 * 120.85360 * 359.97438 * 19 18 17 35 35 H 1.08003 * 120.34757 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.45773 * 179.74874 * 21 20 19 37 37 H 1.08005 * 119.72047 * 179.70764 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1653 2.0563 -1.1842 5 1 2.6007 3.0446 -1.1918 6 6 1.7541 1.4690 -2.3744 7 7 0.9766 0.4098 -2.3502 8 14 2.3066 2.1849 -4.0089 9 1 3.1700 3.3681 -3.7645 10 1 3.0717 1.1608 -4.7646 11 1 1.1167 2.5954 -4.7969 12 6 2.3233 1.9881 1.1640 13 8 2.2863 1.3621 2.2024 14 6 2.7101 3.4446 1.1757 15 1 1.9527 4.0514 0.6797 16 6 4.0994 3.6538 0.5273 17 6 4.7073 4.7404 1.3937 18 6 5.8892 5.5575 1.0541 19 6 6.3575 6.5354 1.9405 20 6 7.4684 7.2741 1.5745 21 6 8.0726 7.0293 0.3542 22 7 7.6130 6.0975 -0.4587 23 6 6.5587 5.3686 -0.1559 24 7 4.0170 4.8244 2.4812 25 8 2.9419 3.9071 2.5219 26 1 -0.3634 0.4579 -0.9199 27 1 -0.3634 -1.0257 0.0636 28 1 -0.3633 0.5679 0.8566 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.6892 0.0000 -3.1811 32 1 3.9981 3.9924 -0.5039 33 1 4.6922 2.7405 0.5793 34 1 5.8635 6.7089 2.8852 35 1 7.8575 8.0370 2.2325 36 1 8.9376 7.6074 0.0643 37 1 6.2094 4.6182 -0.8496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790499020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:05 Heat of formation + Delta-G solvation = 28.728930 kcal Electronic energy + Delta-G solvation = -22738.308668 eV Core-core repulsion = 19290.169622 eV Total energy + Delta-G solvation = -3448.139046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81453 -40.92114 -39.80642 -37.11401 -35.14295 -33.59404 -33.24047 -32.70626 -31.53131 -30.80984 -26.99952 -25.96563 -25.15737 -24.29809 -23.33061 -21.36534 -21.09507 -19.26651 -18.56517 -17.98056 -17.46097 -17.24071 -16.65590 -16.48558 -16.12834 -15.81998 -15.60754 -15.02752 -14.89633 -14.55729 -14.33109 -14.20952 -14.07921 -13.85197 -13.62814 -13.13977 -12.99034 -12.90104 -12.84075 -12.53071 -12.26196 -12.01207 -11.82060 -11.67595 -11.46192 -10.87634 -10.73270 -10.55959 -10.36893 -9.82334 -9.81072 -8.21240 -5.90627 -0.52328 0.22711 1.08932 1.38615 1.54065 1.64225 1.66265 1.89072 2.29382 2.68656 2.81865 2.95373 3.09966 3.35201 3.44167 3.57832 3.83244 3.89291 3.95607 4.08831 4.21169 4.28663 4.46842 4.59445 4.60573 4.73294 4.80448 4.82271 4.94677 5.07070 5.11142 5.15289 5.36040 5.46266 5.63045 5.73472 5.90502 6.13354 6.45911 6.89455 7.07073 7.46688 7.87880 8.68349 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.005121 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.781740 B = 5466.846269 C = 6854.014027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.134 3.866 3 N -0.432 5.432 4 C -0.359 4.359 5 H 0.122 0.878 6 C -0.002 4.002 7 N -0.876 5.876 8 Si 0.990 3.010 9 H -0.248 1.248 10 H -0.280 1.280 11 H -0.284 1.284 12 C 0.433 3.567 13 O -0.638 6.638 14 C 0.051 3.949 15 H 0.110 0.890 16 C -0.122 4.122 17 C 0.144 3.856 18 C -0.107 4.107 19 C -0.046 4.046 20 C -0.163 4.163 21 C 0.116 3.884 22 N -0.504 5.504 23 C 0.135 3.865 24 N -0.311 5.311 25 O -0.208 6.208 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.003 0.997 29 H 0.099 0.901 30 H 0.025 0.975 31 H 0.272 0.728 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.999 12.619 -2.060 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 N -0.149 5.149 4 C -0.485 4.485 5 H 0.139 0.861 6 C -0.204 4.204 7 N -0.514 5.514 8 Si 0.813 3.187 9 H -0.171 1.171 10 H -0.206 1.206 11 H -0.210 1.210 12 C 0.221 3.779 13 O -0.527 6.527 14 C -0.011 4.011 15 H 0.128 0.872 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.111 4.111 19 C -0.073 4.073 20 C -0.182 4.182 21 C -0.041 4.041 22 N -0.213 5.213 23 C -0.025 4.025 24 N -0.054 5.054 25 O -0.225 6.225 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.117 0.883 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.162 0.838 35 H 0.195 0.805 36 H 0.212 0.788 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 11.989 12.404 -1.351 17.303 hybrid contribution -0.975 -0.646 -0.404 1.238 sum 11.013 11.757 -1.756 16.205 Atomic orbital electron populations 1.22063 0.95712 1.00119 1.00871 1.21355 0.95293 0.82576 0.99605 1.44028 1.53683 1.12113 1.05074 1.20355 1.41775 1.03283 0.83076 0.86062 1.26130 0.94674 0.96873 1.02765 1.70277 1.30336 1.22256 1.28555 0.84898 0.78194 0.78819 0.76756 1.17065 1.20614 1.21040 1.19934 0.85592 0.88622 0.83733 1.90531 1.61671 1.66976 1.33555 1.23227 0.99158 0.94672 0.84016 0.87249 1.22943 0.92385 0.98046 1.02802 1.24446 0.93678 0.93559 0.92948 1.18862 0.94705 0.99012 0.98492 1.22024 0.95012 0.91654 0.98605 1.22487 0.95588 1.01314 0.98837 1.23648 0.98485 0.92334 0.89630 1.67844 1.12092 1.06812 1.34540 1.23194 0.89873 0.96326 0.93058 1.78291 0.98960 1.08079 1.20038 1.91276 1.46365 1.58190 1.26659 0.89256 0.92857 0.97741 0.88347 0.95629 0.91702 0.84213 0.87918 0.83809 0.80495 0.78782 0.80925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 9.61 71.98 0.69 -5.38 16 2 C 0.13 6.65 5.47 86.38 0.47 7.12 16 3 N -0.43 -21.37 2.63 -635.54 -1.67 -23.05 16 4 C -0.36 -16.25 8.98 84.04 0.75 -15.49 16 5 H 0.12 4.86 4.68 -2.91 -0.01 4.84 16 6 C 0.00 -0.08 5.22 84.92 0.44 0.36 16 7 N -0.88 -40.81 7.39 21.66 0.16 -40.65 16 8 Si 0.99 34.67 29.58 68.60 2.03 36.70 16 9 H -0.25 -7.84 7.11 99.48 0.71 -7.14 16 10 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 11 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 12 C 0.43 22.05 7.00 87.66 0.61 22.67 16 13 O -0.64 -37.50 16.08 14.92 0.24 -37.26 16 14 C 0.05 2.15 3.22 30.44 0.10 2.25 16 15 H 0.11 4.37 7.93 -2.39 -0.02 4.35 16 16 C -0.12 -4.06 4.80 30.76 0.15 -3.91 16 17 C 0.14 4.46 7.17 45.76 0.33 4.78 16 18 C -0.11 -2.58 5.89 -20.04 -0.12 -2.70 16 19 C -0.05 -0.90 9.82 22.73 0.22 -0.67 16 20 C -0.16 -2.14 10.10 22.32 0.23 -1.91 16 21 C 0.12 1.64 11.17 84.71 0.95 2.58 16 22 N -0.50 -10.35 10.35 -194.72 -2.01 -12.36 16 23 C 0.13 2.94 10.79 85.03 0.92 3.86 16 24 N -0.31 -11.71 12.19 -42.23 -0.51 -12.22 16 25 O -0.21 -9.54 11.82 -20.30 -0.24 -9.78 16 26 H 0.09 4.37 5.77 -2.39 -0.01 4.36 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.10 4.92 5.97 -2.38 -0.01 4.90 16 30 H 0.03 1.31 7.24 -2.39 -0.02 1.29 16 31 H 0.27 11.96 8.31 -92.71 -0.77 11.19 16 32 H 0.14 3.80 6.59 -2.39 -0.02 3.79 16 33 H 0.10 3.55 7.90 -2.38 -0.02 3.53 16 34 H 0.14 2.80 7.92 -2.91 -0.02 2.77 16 35 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.17 3.33 7.40 -2.91 -0.02 3.31 16 Total: -1.00 -66.80 312.69 4.84 -61.96 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.11 Total: 23.09 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.74 Total: 13.56 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -4.04 Total: -88.27 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: 0.00 Total: -47.04 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Total: -66.80 4.84 -61.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790499020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.691 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds