Wall clock time and date at job start Tue Mar 31 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46904 * 271.35678 * 3 2 1 5 5 N 1.46502 * 109.46703 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99949 * 266.20335 * 5 4 3 7 7 C 1.50703 * 109.47274 * 270.00580 * 6 5 4 8 8 H 1.08000 * 119.99706 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99822 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00108 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99784 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46663 * 90.00260 * 11 9 7 13 13 H 1.48494 * 109.47182 * 210.00024 * 11 9 7 14 14 H 1.48498 * 109.47317 * 330.00716 * 11 9 7 15 15 C 1.34776 * 119.99995 * 86.21261 * 5 4 3 16 16 O 1.21285 * 119.99938 * 185.88129 * 15 5 4 17 17 C 1.50703 * 119.99988 * 5.87264 * 15 5 4 18 18 H 1.08997 * 109.47185 * 321.35435 * 17 15 5 19 19 O 1.42899 * 109.47200 * 201.35603 * 17 15 5 20 20 C 1.50699 * 109.46946 * 81.35792 * 17 15 5 21 21 C 1.38222 * 119.61727 * 124.59054 * 20 17 15 22 22 C 1.38638 * 119.16259 * 180.27821 * 21 20 17 23 23 C 1.38664 * 118.41521 * 359.47997 * 22 21 20 24 24 C 1.38183 * 119.16612 * 0.48123 * 23 22 21 25 25 N 1.31851 * 119.61962 * 304.57407 * 20 17 15 26 26 H 1.08995 * 109.47416 * 151.35266 * 3 2 1 27 27 H 1.09007 * 109.47166 * 31.35061 * 3 2 1 28 28 H 1.08995 * 109.46996 * 59.99917 * 4 3 2 29 29 H 1.08998 * 109.46457 * 299.99661 * 4 3 2 30 30 H 1.08998 * 109.46830 * 30.00399 * 6 5 4 31 31 H 1.08997 * 109.46935 * 150.00358 * 6 5 4 32 32 H 0.97001 * 120.00072 * 179.97438 * 10 9 7 33 33 H 0.96701 * 114.00096 * 300.00604 * 19 17 15 34 34 H 1.08004 * 120.42357 * 0.02562 * 21 20 17 35 35 H 1.07998 * 120.79041 * 179.72616 * 22 21 20 36 36 H 1.08006 * 120.41737 * 180.22055 * 23 22 21 37 37 H 1.08003 * 119.62180 * 179.76934 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 -0.0333 1.4422 5 7 4.5831 -0.0320 1.4421 6 6 5.3166 -1.2989 1.4959 7 6 5.5681 -1.6732 2.9339 8 1 5.2169 -1.0313 3.7283 9 6 6.2464 -2.8351 3.2354 10 7 6.6735 -3.6170 2.2681 11 14 6.5586 -3.2986 5.0178 12 1 5.4291 -4.1213 5.5204 13 1 7.8192 -4.0777 5.1132 14 1 6.6756 -2.0655 5.8368 15 6 5.2559 1.1347 1.3928 16 8 6.4640 1.1340 1.2851 17 6 4.5072 2.4403 1.4712 18 1 3.5769 2.3599 0.9090 19 8 5.3103 3.4840 0.9166 20 6 4.1979 2.7561 2.9119 21 6 4.6051 3.9627 3.4494 22 6 4.3207 4.2411 4.7774 23 6 3.6245 3.2957 5.5153 24 6 3.2489 2.1118 4.9097 25 7 3.5415 1.8785 3.6450 26 1 2.9710 0.9026 -0.4926 27 1 2.9718 -0.8769 -0.5347 28 1 2.7551 -0.9353 1.9347 29 1 2.7543 0.8442 1.9768 30 1 4.7282 -2.0801 1.0148 31 1 6.2689 -1.1897 0.9771 32 1 7.1510 -4.4342 2.4801 33 1 6.1556 3.6122 1.3684 34 1 5.1419 4.6779 2.8436 35 1 4.6304 5.1737 5.2254 36 1 3.3825 3.4807 6.5515 37 1 2.7097 1.3688 5.4786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791332004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:52 Heat of formation + Delta-G solvation = -37.270256 kcal Electronic energy + Delta-G solvation = -23057.058561 eV Core-core repulsion = 19606.057576 eV Total energy + Delta-G solvation = -3451.000985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77809 -40.35296 -38.15929 -37.55445 -36.62212 -34.88189 -33.53550 -32.43502 -32.19849 -29.84066 -27.97229 -25.30853 -24.86606 -24.34262 -23.17327 -20.47451 -18.96858 -18.71826 -18.39662 -18.31283 -17.66249 -17.07964 -16.67018 -16.45140 -15.76886 -15.64850 -15.57888 -15.31997 -14.80267 -14.49458 -14.47388 -14.22768 -13.94067 -13.71108 -13.53037 -13.25199 -13.15702 -12.94462 -12.76474 -12.55735 -12.52673 -12.19260 -12.14218 -11.89912 -11.66852 -10.82746 -10.66278 -10.58582 -10.26893 -9.85955 -9.44732 -8.17481 -6.29001 0.10293 0.39083 1.37636 1.39358 1.48700 1.58426 1.76154 1.81409 2.24796 2.42640 2.83727 2.99911 3.10434 3.14765 3.38047 3.65096 3.87044 4.03644 4.11766 4.13440 4.15964 4.27076 4.40835 4.53858 4.68897 4.81656 4.85166 5.07613 5.15384 5.20679 5.28292 5.33438 5.61900 5.78897 5.87149 6.14101 6.38149 6.57551 6.70612 6.81283 7.01390 7.27964 7.44166 8.89502 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.006873 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.483210 B = 4072.997748 C = 5139.481386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.246 3.754 3 C -0.044 4.044 4 C 0.111 3.889 5 N -0.576 5.576 6 C 0.258 3.742 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.276 1.276 15 C 0.489 3.511 16 O -0.585 6.585 17 C 0.153 3.847 18 H 0.155 0.845 19 O -0.531 6.531 20 C 0.070 3.930 21 C -0.161 4.161 22 C -0.073 4.073 23 C -0.165 4.165 24 C 0.084 3.916 25 N -0.491 5.491 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.392 0.608 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 15.864 3.499 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.071 4.071 3 C -0.085 4.085 4 C -0.013 4.013 5 N -0.306 5.306 6 C 0.137 3.863 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.201 1.201 15 C 0.277 3.723 16 O -0.466 6.466 17 C 0.089 3.911 18 H 0.172 0.828 19 O -0.337 6.337 20 C -0.067 4.067 21 C -0.181 4.181 22 C -0.099 4.099 23 C -0.185 4.185 24 C -0.073 4.073 25 N -0.202 5.202 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.183 0.817 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.771 14.962 2.605 17.538 hybrid contribution 1.594 -0.243 1.552 2.238 sum -7.178 14.720 4.157 16.896 Atomic orbital electron populations 1.81227 1.14162 1.10904 1.09963 1.29058 0.94872 0.91442 0.91778 1.19921 0.80496 1.08042 1.00072 1.21646 0.79134 1.06028 0.94541 1.47865 1.06756 1.06312 1.69632 1.18860 0.91459 0.80149 0.95805 1.21681 1.35966 1.06193 0.93253 0.92990 1.25715 0.95326 0.96395 1.01392 1.70027 1.39235 1.13909 1.33476 0.85564 0.77886 0.78043 0.80199 1.19210 1.20904 1.20070 1.21544 0.87853 0.86883 0.76059 1.90654 1.16269 1.87710 1.51918 1.20521 0.95237 0.84299 0.91036 0.82774 1.86540 1.34937 1.52185 1.60039 1.21555 0.97110 0.92254 0.95819 1.22113 1.01081 0.97642 0.97233 1.22006 0.94525 1.00408 0.92974 1.22538 0.98776 0.94407 1.02758 1.23154 0.96857 0.97019 0.90296 1.67253 1.12682 1.31857 1.08369 0.84966 0.85704 0.89992 0.87254 0.94818 0.97648 0.92595 0.75657 0.82291 0.81263 0.81671 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.46 18.54 20.01 0.37 -14.09 16 2 C 0.25 6.04 15.43 89.44 1.38 7.42 16 3 C -0.04 -0.95 5.84 28.79 0.17 -0.79 16 4 C 0.11 3.23 4.66 86.38 0.40 3.64 16 5 N -0.58 -22.26 2.46 -826.14 -2.03 -24.29 16 6 C 0.26 12.93 5.19 85.63 0.44 13.38 16 7 C -0.53 -29.37 9.39 25.60 0.24 -29.13 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.59 5.46 84.65 0.46 1.06 16 10 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 11 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 C 0.49 18.85 6.70 87.66 0.59 19.44 16 16 O -0.58 -28.05 15.89 15.06 0.24 -27.81 16 17 C 0.15 4.24 3.10 29.10 0.09 4.33 16 18 H 0.16 3.46 5.92 -2.39 -0.01 3.45 16 19 O -0.53 -13.48 12.02 -130.87 -1.57 -15.05 16 20 C 0.07 1.90 6.08 42.55 0.26 2.16 16 21 C -0.16 -3.37 9.24 22.36 0.21 -3.16 16 22 C -0.07 -1.23 10.18 22.47 0.23 -1.00 16 23 C -0.17 -2.93 10.11 22.36 0.23 -2.70 16 24 C 0.08 1.99 11.18 84.67 0.95 2.94 16 25 N -0.49 -14.23 7.60 -183.89 -1.40 -15.63 16 26 H 0.13 2.21 7.24 -2.39 -0.02 2.19 16 27 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 29 H 0.11 2.97 4.45 -2.39 -0.01 2.96 16 30 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 31 H 0.01 0.31 7.35 -2.39 -0.02 0.30 16 32 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.39 8.97 7.88 -74.06 -0.58 8.38 16 34 H 0.16 2.60 6.72 -2.91 -0.02 2.58 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -76.15 327.32 4.10 -72.05 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.54 Total: 15.14 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 5.64 Total: 17.57 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -2.77 Total: -108.11 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.33 Total: -42.86 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.15 4.10 -72.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791332004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.778 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds