Wall clock time and date at job start Tue Mar 31 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99659 * 2 1 4 4 H 1.48499 * 109.47396 * 272.44001 * 3 2 1 5 5 H 1.48498 * 109.47363 * 32.44182 * 3 2 1 6 6 H 1.48500 * 109.47368 * 152.44129 * 3 2 1 7 7 C 1.40032 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99770 * 347.70429 * 7 2 1 9 9 C 1.41540 * 119.99878 * 167.69933 * 7 2 1 10 10 C 1.41172 * 120.99735 * 329.44527 * 9 7 2 11 11 C 1.37588 * 119.01353 * 180.02562 * 10 9 7 12 12 N 1.32084 * 121.11173 * 0.02562 * 11 10 9 13 13 C 1.32466 * 122.23061 * 359.97438 * 12 11 10 14 14 N 1.39467 * 119.58127 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99776 * 5.52821 * 14 13 12 16 16 O 1.21278 * 120.00092 * 355.14242 * 15 14 13 17 17 C 1.50705 * 119.99594 * 175.14635 * 15 14 13 18 18 H 1.08997 * 109.87366 * 319.55177 * 17 15 14 19 19 C 1.54320 * 110.01458 * 80.66009 * 17 15 14 20 20 C 1.55445 * 102.96929 * 141.67619 * 19 17 15 21 21 C 1.54904 * 101.45538 * 324.51635 * 20 19 17 22 22 N 1.47026 * 109.87715 * 198.54401 * 17 15 14 23 23 C 1.34775 * 125.65091 * 61.46719 * 22 17 15 24 24 O 1.21284 * 120.00085 * 359.97438 * 23 22 17 25 25 C 1.38601 * 120.83836 * 0.26680 * 13 12 11 26 26 H 0.97000 * 120.00273 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.49192 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.44712 * 179.97438 * 11 10 9 29 29 H 0.97002 * 120.00089 * 185.52277 * 14 13 12 30 30 H 1.09000 * 110.71918 * 260.04222 * 19 17 15 31 31 H 1.09004 * 110.71749 * 23.13494 * 19 17 15 32 32 H 1.08997 * 111.11822 * 206.46020 * 20 19 17 33 33 H 1.08998 * 111.01103 * 82.52646 * 20 19 17 34 34 H 1.08995 * 110.37005 * 278.11400 * 21 20 19 35 35 H 1.09000 * 110.36747 * 155.89757 * 21 20 19 36 36 H 1.08004 * 120.00293 * 179.97438 * 23 22 17 37 37 H 1.08010 * 120.60221 * 179.73084 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4372 2.0763 -1.3988 5 1 1.4656 2.6372 0.7510 6 1 3.5638 1.4260 0.6477 7 6 2.0077 -1.2127 0.0005 8 1 1.4863 -2.1372 0.2001 9 6 3.3987 -1.2268 -0.2606 10 6 3.9893 -0.2638 -1.1072 11 6 5.3455 -0.3160 -1.3333 12 7 6.0953 -1.2481 -0.7734 13 6 5.5904 -2.1739 0.0282 14 7 6.4333 -3.1328 0.5895 15 6 7.7659 -3.0487 0.4061 16 8 8.2254 -2.1916 -0.3185 17 6 8.6849 -4.0198 1.1016 18 1 8.3401 -4.1909 2.1213 19 6 8.7239 -5.3554 0.3296 20 6 10.2146 -5.7810 0.4439 21 6 10.9320 -4.4097 0.3778 22 7 10.0547 -3.4861 1.1200 23 6 10.4440 -2.3417 1.7162 24 8 9.6323 -1.6562 2.3012 25 6 4.2340 -2.2054 0.3115 26 1 -0.4850 0.8400 -0.0004 27 1 3.3854 0.5020 -1.5712 28 1 5.8046 0.4171 -1.9801 29 1 6.0606 -3.8602 1.1118 30 1 8.0751 -6.0930 0.8020 31 1 8.4416 -5.2068 -0.7127 32 1 10.5071 -6.4157 -0.3925 33 1 10.4074 -6.2774 1.3950 34 1 11.0353 -4.0851 -0.6575 35 1 11.9101 -4.4699 0.8552 36 1 11.4787 -2.0352 1.6731 37 1 3.8256 -2.9647 0.9622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830367606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:19 Heat of formation + Delta-G solvation = -19.272927 kcal Electronic energy + Delta-G solvation = -22572.283936 eV Core-core repulsion = 19122.063373 eV Total energy + Delta-G solvation = -3450.220562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.59029 -39.13528 -37.83972 -37.01333 -34.45654 -33.64249 -31.79398 -31.28834 -30.23834 -28.50757 -25.97161 -24.73140 -22.84505 -21.93189 -21.83122 -20.73221 -19.31412 -18.10440 -17.52283 -17.19523 -16.29299 -15.94690 -15.45301 -14.97188 -14.68879 -14.29941 -14.25436 -14.06679 -13.63610 -13.54313 -13.16687 -13.00246 -12.82339 -12.60777 -12.47504 -11.79587 -11.63789 -11.51027 -11.21641 -11.17958 -10.78960 -10.65696 -9.95647 -9.91615 -9.70283 -9.64986 -9.34546 -8.77050 -8.23585 -7.83335 -7.21867 -7.01179 -4.71338 2.29504 2.60456 2.65239 2.88695 3.10088 3.20975 3.25022 3.34895 3.53959 3.95366 4.15550 4.26355 4.57721 4.61869 4.80673 4.87300 4.95088 5.16555 5.28028 5.41771 5.42949 5.52243 5.53792 5.75033 5.83724 6.01840 6.31747 6.36834 6.46635 6.56054 7.04573 7.11423 7.17763 7.35280 7.61580 7.77000 8.01366 8.07982 8.23813 8.44180 8.65838 8.73092 9.46436 10.00265 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.003909 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.779106 B = 7161.813121 C = 7533.035687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.086 3.914 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.440 4.440 8 H 0.094 0.906 9 C 0.129 3.871 10 C -0.301 4.301 11 C 0.137 3.863 12 N -0.553 5.553 13 C 0.362 3.638 14 N -0.660 5.660 15 C 0.497 3.503 16 O -0.465 6.465 17 C 0.114 3.886 18 H 0.095 0.905 19 C -0.122 4.122 20 C -0.130 4.130 21 C 0.101 3.899 22 N -0.610 5.610 23 C 0.511 3.489 24 O -0.537 6.537 25 C -0.291 4.291 26 H 0.288 0.712 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.407 0.593 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.603 -11.522 1.858 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.121 3.879 10 C -0.324 4.324 11 C -0.016 4.016 12 N -0.272 5.272 13 C 0.137 3.863 14 N -0.306 5.306 15 C 0.279 3.721 16 O -0.333 6.333 17 C 0.006 3.994 18 H 0.113 0.887 19 C -0.161 4.161 20 C -0.168 4.168 21 C -0.022 4.022 22 N -0.348 5.348 23 C 0.281 3.719 24 O -0.410 6.410 25 C -0.316 4.316 26 H 0.098 0.902 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.242 0.758 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 18.278 -10.338 1.571 21.058 hybrid contribution -0.997 0.393 0.370 1.133 sum 17.281 -9.946 1.941 20.033 Atomic orbital electron populations 1.69604 1.08046 1.30511 1.34810 1.26153 0.94822 1.01814 0.90580 0.86260 0.80926 0.79328 0.79171 1.19395 1.21889 1.16780 1.19460 0.90758 0.95750 1.41040 0.88823 1.17681 0.93274 0.89396 0.87563 1.21931 0.96291 1.06160 1.08009 1.21831 0.90250 0.94199 0.95343 1.67311 1.38651 1.06527 1.14731 1.18081 0.86859 0.89076 0.92327 1.43434 1.06108 1.28022 1.53061 1.20766 0.82615 0.85980 0.82715 1.90773 1.74788 1.33490 1.34203 1.21533 0.84294 0.93044 1.00536 0.88675 1.22674 0.97879 0.93961 1.01549 1.22821 0.94367 0.96290 1.03315 1.22333 0.93906 0.88750 0.97173 1.48817 1.07763 1.23822 1.54367 1.22304 0.94116 0.78169 0.77261 1.90776 1.56335 1.51459 1.42449 1.21207 0.91135 1.08058 1.11234 0.90194 0.87350 0.85389 0.75822 0.89013 0.89790 0.89339 0.90179 0.90901 0.90094 0.84969 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.25 13.92 55.55 0.77 -20.48 16 2 C 0.09 2.26 5.48 -17.34 -0.10 2.17 16 3 Si 0.92 21.25 24.42 -169.99 -4.15 17.10 16 4 H -0.27 -5.97 6.67 56.52 0.38 -5.59 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.99 6.66 56.52 0.38 -5.62 16 7 C -0.44 -11.83 9.67 -37.65 -0.36 -12.19 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.13 3.34 5.16 -106.55 -0.55 2.79 16 10 C -0.30 -7.52 7.11 -38.71 -0.28 -7.79 16 11 C 0.14 3.34 11.15 -17.68 -0.20 3.15 16 12 N -0.55 -14.01 7.85 -12.52 -0.10 -14.10 16 13 C 0.36 8.43 7.41 -154.71 -1.15 7.28 16 14 N -0.66 -12.12 5.39 -11.49 -0.06 -12.18 16 15 C 0.50 9.03 6.23 -10.98 -0.07 8.96 16 16 O -0.46 -10.55 14.38 5.56 0.08 -10.47 16 17 C 0.11 1.41 3.26 -68.10 -0.22 1.19 16 18 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.12 -1.01 6.48 -24.74 -0.16 -1.17 16 20 C -0.13 -0.73 7.11 -24.43 -0.17 -0.91 16 21 C 0.10 0.73 7.20 -2.53 -0.02 0.71 16 22 N -0.61 -7.15 2.76 -169.37 -0.47 -7.61 16 23 C 0.51 6.93 11.64 54.05 0.63 7.55 16 24 O -0.54 -10.44 16.97 5.55 0.09 -10.34 16 25 C -0.29 -6.88 9.73 -38.48 -0.37 -7.26 16 26 H 0.29 6.87 8.29 -40.82 -0.34 6.53 16 27 H 0.11 2.63 4.43 -52.49 -0.23 2.40 16 28 H 0.13 2.74 8.06 -52.48 -0.42 2.32 16 29 H 0.41 5.67 8.70 -40.82 -0.36 5.32 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.81 7.85 -51.93 -0.41 0.41 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.11 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -37.12 314.10 -6.52 -43.64 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.41 Total: 5.24 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.02 Total: 4.49 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.15 Total: -54.38 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.17 Total: -20.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.15 Total: 17.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.12 -6.52 -43.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.364 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds