Wall clock time and date at job start Tue Mar 31 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46904 * 271.35678 * 3 2 1 5 5 N 1.46502 * 109.46703 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99949 * 266.20335 * 5 4 3 7 7 C 1.50703 * 109.47274 * 270.00580 * 6 5 4 8 8 H 1.08000 * 119.99706 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99822 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00108 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99784 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46663 * 90.00260 * 11 9 7 13 13 H 1.48494 * 109.47182 * 210.00024 * 11 9 7 14 14 H 1.48498 * 109.47317 * 330.00716 * 11 9 7 15 15 C 1.34776 * 119.99995 * 86.21261 * 5 4 3 16 16 O 1.21285 * 119.99938 * 185.88129 * 15 5 4 17 17 C 1.50703 * 119.99988 * 5.87264 * 15 5 4 18 18 H 1.08997 * 109.47185 * 321.35435 * 17 15 5 19 19 O 1.42899 * 109.47200 * 201.35603 * 17 15 5 20 20 C 1.50699 * 109.46946 * 81.35792 * 17 15 5 21 21 C 1.38222 * 119.61727 * 124.59054 * 20 17 15 22 22 C 1.38638 * 119.16259 * 180.27821 * 21 20 17 23 23 C 1.38664 * 118.41521 * 359.47997 * 22 21 20 24 24 C 1.38183 * 119.16612 * 0.48123 * 23 22 21 25 25 N 1.31851 * 119.61962 * 304.57407 * 20 17 15 26 26 H 1.08995 * 109.47416 * 151.35266 * 3 2 1 27 27 H 1.09007 * 109.47166 * 31.35061 * 3 2 1 28 28 H 1.08995 * 109.46996 * 59.99917 * 4 3 2 29 29 H 1.08998 * 109.46457 * 299.99661 * 4 3 2 30 30 H 1.08998 * 109.46830 * 30.00399 * 6 5 4 31 31 H 1.08997 * 109.46935 * 150.00358 * 6 5 4 32 32 H 0.97001 * 120.00072 * 179.97438 * 10 9 7 33 33 H 0.96701 * 114.00096 * 300.00604 * 19 17 15 34 34 H 1.08004 * 120.42357 * 0.02562 * 21 20 17 35 35 H 1.07998 * 120.79041 * 179.72616 * 22 21 20 36 36 H 1.08006 * 120.41737 * 180.22055 * 23 22 21 37 37 H 1.08003 * 119.62180 * 179.76934 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 -0.0333 1.4422 5 7 4.5831 -0.0320 1.4421 6 6 5.3166 -1.2989 1.4959 7 6 5.5681 -1.6732 2.9339 8 1 5.2169 -1.0313 3.7283 9 6 6.2464 -2.8351 3.2354 10 7 6.6735 -3.6170 2.2681 11 14 6.5586 -3.2986 5.0178 12 1 5.4291 -4.1213 5.5204 13 1 7.8192 -4.0777 5.1132 14 1 6.6756 -2.0655 5.8368 15 6 5.2559 1.1347 1.3928 16 8 6.4640 1.1340 1.2851 17 6 4.5072 2.4403 1.4712 18 1 3.5769 2.3599 0.9090 19 8 5.3103 3.4840 0.9166 20 6 4.1979 2.7561 2.9119 21 6 4.6051 3.9627 3.4494 22 6 4.3207 4.2411 4.7774 23 6 3.6245 3.2957 5.5153 24 6 3.2489 2.1118 4.9097 25 7 3.5415 1.8785 3.6450 26 1 2.9710 0.9026 -0.4926 27 1 2.9718 -0.8769 -0.5347 28 1 2.7551 -0.9353 1.9347 29 1 2.7543 0.8442 1.9768 30 1 4.7282 -2.0801 1.0148 31 1 6.2689 -1.1897 0.9771 32 1 7.1510 -4.4342 2.4801 33 1 6.1556 3.6122 1.3684 34 1 5.1419 4.6779 2.8436 35 1 4.6304 5.1737 5.2254 36 1 3.3825 3.4807 6.5515 37 1 2.7097 1.3688 5.4786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791332004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:52 Heat of formation + Delta-G solvation = -13.981472 kcal Electronic energy + Delta-G solvation = -23056.048684 eV Core-core repulsion = 19606.057576 eV Total energy + Delta-G solvation = -3449.991108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67730 -39.08008 -36.96433 -36.36508 -35.14682 -32.96071 -32.55943 -31.48763 -30.79494 -28.33151 -26.44308 -23.93799 -23.60612 -23.11364 -21.98663 -19.07429 -17.86562 -17.52851 -17.02745 -16.56208 -16.36725 -15.96843 -15.67420 -14.79763 -14.65884 -14.42472 -14.22552 -14.02192 -13.50101 -13.43085 -13.19990 -13.05207 -12.50038 -12.37180 -12.27113 -12.03633 -11.70899 -11.48785 -11.26235 -11.06337 -10.94495 -10.81629 -10.59160 -10.19895 -9.91058 -9.67454 -9.44380 -9.26803 -8.71706 -8.45363 -7.78573 -6.06530 -4.10149 1.00946 1.24119 2.78395 2.87925 3.10401 3.28131 3.35100 3.38753 3.59810 3.80778 4.02241 4.24748 4.40790 4.46241 4.68938 4.80812 4.95105 5.04557 5.08029 5.19687 5.26399 5.28965 5.37477 5.43623 5.63093 5.67890 5.97096 6.02545 6.10248 6.31676 6.63267 6.94412 7.36475 7.42416 7.47092 7.64381 7.90460 7.94985 8.20998 8.26522 8.78720 8.98005 9.54599 11.01784 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.006873 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.483210 B = 4072.997748 C = 5139.481386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.220 3.780 3 C -0.056 4.056 4 C 0.110 3.890 5 N -0.576 5.576 6 C 0.243 3.757 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.496 3.504 16 O -0.533 6.533 17 C 0.136 3.864 18 H 0.133 0.867 19 O -0.535 6.535 20 C 0.100 3.900 21 C -0.160 4.160 22 C -0.074 4.074 23 C -0.175 4.175 24 C 0.109 3.891 25 N -0.459 5.459 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.386 0.614 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 14.081 2.128 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.098 4.098 3 C -0.098 4.098 4 C -0.016 4.016 5 N -0.307 5.307 6 C 0.125 3.875 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.280 3.720 16 O -0.410 6.410 17 C 0.072 3.928 18 H 0.151 0.849 19 O -0.340 6.340 20 C -0.039 4.039 21 C -0.180 4.180 22 C -0.100 4.100 23 C -0.195 4.195 24 C -0.048 4.048 25 N -0.169 5.169 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.928 13.159 1.236 15.412 hybrid contribution 1.329 0.262 1.928 2.356 sum -6.599 13.420 3.164 15.286 Atomic orbital electron populations 1.81193 1.13013 1.09398 1.08804 1.29060 0.95057 0.92756 0.92963 1.19996 0.81524 1.06162 1.02086 1.21551 0.81810 1.05968 0.92281 1.48005 1.05212 1.07714 1.69772 1.19389 0.92647 0.77846 0.97664 1.21433 1.36197 1.06328 0.92225 0.92158 1.24911 0.95472 0.96301 0.97371 1.69920 1.38467 1.13454 1.31534 0.86537 0.77673 0.78386 0.85048 1.20639 1.21171 1.20076 1.20628 0.88170 0.85470 0.77695 1.90691 1.13860 1.86751 1.49733 1.20662 0.95359 0.87145 0.89610 0.84944 1.86550 1.34548 1.53052 1.59843 1.21572 0.95256 0.90902 0.96122 1.21836 1.01703 0.98263 0.96174 1.21542 0.95577 0.99230 0.93688 1.22169 1.00329 0.95595 1.01377 1.22798 0.95968 0.95454 0.90616 1.67372 1.11608 1.30857 1.07074 0.87742 0.86563 0.88753 0.88530 0.94614 0.93558 0.92739 0.76370 0.84127 0.84803 0.84825 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.89 18.54 42.16 0.78 -6.11 16 2 C 0.22 2.86 15.43 -20.76 -0.32 2.54 16 3 C -0.06 -0.65 5.84 -29.52 -0.17 -0.82 16 4 C 0.11 1.63 4.66 -4.04 -0.02 1.61 16 5 N -0.58 -10.98 2.46 -175.06 -0.43 -11.41 16 6 C 0.24 5.88 5.19 -5.19 -0.03 5.85 16 7 C -0.52 -14.11 9.39 -34.44 -0.32 -14.43 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 11 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.50 9.46 6.70 -10.98 -0.07 9.39 16 16 O -0.53 -12.39 15.89 -13.38 -0.21 -12.61 16 17 C 0.14 1.97 3.10 -29.03 -0.09 1.88 16 18 H 0.13 1.63 5.92 -51.93 -0.31 1.32 16 19 O -0.53 -7.17 12.02 -54.17 -0.65 -7.82 16 20 C 0.10 1.42 6.08 -82.59 -0.50 0.91 16 21 C -0.16 -1.87 9.24 -39.44 -0.36 -2.23 16 22 C -0.07 -0.75 10.18 -39.28 -0.40 -1.15 16 23 C -0.17 -1.81 10.11 -39.44 -0.40 -2.21 16 24 C 0.11 1.38 11.18 -17.55 -0.20 1.18 16 25 N -0.46 -6.87 7.60 -9.48 -0.07 -6.94 16 26 H 0.10 1.01 7.24 -51.93 -0.38 0.63 16 27 H 0.12 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.09 1.48 8.04 -51.93 -0.42 1.07 16 29 H 0.10 1.35 4.45 -51.93 -0.23 1.12 16 30 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.05 1.28 7.35 -51.93 -0.38 0.89 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.39 4.60 7.88 45.56 0.36 4.96 16 34 H 0.14 1.35 6.72 -52.48 -0.35 0.99 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -34.19 327.32 -6.28 -40.47 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.36 Total: 4.00 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.98 Total: 4.10 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 1.02 Total: -49.48 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.86 Total: -20.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.19 -6.28 -40.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791332004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.491 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds