Wall clock time and date at job start Tue Mar 31 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99747 * 2 1 4 4 C 1.52998 * 109.46763 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47321 * 64.99973 * 4 3 2 6 6 C 1.36803 * 120.00088 * 264.34454 * 5 4 3 7 7 H 1.08000 * 120.00134 * 131.89508 * 6 5 4 8 8 C 1.39023 * 120.00400 * 311.89983 * 6 5 4 9 9 N 1.31389 * 119.99828 * 3.32360 * 8 6 5 10 10 Si 1.86801 * 120.00392 * 183.32186 * 8 6 5 11 11 H 1.48499 * 109.47020 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47137 * 120.00302 * 10 8 6 13 13 H 1.48501 * 109.47164 * 240.00213 * 10 8 6 14 14 C 1.34782 * 120.00017 * 84.34513 * 5 4 3 15 15 O 1.21716 * 119.99446 * 4.78325 * 14 5 4 16 16 C 1.47087 * 119.99825 * 184.77723 * 14 5 4 17 17 C 1.38630 * 120.03979 * 174.13707 * 16 14 5 18 18 C 1.40560 * 118.26004 * 179.97438 * 17 16 14 19 19 C 1.38356 * 133.39308 * 179.97438 * 18 17 16 20 20 C 1.39646 * 106.99598 * 180.02562 * 19 18 17 21 21 C 1.35665 * 108.09539 * 0.02562 * 20 19 18 22 22 N 1.35966 * 109.06265 * 359.97438 * 21 20 19 23 23 C 1.36893 * 132.40819 * 180.02562 * 22 21 20 24 24 N 1.29802 * 121.49430 * 179.73086 * 23 22 21 25 25 H 1.08996 * 109.47005 * 60.00029 * 1 2 3 26 26 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46783 * 300.00397 * 1 2 3 28 28 H 1.08998 * 109.47117 * 60.00118 * 3 2 1 29 29 H 1.08998 * 109.47369 * 299.99884 * 3 2 1 30 30 H 1.09007 * 109.47557 * 305.00072 * 4 3 2 31 31 H 1.08998 * 109.47164 * 184.99942 * 4 3 2 32 32 H 0.96996 * 119.99804 * 179.97438 * 9 8 6 33 33 H 1.08006 * 120.87155 * 0.02562 * 17 16 14 34 34 H 1.08000 * 126.49777 * 359.97102 * 19 18 17 35 35 H 1.08005 * 125.95648 * 180.02562 * 20 19 18 36 36 H 1.07995 * 125.47076 * 180.02562 * 21 20 19 37 37 H 1.08000 * 119.25908 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2092 -0.7832 -1.3015 7 1 3.7932 -1.3732 -2.1048 8 6 4.9808 -1.3929 -0.3188 9 7 5.4323 -0.6877 0.6936 10 14 5.3756 -3.2148 -0.4378 11 1 4.7533 -3.7772 -1.6632 12 1 6.8478 -3.3992 -0.5003 13 1 4.8391 -3.9166 0.7559 14 6 4.1537 1.3202 -2.3524 15 8 4.0316 2.5294 -2.2864 16 6 4.4944 0.6842 -3.6341 17 6 4.5572 1.4449 -4.7913 18 6 4.8868 0.7989 -5.9954 19 6 5.0342 1.2367 -7.2996 20 6 5.3734 0.1216 -8.0686 21 6 5.4272 -0.9565 -7.2468 22 7 5.1337 -0.5633 -5.9788 23 6 5.0526 -1.2471 -4.7956 24 7 4.7537 -0.6465 -3.6844 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1766 0.0902 32 1 5.9703 -1.1131 1.3794 33 1 4.3590 2.5064 -4.7682 34 1 4.9096 2.2488 -7.6554 35 1 5.5604 0.1179 -9.1324 36 1 5.6658 -1.9649 -7.5508 37 1 5.2455 -2.3097 -4.7857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822288159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:43 Heat of formation + Delta-G solvation = 33.515885 kcal Electronic energy + Delta-G solvation = -23168.287293 eV Core-core repulsion = 19720.355825 eV Total energy + Delta-G solvation = -3447.931468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.94716 -38.87416 -37.18886 -36.52047 -34.76702 -32.62333 -31.53266 -30.60490 -29.36497 -27.73238 -25.82268 -24.72645 -23.99370 -23.01090 -21.51563 -20.75905 -19.38101 -18.16480 -17.42292 -16.28922 -15.66192 -15.51488 -15.32814 -15.23247 -14.86729 -14.39821 -14.26446 -14.00022 -13.93005 -13.49464 -13.08220 -12.30560 -12.23645 -12.14979 -11.90859 -11.78273 -11.49353 -11.22478 -11.00777 -10.95328 -10.81078 -10.26540 -10.11823 -10.08571 -9.46077 -9.07394 -8.92360 -8.66013 -8.45731 -7.42520 -7.05625 -6.21044 -3.93466 0.93777 1.66375 2.92006 3.12136 3.19658 3.27976 3.32321 3.54497 4.16348 4.41514 4.50443 4.55770 4.68818 4.93678 5.10132 5.18893 5.38470 5.45468 5.67065 5.72783 5.77606 5.88421 5.92508 5.98788 6.05149 6.10205 6.24173 6.35129 6.41713 6.59874 6.79411 6.92913 7.01350 7.36828 7.45091 7.72855 7.85743 8.05127 8.27586 8.59894 9.18168 9.45869 9.89868 10.80429 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.006220 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.988597 B = 4500.226797 C = 5472.948251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.106 3.894 5 N -0.402 5.402 6 C -0.280 4.280 7 H 0.110 0.890 8 C 0.039 3.961 9 N -0.880 5.880 10 Si 0.923 3.077 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.511 3.489 15 O -0.606 6.606 16 C 0.068 3.932 17 C -0.090 4.090 18 C 0.050 3.950 19 C -0.205 4.205 20 C -0.147 4.147 21 C -0.055 4.055 22 N -0.383 5.383 23 C 0.272 3.728 24 N -0.404 5.404 25 H 0.030 0.970 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.267 0.733 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 -2.008 -9.322 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.017 4.017 5 N -0.117 5.117 6 C -0.409 4.409 7 H 0.127 0.873 8 C -0.164 4.164 9 N -0.519 5.519 10 Si 0.751 3.249 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.300 3.700 15 O -0.494 6.494 16 C -0.051 4.051 17 C -0.112 4.112 18 C -0.057 4.057 19 C -0.231 4.231 20 C -0.171 4.171 21 C -0.186 4.186 22 N -0.056 5.056 23 C -0.009 4.009 24 N -0.115 5.115 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.146 0.854 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.903 -2.132 -7.946 8.724 hybrid contribution 0.099 -0.364 -0.697 0.793 sum -2.804 -2.496 -8.644 9.424 Atomic orbital electron populations 1.22642 0.83440 1.01730 0.98803 1.88140 1.17355 1.27750 1.95035 1.23042 0.96559 0.84290 0.98637 1.21746 0.88934 0.99502 0.91481 1.43293 1.53412 1.07933 1.07021 1.19867 1.28102 0.82012 1.10926 0.87253 1.25511 0.95404 0.99876 0.95588 1.69672 1.34619 1.36462 1.11117 0.85917 0.77913 0.82787 0.78300 1.19058 1.21046 1.21069 1.17713 0.82498 0.85754 0.84027 1.90661 1.59343 1.13546 1.85843 1.21208 1.00584 0.88500 0.94805 1.21581 0.99134 1.01660 0.88868 1.18948 1.07842 0.83035 0.95897 1.20945 1.12206 0.99587 0.90327 1.20871 1.04981 0.92012 0.99189 1.21793 1.14259 1.00701 0.81853 1.43427 1.44629 1.09293 1.08221 1.25480 0.97549 0.99295 0.78592 1.69489 1.10756 1.10742 1.20516 0.95099 0.90411 0.95113 0.94051 0.94346 0.85423 0.91179 0.92285 0.82780 0.83904 0.83936 0.81506 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.85 10.45 -35.23 -0.37 -8.22 16 3 C 0.05 1.10 6.24 37.16 0.23 1.34 16 4 C 0.11 2.59 5.27 -4.04 -0.02 2.56 16 5 N -0.40 -10.40 2.46 -116.16 -0.29 -10.68 16 6 C -0.28 -7.23 7.23 -15.04 -0.11 -7.33 16 7 H 0.11 2.80 5.96 -52.49 -0.31 2.49 16 8 C 0.04 1.02 5.35 -17.45 -0.09 0.92 16 9 N -0.88 -23.62 10.99 55.50 0.61 -23.01 16 10 Si 0.92 20.22 29.55 -169.99 -5.02 15.19 16 11 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.51 13.04 7.54 -12.67 -0.10 12.94 16 15 O -0.61 -16.16 16.00 5.17 0.08 -16.08 16 16 C 0.07 1.54 6.68 -82.44 -0.55 0.99 16 17 C -0.09 -1.76 9.72 -38.56 -0.37 -2.14 16 18 C 0.05 0.86 6.78 -83.95 -0.57 0.29 16 19 C -0.21 -3.00 10.98 -39.01 -0.43 -3.43 16 20 C -0.15 -1.85 10.80 -39.98 -0.43 -2.28 16 21 C -0.06 -0.71 11.62 -16.64 -0.19 -0.90 16 22 N -0.38 -6.11 2.95 -62.16 -0.18 -6.30 16 23 C 0.27 4.55 12.16 -89.23 -1.09 3.46 16 24 N -0.40 -8.50 6.40 -10.43 -0.07 -8.57 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.13 3.32 5.52 -51.93 -0.29 3.04 16 31 H 0.07 1.71 7.53 -51.93 -0.39 1.32 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.15 2.90 7.67 -52.48 -0.40 2.50 16 34 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -31.61 319.43 -7.36 -38.97 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.33 Total: 5.85 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -2.61 Total: 8.04 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.07 Total: -48.57 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.29 Total: -24.30 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.61 -7.36 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822288159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.486 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds