Wall clock time and date at job start Tue Mar 31 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42104 * 108.57834 * 2 1 4 4 O 1.42100 * 108.57936 * 228.97792 * 2 1 3 5 5 C 1.81394 * 101.92448 * 114.48789 * 2 1 3 6 6 C 1.53001 * 109.47449 * 180.02562 * 5 2 1 7 7 N 1.46503 * 109.47074 * 180.02562 * 6 5 2 8 8 C 1.34775 * 119.99416 * 269.99533 * 7 6 5 9 9 O 1.21285 * 119.99602 * 185.94851 * 8 7 6 10 10 C 1.50694 * 120.00625 * 5.95345 * 8 7 6 11 11 C 1.53001 * 109.47664 * 180.15690 * 10 8 7 12 12 C 1.50694 * 109.47341 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99970 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00309 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99554 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00260 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47378 * 60.00171 * 16 14 12 18 18 H 1.48500 * 109.47345 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47396 * 299.99938 * 16 14 12 20 20 C 1.46493 * 120.00043 * 90.00161 * 7 6 5 21 21 C 1.53006 * 117.49798 * 196.32865 * 20 7 6 22 22 C 1.52999 * 60.00064 * 252.51196 * 21 20 7 23 23 H 1.08993 * 109.47123 * 305.50983 * 1 2 3 24 24 H 1.09001 * 109.47203 * 65.51168 * 1 2 3 25 25 H 1.09004 * 109.46546 * 185.50904 * 1 2 3 26 26 H 1.09005 * 109.46795 * 60.00234 * 5 2 1 27 27 H 1.09004 * 109.47468 * 300.00132 * 5 2 1 28 28 H 1.08997 * 109.47334 * 60.00219 * 6 5 2 29 29 H 1.09004 * 109.46758 * 300.00401 * 6 5 2 30 30 H 1.09008 * 109.46992 * 300.15712 * 10 8 7 31 31 H 1.09000 * 109.47412 * 60.15276 * 10 8 7 32 32 H 1.08996 * 109.46979 * 300.00431 * 11 10 8 33 33 H 1.08998 * 109.46819 * 60.00100 * 11 10 8 34 34 H 0.96998 * 119.99623 * 180.02562 * 15 14 12 35 35 H 1.08992 * 115.55292 * 342.03481 * 20 7 6 36 36 H 1.08998 * 117.49466 * 0.02562 * 21 20 7 37 37 H 1.09000 * 117.50046 * 145.01742 * 21 20 7 38 38 H 1.08999 * 117.49493 * 252.51310 * 22 21 20 39 39 H 1.08999 * 117.52100 * 107.48648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8184 1.7984 7 7 4.0081 -1.4131 3.1026 8 6 4.1468 -0.6246 4.1868 9 8 4.5028 -1.1030 5.2429 10 6 3.8595 0.8513 4.0870 11 6 4.0962 1.5103 5.4474 12 6 3.8094 2.9863 5.3473 13 1 3.4906 3.4119 4.4073 14 6 3.9550 3.7936 6.4555 15 7 4.3447 3.2755 7.5998 16 14 3.5989 5.6231 6.3316 17 1 2.1855 5.8258 5.9234 18 1 3.8300 6.2629 7.6516 19 1 4.4986 6.2353 5.3211 20 6 4.1601 -2.8647 3.2282 21 6 4.0927 -3.4630 4.6348 22 6 5.4322 -3.3864 3.8995 23 1 -0.3633 0.5969 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3632 -1.0230 0.0987 26 1 1.7611 -1.7370 1.6663 27 1 1.7611 -0.1171 2.4043 28 1 4.1328 0.1830 1.7474 29 1 4.1336 -1.4367 1.0093 30 1 4.5202 1.3008 3.3456 31 1 2.8222 1.0001 3.7868 32 1 3.4355 1.0608 6.1886 33 1 5.1335 1.3616 5.7474 34 1 4.4468 3.8433 8.3795 35 1 3.7450 -3.4534 2.4102 36 1 3.9348 -2.7765 5.4666 37 1 3.6330 -4.4455 4.7424 38 1 5.8537 -4.3185 3.5233 39 1 6.1562 -2.6496 4.2473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812537551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:17 Heat of formation + Delta-G solvation = -70.611055 kcal Electronic energy + Delta-G solvation = -21509.576885 eV Core-core repulsion = 18160.281334 eV Total energy + Delta-G solvation = -3349.295550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14554 -37.19058 -36.37934 -36.23933 -35.25815 -33.37515 -30.95057 -30.53539 -29.76950 -25.98615 -23.97082 -23.08722 -22.19552 -20.86058 -19.11238 -18.63620 -17.44953 -16.65517 -16.45089 -16.28107 -16.12209 -15.67696 -14.99744 -14.43685 -14.32753 -14.11892 -13.65354 -13.49151 -13.39266 -13.31047 -12.84881 -12.37300 -12.29194 -12.19181 -12.18066 -11.73170 -11.37437 -11.30477 -11.20180 -11.01360 -10.87169 -10.79112 -10.61801 -10.25255 -9.96885 -9.62287 -9.15007 -8.88822 -8.35398 -8.29362 -5.97307 -4.01784 -0.30203 2.45687 2.95845 2.98576 3.34972 3.39555 3.40922 3.42694 3.75541 3.99385 4.36972 4.39943 4.46721 4.49636 4.66560 4.84480 4.96048 5.04535 5.14516 5.21151 5.34429 5.37322 5.37983 5.57480 5.67410 5.84118 6.07149 6.14032 6.22983 6.50386 6.80413 6.86968 7.56642 7.72238 7.81190 8.04053 8.36009 8.61966 9.06214 9.62183 11.13527 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.005449 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.895599 B = 5137.128700 C = 7192.812031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.929 6.929 4 O -0.942 6.942 5 C -0.640 4.640 6 C 0.130 3.870 7 N -0.591 5.591 8 C 0.512 3.488 9 O -0.517 6.517 10 C -0.134 4.134 11 C 0.038 3.962 12 C -0.529 4.529 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.065 3.935 21 C -0.192 4.192 22 C -0.187 4.187 23 H 0.132 0.868 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -12.223 -15.320 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.926 6.926 4 O -0.939 6.939 5 C -0.769 4.769 6 C 0.005 3.995 7 N -0.325 5.325 8 C 0.303 3.697 9 O -0.392 6.392 10 C -0.174 4.174 11 C 0.001 3.999 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.039 4.039 21 C -0.230 4.230 22 C -0.226 4.226 23 H 0.150 0.850 24 H 0.148 0.852 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.160 0.840 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.411 -12.113 -15.195 20.462 hybrid contribution -0.954 0.627 0.521 1.255 sum -7.365 -11.487 -14.674 20.037 Atomic orbital electron populations 1.30259 1.26670 1.11552 1.12010 1.07784 0.78517 0.75953 0.77362 1.93655 1.78763 1.33959 1.86223 1.93598 1.79143 1.67235 1.53895 1.30962 1.07408 1.14659 1.23902 1.21139 0.89920 1.01616 0.86849 1.47490 1.71677 1.05095 1.08192 1.21694 0.75553 0.90117 0.82311 1.90519 1.44777 1.75145 1.28777 1.22024 1.02021 0.88528 1.04814 1.18897 0.98325 0.94083 0.88608 1.21192 1.46336 0.92997 0.96183 0.92476 1.25012 0.95203 0.98656 0.95394 1.69988 1.46636 1.35646 1.00605 0.86655 0.78831 0.85315 0.77169 1.20228 1.21311 1.20145 1.21644 1.03127 0.81283 0.97892 1.23838 0.99823 1.02029 0.97267 1.23234 0.92177 1.02516 1.04653 0.84973 0.85246 0.85435 0.84610 0.83992 0.88003 0.88787 0.89863 0.90258 0.95835 0.95759 0.92897 0.85888 0.84318 0.89658 0.89008 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.14 10.62 101.05 1.07 -2.07 16 2 S 2.42 19.50 5.36 -107.50 -0.58 18.92 16 3 O -0.93 -11.69 18.10 -57.83 -1.05 -12.74 16 4 O -0.94 -10.27 18.10 -57.83 -1.05 -11.32 16 5 C -0.64 -5.05 6.13 37.16 0.23 -4.82 16 6 C 0.13 1.41 5.22 -4.04 -0.02 1.39 16 7 N -0.59 -8.30 2.84 -166.11 -0.47 -8.77 16 8 C 0.51 9.51 7.46 -10.99 -0.08 9.43 16 9 O -0.52 -11.31 11.73 5.55 0.07 -11.24 16 10 C -0.13 -2.67 4.34 -27.89 -0.12 -2.79 16 11 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 12 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.06 0.81 6.61 -67.93 -0.45 0.36 16 21 C -0.19 -2.67 9.63 -26.73 -0.26 -2.92 16 22 C -0.19 -2.48 9.87 -26.73 -0.26 -2.74 16 23 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.14 1.12 6.90 -51.92 -0.36 0.76 16 28 H 0.10 1.14 6.48 -51.93 -0.34 0.80 16 29 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.08 1.54 7.22 -51.92 -0.37 1.17 16 31 H 0.08 1.40 6.90 -51.93 -0.36 1.04 16 32 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.14 2.46 5.22 -52.12 -0.27 2.18 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.57 7.60 -51.93 -0.39 1.18 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -38.38 336.60 -8.57 -46.94 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.86 Total: -0.19 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.42 Total: -16.83 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.26 Total: -35.23 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -2.03 Total: -35.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 19.50 SS G_CDS: -0.58 Total: 18.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.38 -8.57 -46.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812537551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.669 kcal (2) G-P(sol) polarization free energy of solvation -38.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds