Wall clock time and date at job start Tue Mar 31 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86798 * 119.99659 * 2 1 4 4 H 1.48499 * 109.47396 * 272.44001 * 3 2 1 5 5 H 1.48498 * 109.47363 * 32.44182 * 3 2 1 6 6 H 1.48500 * 109.47368 * 152.44129 * 3 2 1 7 7 C 1.40032 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99770 * 347.70429 * 7 2 1 9 9 C 1.41540 * 119.99878 * 167.69933 * 7 2 1 10 10 C 1.41172 * 120.99735 * 329.44527 * 9 7 2 11 11 C 1.37588 * 119.01353 * 180.02562 * 10 9 7 12 12 N 1.32084 * 121.11173 * 0.02562 * 11 10 9 13 13 C 1.32466 * 122.23061 * 359.97438 * 12 11 10 14 14 N 1.39467 * 119.58127 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99776 * 5.52821 * 14 13 12 16 16 O 1.21278 * 120.00092 * 355.14242 * 15 14 13 17 17 C 1.50705 * 119.99594 * 175.14635 * 15 14 13 18 18 H 1.08997 * 109.87366 * 319.55177 * 17 15 14 19 19 C 1.54320 * 110.01458 * 80.66009 * 17 15 14 20 20 C 1.55445 * 102.96929 * 141.67619 * 19 17 15 21 21 C 1.54904 * 101.45538 * 324.51635 * 20 19 17 22 22 N 1.47026 * 109.87715 * 198.54401 * 17 15 14 23 23 C 1.34775 * 125.65091 * 61.46719 * 22 17 15 24 24 O 1.21284 * 120.00085 * 359.97438 * 23 22 17 25 25 C 1.38601 * 120.83836 * 0.26680 * 13 12 11 26 26 H 0.97000 * 120.00273 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.49192 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.44712 * 179.97438 * 11 10 9 29 29 H 0.97002 * 120.00089 * 185.52277 * 14 13 12 30 30 H 1.09000 * 110.71918 * 260.04222 * 19 17 15 31 31 H 1.09004 * 110.71749 * 23.13494 * 19 17 15 32 32 H 1.08997 * 111.11822 * 206.46020 * 20 19 17 33 33 H 1.08998 * 111.01103 * 82.52646 * 20 19 17 34 34 H 1.08995 * 110.37005 * 278.11400 * 21 20 19 35 35 H 1.09000 * 110.36747 * 155.89757 * 21 20 19 36 36 H 1.08004 * 120.00293 * 179.97438 * 23 22 17 37 37 H 1.08010 * 120.60221 * 179.73084 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4372 2.0763 -1.3988 5 1 1.4656 2.6372 0.7510 6 1 3.5638 1.4260 0.6477 7 6 2.0077 -1.2127 0.0005 8 1 1.4863 -2.1372 0.2001 9 6 3.3987 -1.2268 -0.2606 10 6 3.9893 -0.2638 -1.1072 11 6 5.3455 -0.3160 -1.3333 12 7 6.0953 -1.2481 -0.7734 13 6 5.5904 -2.1739 0.0282 14 7 6.4333 -3.1328 0.5895 15 6 7.7659 -3.0487 0.4061 16 8 8.2254 -2.1916 -0.3185 17 6 8.6849 -4.0198 1.1016 18 1 8.3401 -4.1909 2.1213 19 6 8.7239 -5.3554 0.3296 20 6 10.2146 -5.7810 0.4439 21 6 10.9320 -4.4097 0.3778 22 7 10.0547 -3.4861 1.1200 23 6 10.4440 -2.3417 1.7162 24 8 9.6323 -1.6562 2.3012 25 6 4.2340 -2.2054 0.3115 26 1 -0.4850 0.8400 -0.0004 27 1 3.3854 0.5020 -1.5712 28 1 5.8046 0.4171 -1.9801 29 1 6.0606 -3.8602 1.1118 30 1 8.0751 -6.0930 0.8020 31 1 8.4416 -5.2068 -0.7127 32 1 10.5071 -6.4157 -0.3925 33 1 10.4074 -6.2774 1.3950 34 1 11.0353 -4.0851 -0.6575 35 1 11.9101 -4.4699 0.8552 36 1 11.4787 -2.0352 1.6731 37 1 3.8256 -2.9647 0.9622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830367606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:19 Heat of formation + Delta-G solvation = -46.867291 kcal Electronic energy + Delta-G solvation = -22573.480517 eV Core-core repulsion = 19122.063373 eV Total energy + Delta-G solvation = -3451.417144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.81902 -40.66245 -39.35225 -38.07374 -36.23912 -35.46992 -33.25818 -32.63389 -31.45441 -29.91764 -27.95727 -25.63203 -24.34172 -23.78252 -22.44805 -22.20627 -20.64917 -19.88552 -18.72564 -18.23010 -17.89331 -17.42548 -17.03224 -16.25614 -16.20190 -16.10877 -15.74695 -15.18621 -15.05810 -14.80419 -14.70114 -14.46329 -14.15132 -13.87623 -13.45599 -13.30755 -13.03176 -12.77634 -12.73820 -12.52484 -12.12355 -11.82935 -11.76966 -11.48859 -11.23981 -11.07421 -11.06790 -10.22181 -9.91657 -9.57057 -9.02928 -8.99327 -6.76378 0.47624 0.70607 1.23578 1.36541 1.43625 1.52180 1.77541 1.99950 2.07067 2.26588 2.64417 3.39541 3.45459 3.53379 3.70545 3.98721 4.05103 4.16666 4.23308 4.40814 4.55310 4.56743 4.62525 4.69690 4.78046 4.84904 4.90789 5.07964 5.15571 5.20523 5.23088 5.34344 5.38492 5.67167 6.00803 6.15737 6.40076 6.46194 6.50127 6.66425 7.08535 7.20851 7.64230 8.06990 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.003909 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.779106 B = 7161.813121 C = 7533.035687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.057 3.943 3 Si 0.964 3.036 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.114 3.886 10 C -0.311 4.311 11 C 0.131 3.869 12 N -0.574 5.574 13 C 0.359 3.641 14 N -0.652 5.652 15 C 0.489 3.511 16 O -0.515 6.515 17 C 0.115 3.885 18 H 0.107 0.893 19 C -0.118 4.118 20 C -0.116 4.116 21 C 0.093 3.907 22 N -0.611 5.611 23 C 0.503 3.497 24 O -0.607 6.607 25 C -0.297 4.297 26 H 0.299 0.701 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.427 0.573 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.184 0.816 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.982 -12.967 2.039 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.160 4.160 3 Si 0.789 3.211 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.334 4.334 11 C -0.022 4.022 12 N -0.293 5.293 13 C 0.132 3.868 14 N -0.300 5.300 15 C 0.275 3.725 16 O -0.386 6.386 17 C 0.007 3.993 18 H 0.125 0.875 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.028 4.028 22 N -0.346 5.346 23 C 0.276 3.724 24 O -0.485 6.485 25 C -0.322 4.322 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.172 0.828 29 H 0.265 0.735 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.199 0.801 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.666 -11.871 1.743 23.896 hybrid contribution -1.620 0.726 0.293 1.800 sum 19.045 -11.146 2.036 22.161 Atomic orbital electron populations 1.69606 1.08811 1.31890 1.35594 1.26697 0.95386 1.03830 0.90106 0.85527 0.78795 0.76862 0.79929 1.17661 1.20056 1.19208 1.19462 0.91500 0.95571 1.43210 0.91024 1.17886 0.93188 0.90426 0.87909 1.22033 0.96753 1.06384 1.08258 1.22273 0.90140 0.94486 0.95342 1.67439 1.39304 1.07208 1.15373 1.18382 0.87526 0.89308 0.91605 1.43509 1.06289 1.27551 1.52640 1.21952 0.82628 0.86086 0.81834 1.90736 1.75518 1.35817 1.36534 1.21707 0.83581 0.93140 1.00879 0.87487 1.22753 1.00779 0.92022 1.00062 1.22870 0.91534 0.95596 1.05402 1.22678 0.94987 0.88491 0.96617 1.49079 1.08113 1.23901 1.53526 1.23280 0.95435 0.77750 0.75923 1.90744 1.58352 1.53732 1.45667 1.21429 0.91401 1.08090 1.11307 0.89041 0.86790 0.82849 0.73472 0.86214 0.91496 0.87119 0.88142 0.91652 0.86506 0.80068 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.38 13.92 21.84 0.30 -44.07 16 2 C 0.06 3.03 5.48 85.29 0.47 3.50 16 3 Si 0.96 43.62 24.42 68.60 1.68 45.30 16 4 H -0.25 -10.64 6.67 99.48 0.66 -9.97 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -13.04 6.66 99.48 0.66 -12.38 16 7 C -0.47 -25.78 9.67 23.52 0.23 -25.55 16 8 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 9 C 0.11 6.00 5.16 -21.12 -0.11 5.89 16 10 C -0.31 -15.60 7.11 22.84 0.16 -15.44 16 11 C 0.13 6.38 11.15 84.50 0.94 7.32 16 12 N -0.57 -29.18 7.85 -193.53 -1.52 -30.70 16 13 C 0.36 16.74 7.41 132.76 0.98 17.72 16 14 N -0.65 -23.62 5.39 -308.66 -1.66 -25.28 16 15 C 0.49 17.56 6.23 87.66 0.55 18.11 16 16 O -0.51 -23.55 14.38 -3.02 -0.04 -23.59 16 17 C 0.12 2.63 3.26 44.59 0.15 2.78 16 18 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 19 C -0.12 -1.57 6.48 31.88 0.21 -1.36 16 20 C -0.12 -0.78 7.11 32.09 0.23 -0.55 16 21 C 0.09 1.00 7.20 86.85 0.63 1.62 16 22 N -0.61 -12.93 2.76 -808.15 -2.23 -15.16 16 23 C 0.50 12.94 11.64 129.79 1.51 14.45 16 24 O -0.61 -23.75 16.97 -3.04 -0.05 -23.80 16 25 C -0.30 -14.17 9.73 22.99 0.22 -13.94 16 26 H 0.30 14.24 8.29 -92.71 -0.77 13.47 16 27 H 0.11 5.49 4.43 -2.91 -0.01 5.48 16 28 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 29 H 0.43 11.41 8.70 -92.71 -0.81 10.61 16 30 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.15 7.85 -2.39 -0.02 1.14 16 32 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.13 5.48 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -84.43 314.10 2.85 -81.58 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.21 Total: 21.18 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 6.16 Total: 14.55 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -5.11 Total: -115.22 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.10 Total: -47.39 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.68 Total: 45.30 kcal Total: -84.43 2.85 -81.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.718 kcal (2) G-P(sol) polarization free energy of solvation -84.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds