Wall clock time and date at job start Tue Mar 31 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.33788 * 124.17508 * 90.02295 * 11 10 9 13 13 O 1.21541 * 123.77646 * 359.96590 * 12 11 10 14 14 N 1.34526 * 112.45748 * 179.97438 * 12 11 10 15 15 C 1.47311 * 106.61922 * 0.02562 * 14 12 11 16 16 H 1.09005 * 110.60022 * 118.67570 * 15 14 12 17 17 C 1.53003 * 110.59864 * 241.47294 * 15 14 12 18 18 C 1.50698 * 109.46748 * 293.54342 * 17 15 14 19 19 C 1.38655 * 120.79007 * 269.71641 * 18 17 15 20 20 C 1.38206 * 119.15989 * 179.80224 * 19 18 17 21 21 N 1.31869 * 120.76114 * 0.48863 * 20 19 18 22 22 C 1.31865 * 121.73201 * 359.74402 * 21 20 19 23 23 C 1.38203 * 120.76317 * 0.02562 * 22 21 20 24 24 C 1.34757 * 124.17796 * 269.72691 * 11 10 9 25 25 O 1.21235 * 127.15948 * 359.97438 * 24 11 10 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 0.96999 * 126.68720 * 179.97438 * 14 12 11 32 32 H 1.08994 * 109.47125 * 53.54308 * 17 15 14 33 33 H 1.09004 * 109.46770 * 173.54929 * 17 15 14 34 34 H 1.07995 * 120.42011 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.61762 * 180.20807 * 20 19 18 36 36 H 1.08002 * 119.61704 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.42089 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1368 -5.5822 -1.1054 13 8 1.3644 -5.1874 -2.2321 14 7 0.4786 -6.7231 -0.8316 15 6 0.4155 -6.8313 0.6361 16 1 -0.6202 -6.8347 0.9763 17 6 1.1419 -8.0899 1.1149 18 6 0.3991 -9.3109 0.6371 19 6 -0.5965 -9.8848 1.4129 20 6 -1.2590 -11.0017 0.9400 21 7 -0.9471 -11.5264 -0.2289 22 6 -0.0029 -11.0102 -0.9910 23 6 0.6992 -9.8908 -0.5861 24 6 1.1390 -5.5888 1.1163 25 8 1.3385 -5.2554 2.2647 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.1157 -7.3515 -1.4753 32 1 2.1547 -8.1001 0.7123 33 1 1.1837 -8.0931 2.2041 34 1 -0.8536 -9.4621 2.3729 35 1 -2.0381 -11.4527 1.5367 36 1 0.2244 -11.4676 -1.9426 37 1 1.4717 -9.4728 -1.2145 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794791631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:59 Heat of formation + Delta-G solvation = -40.773882 kcal Electronic energy + Delta-G solvation = -22213.110871 eV Core-core repulsion = 18761.957957 eV Total energy + Delta-G solvation = -3451.152914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.49555 -41.02633 -39.68372 -37.58898 -36.89169 -35.30570 -34.32196 -32.08898 -31.80325 -30.55471 -27.50538 -26.16300 -24.39206 -24.01085 -23.59518 -22.37949 -21.33327 -19.22187 -18.62692 -18.16404 -17.60936 -17.28376 -17.20570 -16.61077 -16.53665 -16.34010 -16.17712 -15.49068 -15.24204 -14.96508 -14.91036 -14.49153 -14.39454 -14.14386 -13.61861 -13.57113 -13.15331 -12.85855 -12.76028 -12.30469 -12.13567 -12.08764 -11.98909 -11.45877 -11.31809 -10.86090 -10.61840 -10.60750 -10.40467 -10.31443 -10.03330 -8.25774 -6.38816 0.21738 0.25388 0.59758 1.20581 1.40920 1.44557 1.52299 1.96007 2.13035 2.39680 2.84654 2.89494 3.08662 3.60998 3.63652 3.69634 3.81129 3.96292 4.11154 4.22567 4.29431 4.40843 4.46955 4.53551 4.60707 4.72204 4.75061 4.88011 4.97360 5.07861 5.35196 5.39987 5.42776 5.71211 5.75483 5.82980 6.07017 6.10190 6.35619 6.75346 7.07885 7.09087 7.31143 8.86844 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.037796 B = 0.003208 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.638693 B = 8725.005786 C = 8990.676925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.024 3.976 10 C 0.134 3.866 11 N -0.579 5.579 12 C 0.698 3.302 13 O -0.581 6.581 14 N -0.703 5.703 15 C 0.114 3.886 16 H 0.154 0.846 17 C -0.071 4.071 18 C -0.044 4.044 19 C -0.162 4.162 20 C 0.088 3.912 21 N -0.516 5.516 22 C 0.089 3.911 23 C -0.169 4.169 24 C 0.519 3.481 25 O -0.492 6.492 26 H 0.265 0.735 27 H -0.012 1.012 28 H -0.008 1.008 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.448 0.552 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -23.419 2.816 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.090 0.910 9 C -0.014 4.014 10 C 0.014 3.986 11 N -0.323 5.323 12 C 0.399 3.601 13 O -0.457 6.457 14 N -0.369 5.369 15 C 0.006 3.994 16 H 0.171 0.829 17 C -0.109 4.109 18 C -0.052 4.052 19 C -0.182 4.182 20 C -0.068 4.068 21 N -0.226 5.226 22 C -0.067 4.067 23 C -0.189 4.189 24 C 0.308 3.692 25 O -0.364 6.364 26 H 0.074 0.926 27 H 0.006 0.994 28 H 0.010 0.990 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.295 0.705 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.188 0.812 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.291 -23.579 2.574 23.721 hybrid contribution 0.343 1.631 -0.171 1.676 sum 0.052 -21.948 2.403 22.079 Atomic orbital electron populations 1.70108 1.08047 1.28131 1.50924 1.26038 0.95809 1.03704 0.94203 0.85379 0.78178 0.77363 0.79422 1.18983 1.20848 1.18706 1.21458 0.93956 0.91372 1.51703 0.91014 1.19176 0.94451 0.92960 0.94821 1.21735 0.94374 0.79007 1.03506 1.46673 1.53384 1.23766 1.08494 1.16047 0.78769 0.81534 0.83728 1.90981 1.61350 1.71284 1.22065 1.45432 1.59979 1.23489 1.07961 1.22139 1.03463 0.93036 0.80779 0.82882 1.20777 0.98730 0.87361 1.04014 1.20114 0.95419 0.95358 0.94303 1.22379 0.96360 0.97311 1.02149 1.23182 0.98335 0.93168 0.92096 1.67697 1.15993 1.32368 1.06534 1.23107 0.91048 0.93127 0.99437 1.22292 1.01916 0.97634 0.97032 1.21344 0.77854 0.85652 0.84381 1.90785 1.54882 1.71844 1.18861 0.92592 0.99358 0.98951 0.88866 0.89579 0.70453 0.88816 0.86118 0.82195 0.80898 0.81227 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 1.30 5.30 29.85 0.16 1.46 16 10 C 0.13 5.74 5.64 86.38 0.49 6.22 16 11 N -0.58 -20.66 2.60 -773.12 -2.01 -22.68 16 12 C 0.70 23.34 8.62 179.44 1.55 24.89 16 13 O -0.58 -24.36 17.48 -3.84 -0.07 -24.43 16 14 N -0.70 -14.92 5.92 -459.59 -2.72 -17.64 16 15 C 0.11 2.10 3.69 44.37 0.16 2.27 16 16 H 0.15 2.17 8.14 -2.38 -0.02 2.15 16 17 C -0.07 -0.87 5.15 29.85 0.15 -0.72 16 18 C -0.04 -0.51 5.01 -19.67 -0.10 -0.60 16 19 C -0.16 -1.71 9.82 22.36 0.22 -1.49 16 20 C 0.09 1.14 11.18 84.68 0.95 2.09 16 21 N -0.52 -8.71 10.36 -195.85 -2.03 -10.73 16 22 C 0.09 1.22 11.18 84.68 0.95 2.16 16 23 C -0.17 -1.99 9.07 22.36 0.20 -1.79 16 24 C 0.52 15.62 7.64 87.94 0.67 16.29 16 25 O -0.49 -17.50 17.75 -2.89 -0.05 -17.55 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.09 3.77 8.00 -2.39 -0.02 3.75 16 30 H 0.09 3.64 7.86 -2.39 -0.02 3.62 16 31 H 0.45 7.27 8.35 -92.71 -0.77 6.50 16 32 H 0.09 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.12 1.24 8.10 -2.38 -0.02 1.22 16 34 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -78.33 328.24 1.85 -76.48 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.33 Total: 7.35 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 6.09 Total: 20.14 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -6.48 Total: -108.45 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.12 Total: -41.98 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -78.33 1.85 -76.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794791631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.711 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds