Wall clock time and date at job start Tue Mar 31 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47391 * 46.67090 * 3 2 1 5 5 N 1.46495 * 109.47484 * 176.60879 * 4 3 2 6 6 C 1.46497 * 120.00186 * 267.08646 * 5 4 3 7 7 C 1.50697 * 109.47365 * 270.00183 * 6 5 4 8 8 H 1.08002 * 119.99742 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00193 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00013 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47106 * 90.00111 * 11 9 7 13 13 H 1.48503 * 109.46966 * 209.99686 * 11 9 7 14 14 H 1.48499 * 109.47279 * 329.99899 * 11 9 7 15 15 C 1.34781 * 119.99984 * 87.08369 * 5 4 3 16 16 O 1.21277 * 119.99697 * 4.98583 * 15 5 4 17 17 C 1.50696 * 119.99781 * 184.98293 * 15 5 4 18 18 H 1.08998 * 109.47073 * 45.51204 * 17 15 5 19 19 O 1.42903 * 109.46892 * 165.50554 * 17 15 5 20 20 C 1.50698 * 109.47532 * 285.50763 * 17 15 5 21 21 C 1.38220 * 119.62254 * 125.02509 * 20 17 15 22 22 C 1.38623 * 119.16491 * 179.70874 * 21 20 17 23 23 C 1.38674 * 118.42123 * 0.50647 * 22 21 20 24 24 C 1.38185 * 119.15973 * 359.51140 * 23 22 21 25 25 N 1.31854 * 119.61509 * 305.00288 * 20 17 15 26 26 H 1.09005 * 109.47537 * 286.66450 * 3 2 1 27 27 H 1.09003 * 109.47012 * 166.66885 * 3 2 1 28 28 H 1.09001 * 109.47023 * 56.60437 * 4 3 2 29 29 H 1.09003 * 109.46777 * 296.61295 * 4 3 2 30 30 H 1.09006 * 109.46971 * 29.99891 * 6 5 4 31 31 H 1.08999 * 109.47360 * 149.99676 * 6 5 4 32 32 H 0.97007 * 120.00315 * 180.02562 * 10 9 7 33 33 H 0.96704 * 114.00024 * 60.00066 * 19 17 15 34 34 H 1.08003 * 120.41884 * 359.97438 * 21 20 17 35 35 H 1.08007 * 120.79340 * 180.27577 * 22 21 20 36 36 H 1.07999 * 120.42372 * 179.78634 * 23 22 21 37 37 H 1.08005 * 119.61889 * 180.24892 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9889 -1.0493 5 7 4.5811 -0.9294 -1.1060 6 6 5.2415 -0.0419 -2.0664 7 6 5.4731 -0.7829 -3.3580 8 1 5.1602 -1.8121 -3.4538 9 6 6.0856 -0.1472 -4.4172 10 7 6.4671 1.1059 -4.3004 11 14 6.3734 -1.0659 -6.0180 12 1 5.2001 -0.8853 -6.9102 13 1 7.5884 -0.5315 -6.6838 14 1 6.5604 -2.5112 -5.7326 15 6 5.3193 -1.6911 -0.2744 16 8 4.7763 -2.4915 0.4573 17 6 6.8193 -1.5483 -0.2540 18 1 7.0834 -0.4910 -0.2363 19 8 7.3430 -2.1895 0.9108 20 6 7.4021 -2.1911 -1.4862 21 6 8.2252 -1.4543 -2.3168 22 6 8.7610 -2.0568 -3.4445 23 6 8.4388 -3.3809 -3.7014 24 6 7.6085 -4.0540 -2.8255 25 7 7.1211 -3.4501 -1.7591 26 1 2.9715 -0.2939 0.9845 27 1 2.9708 1.0008 -0.2370 28 1 2.7062 -0.7294 -2.0244 29 1 2.8060 -1.9978 -0.7796 30 1 4.6089 0.8258 -2.2537 31 1 6.1978 0.2867 -1.6595 32 1 6.8977 1.5533 -5.0457 33 1 7.1457 -3.1349 0.9617 34 1 8.4516 -0.4234 -2.0879 35 1 9.4108 -1.5070 -4.1092 36 1 8.8353 -3.8811 -4.5726 37 1 7.3560 -5.0867 -3.0163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791332009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:55 Heat of formation + Delta-G solvation = -18.646841 kcal Electronic energy + Delta-G solvation = -23570.767578 eV Core-core repulsion = 20120.574165 eV Total energy + Delta-G solvation = -3450.193413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.25560 -38.90709 -36.84353 -36.02092 -35.13633 -32.99683 -31.98868 -31.65147 -30.75174 -27.40345 -26.97261 -23.84545 -23.24626 -22.92032 -21.77342 -18.96717 -17.52379 -17.30506 -16.88533 -16.64877 -16.12363 -15.48503 -15.41138 -14.76417 -14.67209 -14.26120 -14.02367 -13.94264 -13.34211 -13.16238 -12.74536 -12.60927 -12.52261 -12.33088 -12.18021 -11.90644 -11.69640 -11.60708 -11.31768 -11.11066 -10.93354 -10.67275 -10.53124 -10.24675 -9.90622 -9.34704 -9.19666 -8.85283 -8.64557 -8.34561 -7.96272 -6.30542 -4.34260 1.61478 1.87937 2.82659 2.93803 3.11104 3.15330 3.20293 3.26509 3.59640 4.22650 4.27183 4.32540 4.63519 4.86279 5.05448 5.07664 5.20802 5.30458 5.31706 5.39890 5.56285 5.64886 5.65983 5.84551 6.01615 6.04389 6.23925 6.24919 6.52421 6.62295 6.73437 6.94727 7.20254 7.31307 7.65020 7.69646 7.79828 7.91379 8.09951 8.46642 8.64888 8.80454 9.32476 10.76059 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.007406 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.322847 B = 3779.966463 C = 5046.322612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.127 3.873 5 N -0.592 5.592 6 C 0.233 3.767 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.078 3.922 10 N -0.887 5.887 11 Si 0.874 3.126 12 H -0.282 1.282 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.505 3.495 16 O -0.553 6.553 17 C 0.153 3.847 18 H 0.133 0.867 19 O -0.540 6.540 20 C 0.116 3.884 21 C -0.093 4.093 22 C -0.076 4.076 23 C -0.167 4.167 24 C 0.090 3.910 25 N -0.470 5.470 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 -2.784 2.895 6.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.324 5.324 6 C 0.114 3.886 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.125 4.125 10 N -0.526 5.526 11 Si 0.701 3.299 12 H -0.209 1.209 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.292 3.708 16 O -0.432 6.432 17 C 0.089 3.911 18 H 0.151 0.849 19 O -0.345 6.345 20 C -0.023 4.023 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.187 4.187 24 C -0.067 4.067 25 N -0.181 5.181 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.973 -2.906 3.873 5.682 hybrid contribution 0.893 -0.321 -2.223 2.417 sum 3.866 -3.227 1.650 5.299 Atomic orbital electron populations 1.81175 1.13078 1.09278 1.09209 1.29096 0.95116 0.92711 0.92745 1.19788 0.81368 1.03924 1.03631 1.21094 0.81626 0.98893 0.98261 1.48180 1.05001 1.42943 1.36285 1.19581 0.93282 0.89107 0.86660 1.21344 1.39463 0.98787 0.96989 0.92280 1.24731 0.95134 0.94598 0.98062 1.69891 1.40259 1.10289 1.32135 0.86858 0.77960 0.80997 0.84054 1.20874 1.20981 1.18944 1.20973 0.89854 0.80248 0.79762 1.90616 1.73172 1.36435 1.42994 1.20598 0.89880 0.97881 0.82696 0.84926 1.86511 1.77857 1.28392 1.41701 1.20986 0.94768 0.90668 0.95880 1.21628 0.95454 1.00081 0.94115 1.21330 0.98303 0.94385 0.96200 1.21963 1.00390 0.95904 1.00435 1.22373 0.94330 0.99503 0.90520 1.67253 1.20876 1.10553 1.19388 0.87301 0.86983 0.89316 0.90068 0.94141 0.94391 0.92558 0.76467 0.84938 0.85715 0.85950 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.51 18.54 42.15 0.78 -6.73 16 2 C 0.22 3.17 15.43 -20.76 -0.32 2.85 16 3 C -0.05 -0.58 6.01 -29.52 -0.18 -0.76 16 4 C 0.13 2.00 5.37 -4.04 -0.02 1.98 16 5 N -0.59 -10.69 2.46 -175.06 -0.43 -11.12 16 6 C 0.23 4.65 4.69 -5.20 -0.02 4.63 16 7 C -0.53 -11.90 6.67 -34.44 -0.23 -12.13 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.08 1.81 5.07 -17.82 -0.09 1.72 16 10 N -0.89 -21.35 13.29 55.43 0.74 -20.61 16 11 Si 0.87 18.92 28.64 -169.99 -4.87 14.05 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.27 -5.67 7.10 56.52 0.40 -5.27 16 15 C 0.50 9.48 6.76 -10.99 -0.07 9.40 16 16 O -0.55 -11.42 15.90 -13.92 -0.22 -11.64 16 17 C 0.15 2.64 2.91 -29.04 -0.08 2.56 16 18 H 0.13 2.12 6.51 -51.93 -0.34 1.79 16 19 O -0.54 -9.07 13.06 -54.71 -0.71 -9.78 16 20 C 0.12 2.08 4.07 -82.59 -0.34 1.74 16 21 C -0.09 -1.61 7.24 -39.45 -0.29 -1.90 16 22 C -0.08 -1.25 9.27 -39.28 -0.36 -1.61 16 23 C -0.17 -2.61 10.11 -39.44 -0.40 -3.01 16 24 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 25 N -0.47 -8.64 9.99 -9.47 -0.09 -8.74 16 26 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 29 H 0.08 1.35 7.45 -51.93 -0.39 0.97 16 30 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 0.76 5.50 -51.93 -0.29 0.48 16 32 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 33 H 0.39 6.10 8.67 45.56 0.39 6.50 16 34 H 0.13 2.21 7.95 -52.48 -0.42 1.79 16 35 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -28.01 326.80 -6.02 -34.03 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.53 Total: 8.84 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -2.60 Total: 6.76 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.99 Total: -47.20 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.94 Total: -21.42 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.87 Total: 14.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.01 -6.02 -34.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791332009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.387 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds