Wall clock time and date at job start Tue Mar 31 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47391 * 46.67090 * 3 2 1 5 5 N 1.46495 * 109.47484 * 176.60879 * 4 3 2 6 6 C 1.46497 * 120.00186 * 267.08646 * 5 4 3 7 7 C 1.50697 * 109.47365 * 270.00183 * 6 5 4 8 8 H 1.08002 * 119.99742 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00193 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00013 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47106 * 90.00111 * 11 9 7 13 13 H 1.48503 * 109.46966 * 209.99686 * 11 9 7 14 14 H 1.48499 * 109.47279 * 329.99899 * 11 9 7 15 15 C 1.34781 * 119.99984 * 87.08369 * 5 4 3 16 16 O 1.21277 * 119.99697 * 4.98583 * 15 5 4 17 17 C 1.50696 * 119.99781 * 184.98293 * 15 5 4 18 18 H 1.08998 * 109.47073 * 45.51204 * 17 15 5 19 19 O 1.42903 * 109.46892 * 165.50554 * 17 15 5 20 20 C 1.50698 * 109.47532 * 285.50763 * 17 15 5 21 21 C 1.38220 * 119.62254 * 125.02509 * 20 17 15 22 22 C 1.38623 * 119.16491 * 179.70874 * 21 20 17 23 23 C 1.38674 * 118.42123 * 0.50647 * 22 21 20 24 24 C 1.38185 * 119.15973 * 359.51140 * 23 22 21 25 25 N 1.31854 * 119.61509 * 305.00288 * 20 17 15 26 26 H 1.09005 * 109.47537 * 286.66450 * 3 2 1 27 27 H 1.09003 * 109.47012 * 166.66885 * 3 2 1 28 28 H 1.09001 * 109.47023 * 56.60437 * 4 3 2 29 29 H 1.09003 * 109.46777 * 296.61295 * 4 3 2 30 30 H 1.09006 * 109.46971 * 29.99891 * 6 5 4 31 31 H 1.08999 * 109.47360 * 149.99676 * 6 5 4 32 32 H 0.97007 * 120.00315 * 180.02562 * 10 9 7 33 33 H 0.96704 * 114.00024 * 60.00066 * 19 17 15 34 34 H 1.08003 * 120.41884 * 359.97438 * 21 20 17 35 35 H 1.08007 * 120.79340 * 180.27577 * 22 21 20 36 36 H 1.07999 * 120.42372 * 179.78634 * 23 22 21 37 37 H 1.08005 * 119.61889 * 180.24892 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9889 -1.0493 5 7 4.5811 -0.9294 -1.1060 6 6 5.2415 -0.0419 -2.0664 7 6 5.4731 -0.7829 -3.3580 8 1 5.1602 -1.8121 -3.4538 9 6 6.0856 -0.1472 -4.4172 10 7 6.4671 1.1059 -4.3004 11 14 6.3734 -1.0659 -6.0180 12 1 5.2001 -0.8853 -6.9102 13 1 7.5884 -0.5315 -6.6838 14 1 6.5604 -2.5112 -5.7326 15 6 5.3193 -1.6911 -0.2744 16 8 4.7763 -2.4915 0.4573 17 6 6.8193 -1.5483 -0.2540 18 1 7.0834 -0.4910 -0.2363 19 8 7.3430 -2.1895 0.9108 20 6 7.4021 -2.1911 -1.4862 21 6 8.2252 -1.4543 -2.3168 22 6 8.7610 -2.0568 -3.4445 23 6 8.4388 -3.3809 -3.7014 24 6 7.6085 -4.0540 -2.8255 25 7 7.1211 -3.4501 -1.7591 26 1 2.9715 -0.2939 0.9845 27 1 2.9708 1.0008 -0.2370 28 1 2.7062 -0.7294 -2.0244 29 1 2.8060 -1.9978 -0.7796 30 1 4.6089 0.8258 -2.2537 31 1 6.1978 0.2867 -1.6595 32 1 6.8977 1.5533 -5.0457 33 1 7.1457 -3.1349 0.9617 34 1 8.4516 -0.4234 -2.0879 35 1 9.4108 -1.5070 -4.1092 36 1 8.8353 -3.8811 -4.5726 37 1 7.3560 -5.0867 -3.0163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791332009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:54 Heat of formation + Delta-G solvation = -36.008415 kcal Electronic energy + Delta-G solvation = -23571.520432 eV Core-core repulsion = 20120.574165 eV Total energy + Delta-G solvation = -3450.946268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62780 -40.28036 -38.11978 -37.34429 -36.64229 -34.65377 -33.28096 -33.01323 -32.04685 -29.04244 -28.31757 -25.19923 -24.82575 -24.25505 -23.08724 -20.39584 -18.81553 -18.67777 -18.29349 -18.22600 -17.54377 -16.85386 -16.72303 -16.33109 -15.94373 -15.69471 -15.35079 -15.25601 -14.65806 -14.53398 -14.26854 -14.00575 -13.82678 -13.67307 -13.58660 -13.25755 -13.23889 -12.91830 -12.74733 -12.72698 -12.53919 -12.07030 -11.88882 -11.78642 -11.62993 -10.77650 -10.56933 -10.40468 -10.14352 -9.67907 -9.48378 -8.09654 -6.15389 0.33185 0.58946 1.38215 1.46747 1.51727 1.57976 1.74552 1.77667 2.22677 2.48414 2.97088 3.13440 3.24469 3.35831 3.55076 3.69912 3.93687 4.12282 4.13417 4.16923 4.34130 4.41115 4.54067 4.56605 4.76752 4.84484 4.96943 4.99763 5.03697 5.31337 5.35486 5.46978 5.72927 5.88238 5.95125 6.17923 6.46318 6.54153 6.59504 6.89987 7.17418 7.28175 7.53160 8.95679 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.007406 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.322847 B = 3779.966463 C = 5046.322612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.030 4.030 4 C 0.124 3.876 5 N -0.590 5.590 6 C 0.244 3.756 7 C -0.519 4.519 8 H 0.037 0.963 9 C 0.057 3.943 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.297 1.297 13 H -0.278 1.278 14 H -0.261 1.261 15 C 0.504 3.496 16 O -0.574 6.574 17 C 0.154 3.846 18 H 0.145 0.855 19 O -0.540 6.540 20 C 0.104 3.896 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.167 4.167 24 C 0.078 3.922 25 N -0.494 5.494 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.389 0.611 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.151 0.849 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -2.807 2.608 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.071 4.071 4 C -0.001 4.001 5 N -0.321 5.321 6 C 0.124 3.876 7 C -0.557 4.557 8 H 0.055 0.945 9 C -0.145 4.145 10 N -0.544 5.544 11 Si 0.731 3.269 12 H -0.224 1.224 13 H -0.203 1.203 14 H -0.185 1.185 15 C 0.291 3.709 16 O -0.455 6.455 17 C 0.091 3.909 18 H 0.162 0.838 19 O -0.345 6.345 20 C -0.035 4.035 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.186 4.186 24 C -0.078 4.078 25 N -0.204 5.204 26 H 0.139 0.861 27 H 0.153 0.847 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.713 -2.932 3.590 5.939 hybrid contribution 0.677 -0.379 -2.165 2.300 sum 4.390 -3.311 1.424 5.680 Atomic orbital electron populations 1.81203 1.14329 1.10699 1.10569 1.29233 0.95117 0.91415 0.91474 1.19713 0.80070 1.04178 1.03133 1.21148 0.80491 0.99290 0.99188 1.48118 1.05818 1.42481 1.35707 1.19352 0.93464 0.88757 0.86018 1.21290 1.38752 0.97676 0.98026 0.94517 1.24997 0.95278 0.94894 0.99322 1.69923 1.41073 1.10852 1.32521 0.86401 0.77443 0.80781 0.82258 1.22421 1.20311 1.18458 1.21233 0.90490 0.79778 0.79365 1.90601 1.73748 1.37251 1.43918 1.20642 0.88873 0.98550 0.82849 0.83785 1.86495 1.77752 1.28706 1.41581 1.21037 0.95349 0.90851 0.96221 1.21726 0.95818 1.00261 0.94600 1.21619 0.98347 0.94983 0.96115 1.22303 0.99647 0.95679 1.01015 1.22869 0.94178 1.00670 0.90131 1.67258 1.21739 1.10933 1.20486 0.86108 0.84743 0.89589 0.91121 0.94508 0.94040 0.92628 0.76108 0.84789 0.84219 0.83131 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.96 18.54 20.01 0.37 -15.59 16 2 C 0.24 6.68 15.43 89.44 1.38 8.06 16 3 C -0.03 -0.70 6.01 28.79 0.17 -0.53 16 4 C 0.12 3.77 5.37 86.38 0.46 4.23 16 5 N -0.59 -20.62 2.46 -826.17 -2.03 -22.66 16 6 C 0.24 9.44 4.69 85.63 0.40 9.84 16 7 C -0.52 -22.86 6.67 25.60 0.17 -22.69 16 8 H 0.04 1.79 7.81 -2.91 -0.02 1.76 16 9 C 0.06 2.56 5.07 84.66 0.43 2.99 16 10 N -0.90 -42.30 13.29 21.45 0.28 -42.02 16 11 Si 0.90 37.41 28.64 68.60 1.96 39.38 16 12 H -0.30 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.26 -10.50 7.10 99.48 0.71 -9.79 16 15 C 0.50 18.43 6.76 87.66 0.59 19.02 16 16 O -0.57 -23.29 15.90 15.61 0.25 -23.04 16 17 C 0.15 5.18 2.91 29.10 0.08 5.27 16 18 H 0.14 4.44 6.51 -2.39 -0.02 4.42 16 19 O -0.54 -17.67 13.06 -130.35 -1.70 -19.37 16 20 C 0.10 3.62 4.07 42.55 0.17 3.79 16 21 C -0.10 -3.48 7.24 22.36 0.16 -3.32 16 22 C -0.08 -2.61 9.27 22.47 0.21 -2.41 16 23 C -0.17 -4.83 10.11 22.36 0.23 -4.60 16 24 C 0.08 2.44 11.18 84.67 0.95 3.39 16 25 N -0.49 -17.62 9.99 -183.88 -1.84 -19.46 16 26 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.09 2.66 8.05 -2.39 -0.02 2.64 16 29 H 0.07 2.32 7.45 -2.39 -0.02 2.30 16 30 H 0.04 1.47 8.07 -2.38 -0.02 1.45 16 31 H 0.04 1.60 5.50 -2.39 -0.01 1.59 16 32 H 0.26 12.10 8.31 -92.70 -0.77 11.33 16 33 H 0.39 12.10 8.67 -74.05 -0.64 11.46 16 34 H 0.13 4.33 7.95 -2.91 -0.02 4.31 16 35 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -57.51 326.80 3.18 -54.33 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.47 Total: 25.38 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 5.41 Total: 23.04 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -3.21 Total: -99.71 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.45 Total: -42.41 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.96 Total: 39.38 kcal Total: -57.51 3.18 -54.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791332009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.321 kcal (2) G-P(sol) polarization free energy of solvation -57.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds