Wall clock time and date at job start Tue Mar 31 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.37733 * 125.90350 * 317.28877 * 3 2 1 5 5 C 1.39941 * 106.80439 * 180.02562 * 4 3 2 6 6 C 1.36635 * 107.00493 * 0.02562 * 5 4 3 7 7 C 1.47023 * 125.70643 * 179.97438 * 6 5 4 8 8 O 1.21648 * 120.00352 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99922 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99987 * 180.02562 * 9 7 6 11 11 C 1.53071 * 109.45178 * 84.78906 * 10 9 7 12 12 C 1.53201 * 109.29371 * 181.24494 * 11 10 9 13 13 N 1.46928 * 108.89275 * 305.57634 * 12 11 10 14 14 C 1.36934 * 120.63265 * 233.51651 * 13 12 11 15 15 H 1.07997 * 119.99862 * 151.82898 * 14 13 12 16 16 C 1.38806 * 120.00015 * 331.83027 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08772 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.08448 * 16 14 13 19 19 H 1.48503 * 109.47142 * 60.00161 * 18 16 14 20 20 H 1.48498 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47267 * 300.00095 * 18 16 14 22 22 C 1.46932 * 118.73342 * 53.53882 * 13 12 11 23 23 C 1.53045 * 109.45960 * 205.00187 * 10 9 7 24 24 O 1.34559 * 125.89772 * 137.61095 * 3 2 1 25 25 H 1.08007 * 126.59549 * 359.97438 * 4 3 2 26 26 H 1.07994 * 126.49662 * 180.02562 * 5 4 3 27 27 H 0.96995 * 120.00081 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.45637 * 324.97326 * 10 9 7 29 29 H 1.09002 * 109.39343 * 61.36736 * 11 10 9 30 30 H 1.09003 * 109.62467 * 301.25963 * 11 10 9 31 31 H 1.09000 * 109.58250 * 185.72113 * 12 11 10 32 32 H 1.08995 * 109.58477 * 65.43833 * 12 11 10 33 33 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.59017 * 66.18099 * 22 13 12 35 35 H 1.09009 * 109.58200 * 186.46074 * 22 13 12 36 36 H 1.09002 * 109.49555 * 58.66185 * 23 10 9 37 37 H 1.08999 * 109.49562 * 298.56688 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3760 -0.8188 0.7567 5 6 4.6983 -0.4813 0.4466 6 6 4.6479 0.5226 -0.4789 7 6 5.8093 1.1862 -1.0891 8 8 6.9358 0.8490 -0.7774 9 7 5.6259 2.1675 -1.9947 10 6 6.7832 2.8284 -2.6031 11 6 7.2674 2.0076 -3.8010 12 6 8.4963 2.6853 -4.4155 13 7 8.1616 4.0805 -4.7322 14 6 8.3654 4.5783 -5.9914 15 1 7.7469 5.3830 -6.3605 16 6 9.3668 4.0486 -6.7935 17 7 10.3233 3.3205 -6.2574 18 14 9.3570 4.3690 -8.6338 19 1 9.4343 5.8311 -8.8821 20 1 10.5246 3.6978 -9.2593 21 1 8.1040 3.8324 -9.2231 22 6 7.6046 4.9314 -3.6718 23 6 6.3835 4.2308 -3.0676 24 8 3.3566 0.8061 -0.7348 25 1 3.0516 -1.5755 1.4557 26 1 5.5895 -0.9294 0.8603 27 1 4.7277 2.4361 -2.2435 28 1 7.5856 2.9038 -1.8692 29 1 6.4731 1.9504 -4.5454 30 1 7.5322 1.0024 -3.4730 31 1 8.7840 2.1625 -5.3276 32 1 9.3215 2.6599 -3.7040 33 1 11.0233 2.9506 -6.8178 34 1 8.3555 5.0893 -2.8977 35 1 7.3063 5.8917 -4.0928 36 1 6.0183 4.8056 -2.2165 37 1 5.5983 4.1549 -3.8198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794312282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:27 Heat of formation + Delta-G solvation = 36.178379 kcal Electronic energy + Delta-G solvation = -22004.700621 eV Core-core repulsion = 18556.884608 eV Total energy + Delta-G solvation = -3447.816013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.23237 -39.75390 -37.44752 -37.12877 -34.69682 -33.66697 -32.31571 -30.97786 -30.05892 -29.43698 -25.70086 -24.39341 -22.68747 -22.32455 -21.81034 -20.61587 -19.94938 -19.48741 -18.03523 -17.04049 -16.79620 -16.03346 -15.01351 -14.82363 -14.76167 -14.46602 -13.91327 -13.86253 -13.77592 -13.62295 -13.57155 -13.55299 -13.04557 -12.88614 -12.68563 -12.45182 -11.56360 -11.21473 -11.01769 -10.74345 -10.60891 -10.53687 -10.33846 -10.30506 -10.12734 -9.82107 -9.63642 -9.23032 -8.85805 -8.46856 -6.72331 -5.81563 -3.24955 0.15717 1.38339 1.50278 2.37712 2.75910 2.93798 2.98025 3.37092 3.43316 3.44017 3.60447 4.24959 4.47133 4.49033 4.96842 5.06309 5.20329 5.30489 5.35982 5.39197 5.54059 5.72655 5.74116 5.99124 6.10872 6.17773 6.19503 6.34684 6.50907 6.59687 6.70229 6.75228 6.76282 6.87631 7.31086 7.42431 7.63966 7.76796 7.98871 8.42094 9.17880 9.80854 10.37178 11.27103 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.003105 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.187480 B = 9016.120507 C = 9319.222240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C 0.290 3.710 3 C 0.057 3.943 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.020 4.020 7 C 0.594 3.406 8 O -0.507 6.507 9 N -0.707 5.707 10 C 0.148 3.852 11 C -0.148 4.148 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.257 4.257 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.149 3.851 23 C -0.140 4.140 24 O -0.143 6.143 25 H 0.172 0.828 26 H 0.175 0.825 27 H 0.401 0.599 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.022 0.978 33 H 0.255 0.745 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -6.545 13.416 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.049 5.049 2 C -0.026 4.026 3 C 0.002 3.998 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.075 4.075 7 C 0.377 3.623 8 O -0.384 6.384 9 N -0.356 5.356 10 C 0.046 3.954 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.021 3.979 23 C -0.180 4.180 24 O -0.036 6.036 25 H 0.189 0.811 26 H 0.193 0.807 27 H 0.236 0.764 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.394 -6.571 13.291 19.981 hybrid contribution -0.029 0.121 -1.009 1.017 sum -13.423 -6.449 12.282 19.303 Atomic orbital electron populations 1.81373 1.10435 1.06412 1.06725 1.23483 0.89497 0.94864 0.94767 1.16857 0.84479 0.98028 1.00386 1.22178 0.91522 1.00484 1.00654 1.21958 0.98649 0.97029 0.97704 1.22792 0.81069 1.01334 1.02328 1.16626 0.85599 0.80278 0.79748 1.90927 1.21287 1.63766 1.62408 1.46349 1.11520 1.36332 1.41444 1.21230 0.86609 0.92234 0.95332 1.22607 1.01510 0.98577 0.96138 1.20761 0.90558 0.84521 0.99451 1.44097 1.73971 1.06376 1.07061 1.19126 1.11542 1.18381 0.89574 0.91660 1.25064 0.94936 1.00690 0.98818 1.70016 1.12186 1.38160 1.34165 0.86366 0.77018 0.77890 0.85445 1.20862 1.21611 1.21025 1.20840 0.91945 0.93691 0.91389 1.22358 1.01198 0.94447 0.99962 1.84108 1.16133 1.49882 1.53520 0.81060 0.80747 0.76421 0.89458 0.92467 0.92587 0.89153 0.95978 0.93467 0.96072 0.92200 0.92399 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -3.98 18.54 41.84 0.78 -3.21 16 2 C 0.29 2.57 15.89 -22.47 -0.36 2.21 16 3 C 0.06 0.46 7.10 -37.84 -0.27 0.19 16 4 C -0.13 -0.80 10.86 -39.13 -0.42 -1.22 16 5 C -0.13 -1.09 10.58 -39.52 -0.42 -1.51 16 6 C -0.02 -0.21 7.12 -36.60 -0.26 -0.47 16 7 C 0.59 7.95 7.76 -12.70 -0.10 7.85 16 8 O -0.51 -8.43 16.52 5.24 0.09 -8.35 16 9 N -0.71 -9.21 5.07 -54.95 -0.28 -9.49 16 10 C 0.15 2.39 2.41 -67.87 -0.16 2.23 16 11 C -0.15 -2.78 5.66 -26.59 -0.15 -2.93 16 12 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 13 N -0.59 -14.31 3.00 -172.31 -0.52 -14.83 16 14 C -0.26 -6.85 9.58 -15.06 -0.14 -7.00 16 15 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 16 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 17 N -0.90 -25.82 11.20 55.49 0.62 -25.20 16 18 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 23 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 24 O -0.14 -1.37 10.40 4.03 0.04 -1.32 16 25 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 26 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.40 4.31 8.35 -40.82 -0.34 3.97 16 28 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.14 7.93 -51.92 -0.41 0.73 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -30.59 325.95 -6.34 -36.93 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.39 Total: 0.28 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.56 Total: 3.98 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.60 Total: -52.72 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.13 Total: -9.67 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.59 -6.34 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794312282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.111 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds