Wall clock time and date at job start Tue Mar 31 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.33794 * 124.17491 * 90.02322 * 11 10 9 13 13 O 1.21540 * 123.77412 * 359.96173 * 12 11 10 14 14 N 1.34530 * 112.45875 * 179.97438 * 12 11 10 15 15 C 1.47311 * 106.61587 * 0.02562 * 14 12 11 16 16 H 1.09008 * 110.59858 * 241.47211 * 15 14 12 17 17 C 1.52997 * 110.60177 * 118.52831 * 15 14 12 18 18 C 1.50703 * 109.47079 * 66.45057 * 17 15 14 19 19 C 1.38648 * 120.78607 * 269.71812 * 18 17 15 20 20 C 1.38207 * 119.15814 * 179.75483 * 19 18 17 21 21 N 1.31866 * 120.76326 * 0.53503 * 20 19 18 22 22 C 1.31872 * 121.72932 * 359.74048 * 21 20 19 23 23 C 1.38205 * 120.76234 * 359.97438 * 22 21 20 24 24 C 1.34761 * 124.18016 * 269.72444 * 11 10 9 25 25 O 1.21234 * 127.15939 * 0.02562 * 24 11 10 26 26 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 28 28 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 29 29 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 30 30 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 31 31 H 0.96994 * 126.69523 * 179.97438 * 14 12 11 32 32 H 1.08995 * 109.47099 * 186.45015 * 17 15 14 33 33 H 1.08996 * 109.46606 * 306.45151 * 17 15 14 34 34 H 1.08002 * 120.42143 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.61654 * 180.25622 * 20 19 18 36 36 H 1.07993 * 119.62072 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.42054 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 1.1380 -5.5827 -1.1041 13 8 1.3664 -5.1882 -2.2308 14 7 0.4796 -6.7235 -0.8304 15 6 0.4153 -6.8310 0.6374 16 1 0.9327 -7.7275 0.9793 17 6 -1.0385 -6.8320 1.1140 18 6 -1.7228 -8.0869 0.6362 19 6 -2.3780 -8.1167 -0.5854 20 6 -2.9900 -9.2870 -0.9928 21 7 -2.9644 -10.3625 -0.2301 22 6 -2.3557 -10.3687 0.9397 23 6 -1.7171 -9.2370 1.4104 24 6 1.1385 -5.5883 1.1176 25 8 1.3363 -5.2540 2.2660 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8727 -3.6047 -0.8877 30 1 2.8713 -3.6038 0.8923 31 1 0.1172 -7.3522 -1.4739 32 1 -1.0639 -6.7965 2.2030 33 1 -1.5539 -5.9607 0.7099 34 1 -2.4060 -7.2380 -1.2126 35 1 -3.4989 -9.3198 -1.9448 36 1 -2.3563 -11.2686 1.5369 37 1 -1.2200 -9.2485 2.3691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794791630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:57 Heat of formation + Delta-G solvation = -19.992097 kcal Electronic energy + Delta-G solvation = -22362.805456 eV Core-core repulsion = 18912.553708 eV Total energy + Delta-G solvation = -3450.251748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31991 -40.45179 -38.40717 -36.49887 -35.49881 -34.06658 -33.00826 -31.55993 -29.79128 -29.74941 -25.76642 -24.62108 -23.82523 -22.81355 -22.19020 -21.63365 -20.03960 -17.92126 -17.42754 -16.90271 -16.81191 -16.40493 -16.14382 -15.94221 -15.32549 -15.14220 -14.50473 -14.23864 -14.02879 -13.88823 -13.73121 -13.40433 -13.18084 -12.92767 -12.63623 -12.42354 -11.95107 -11.73020 -10.89618 -10.72388 -10.66962 -10.36867 -10.17539 -10.10691 -9.93470 -9.80104 -9.52315 -9.49687 -9.20177 -8.66211 -8.38382 -6.42958 -4.13153 0.77008 0.81373 1.73316 2.41576 3.11200 3.22753 3.43190 3.44875 3.45389 3.63744 3.85631 4.12758 4.31771 4.34655 4.47994 4.52257 4.66827 4.73583 4.79397 5.15248 5.23093 5.32062 5.36687 5.44713 5.51094 5.63353 5.85555 5.93802 5.99559 6.11823 6.33684 6.44694 6.74704 7.14876 7.22644 7.43343 7.52009 7.62131 8.04578 8.28251 8.37320 8.78756 9.59487 10.97974 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.003435 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.748330 B = 8148.879569 C = 8187.678819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.603 4.603 8 H 0.053 0.947 9 C 0.000 4.000 10 C 0.126 3.874 11 N -0.568 5.568 12 C 0.700 3.300 13 O -0.536 6.536 14 N -0.730 5.730 15 C 0.100 3.900 16 H 0.125 0.875 17 C -0.084 4.084 18 C -0.037 4.037 19 C -0.169 4.169 20 C 0.102 3.898 21 N -0.488 5.488 22 C 0.100 3.900 23 C -0.167 4.167 24 C 0.523 3.477 25 O -0.464 6.464 26 H 0.268 0.732 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.435 0.565 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -20.800 2.110 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.900 3.100 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.642 4.642 8 H 0.072 0.928 9 C -0.038 4.038 10 C 0.007 3.993 11 N -0.313 5.313 12 C 0.401 3.599 13 O -0.408 6.408 14 N -0.396 5.396 15 C -0.009 4.009 16 H 0.142 0.858 17 C -0.123 4.123 18 C -0.045 4.045 19 C -0.188 4.188 20 C -0.055 4.055 21 N -0.197 5.197 22 C -0.057 4.057 23 C -0.187 4.187 24 C 0.309 3.691 25 O -0.334 6.334 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.279 0.721 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.855 -19.383 1.853 19.849 hybrid contribution 0.393 -1.247 0.018 1.308 sum -3.461 -20.630 1.872 21.002 Atomic orbital electron populations 1.70786 1.06918 1.30562 1.46044 1.25891 0.96493 1.02805 0.93430 0.83502 0.74874 0.75040 0.76619 1.21285 1.21295 1.20700 1.21827 0.94389 0.91276 1.56698 0.92837 1.19527 0.94915 0.92565 0.96752 1.22073 0.95302 0.78545 1.03332 1.46744 1.53092 1.24429 1.07068 1.15955 0.78700 0.80529 0.84709 1.91017 1.59485 1.69782 1.20547 1.45601 1.61834 1.25244 1.06937 1.21987 0.97356 0.99456 0.82134 0.85799 1.20837 0.92047 0.96142 1.03244 1.20138 0.95431 0.94943 0.94036 1.22197 0.99351 1.00302 0.96987 1.22817 0.95694 0.88110 0.98881 1.67696 1.16962 1.29532 1.05537 1.22793 0.92792 0.97805 0.92317 1.22128 1.01555 0.93572 1.01427 1.20625 0.78532 0.84662 0.85325 1.90806 1.53975 1.70641 1.17961 0.92186 0.96980 0.96679 0.89450 0.89628 0.72144 0.87587 0.88793 0.84436 0.82576 0.82670 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.65 55.43 0.76 -27.23 16 2 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 3 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.60 -17.19 9.11 -34.44 -0.31 -17.51 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.00 0.00 4.61 -27.88 -0.13 -0.12 16 10 C 0.13 2.67 5.64 -4.04 -0.02 2.64 16 11 N -0.57 -10.09 2.60 -120.72 -0.31 -10.41 16 12 C 0.70 11.72 8.62 -88.01 -0.76 10.96 16 13 O -0.54 -11.03 17.48 5.33 0.09 -10.94 16 14 N -0.73 -8.30 5.92 -59.19 -0.35 -8.65 16 15 C 0.10 1.03 3.66 -68.21 -0.25 0.78 16 16 H 0.12 0.95 8.14 -51.92 -0.42 0.53 16 17 C -0.08 -0.75 5.18 -27.88 -0.14 -0.90 16 18 C -0.04 -0.30 5.01 -104.32 -0.52 -0.82 16 19 C -0.17 -1.35 9.09 -39.44 -0.36 -1.71 16 20 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 21 N -0.49 -4.65 10.36 -13.25 -0.14 -4.79 16 22 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 23 C -0.17 -1.18 9.82 -39.44 -0.39 -1.56 16 24 C 0.52 8.06 7.66 -10.56 -0.08 7.98 16 25 O -0.46 -8.38 17.75 5.60 0.10 -8.28 16 26 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 27 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 28 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 29 H 0.09 1.85 7.86 -51.93 -0.41 1.44 16 30 H 0.09 1.75 8.00 -51.93 -0.42 1.34 16 31 H 0.43 3.96 8.36 -40.82 -0.34 3.61 16 32 H 0.11 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -35.52 326.99 -7.91 -43.44 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.45 Total: 0.31 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -3.46 Total: 1.40 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.05 Total: -51.08 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.19 Total: -19.22 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.52 -7.91 -43.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794791630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.445 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds