Wall clock time and date at job start Tue Mar 31 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99550 * 2 1 4 4 H 1.48505 * 109.46795 * 85.00497 * 3 2 1 5 5 H 1.48503 * 109.47019 * 205.00419 * 3 2 1 6 6 H 1.48492 * 109.47470 * 325.00317 * 3 2 1 7 7 C 1.40023 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99889 * 143.38335 * 7 2 1 9 9 C 1.41546 * 120.00347 * 323.39067 * 7 2 1 10 10 C 1.41176 * 120.99224 * 353.40755 * 9 7 2 11 11 C 1.37589 * 119.01113 * 179.77477 * 10 9 7 12 12 N 1.32071 * 121.11200 * 0.51745 * 11 10 9 13 13 C 1.32467 * 122.23370 * 359.73203 * 12 11 10 14 14 N 1.39471 * 119.58352 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99898 * 354.55755 * 14 13 12 16 16 O 1.21274 * 120.00023 * 4.66470 * 15 14 13 17 17 C 1.50706 * 120.00081 * 184.66369 * 15 14 13 18 18 H 1.08993 * 109.87263 * 40.43471 * 17 15 14 19 19 C 1.54325 * 109.88186 * 279.26245 * 17 15 14 20 20 C 1.55153 * 102.94345 * 218.38853 * 19 17 15 21 21 C 1.54911 * 101.58171 * 35.50281 * 20 19 17 22 22 N 1.47017 * 109.88051 * 161.45571 * 17 15 14 23 23 C 1.34773 * 125.64934 * 298.31576 * 22 17 15 24 24 O 1.21284 * 119.99840 * 0.02562 * 23 22 17 25 25 C 1.38603 * 120.83675 * 0.02562 * 13 12 11 26 26 H 0.96993 * 120.00378 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.49347 * 0.02562 * 10 9 7 28 28 H 1.08008 * 119.44187 * 180.23006 * 11 10 9 29 29 H 0.97008 * 120.00090 * 174.55145 * 14 13 12 30 30 H 1.09002 * 110.71901 * 336.74973 * 19 17 15 31 31 H 1.09001 * 110.72107 * 100.02235 * 19 17 15 32 32 H 1.08993 * 111.00516 * 277.42864 * 20 19 17 33 33 H 1.08999 * 111.00634 * 153.57505 * 20 19 17 34 34 H 1.09002 * 110.36832 * 204.15447 * 21 20 19 35 35 H 1.09004 * 110.37046 * 81.82723 * 21 20 19 36 36 H 1.08000 * 120.00375 * 180.02562 * 23 22 17 37 37 H 1.08003 * 120.59864 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3832 2.1074 1.3948 5 1 3.5877 1.4122 -0.5918 6 1 1.4956 2.6199 -0.8029 7 6 2.0076 -1.2126 0.0005 8 1 2.9278 -1.3051 -0.5573 9 6 1.5095 -2.3172 0.7320 10 6 0.3869 -2.1827 1.5774 11 6 -0.0659 -3.2845 2.2660 12 7 0.5375 -4.4540 2.1549 13 6 1.5968 -4.6317 1.3795 14 7 2.1912 -5.8911 1.3039 15 6 1.7575 -6.8898 2.0983 16 8 0.7963 -6.7185 2.8176 17 6 2.4671 -8.2193 2.0926 18 1 3.5448 -8.0640 2.0443 19 6 1.9998 -9.0585 0.8847 20 6 1.9302 -10.4954 1.4657 21 6 1.4476 -10.2228 2.9123 22 7 2.1245 -8.9740 3.3070 23 6 2.3867 -8.5885 4.5715 24 8 2.9520 -7.5358 4.7796 25 6 2.1225 -3.5817 0.6433 26 1 -0.4850 0.8400 0.0004 27 1 -0.1116 -1.2300 1.6790 28 1 -0.9265 -3.1902 2.9118 29 1 2.9168 -6.0483 0.6795 30 1 1.0169 -8.7317 0.5452 31 1 2.7264 -9.0051 0.0739 32 1 2.9135 -10.9656 1.4640 33 1 1.2076 -11.1027 0.9207 34 1 1.7435 -11.0393 3.5711 35 1 0.3658 -10.0907 2.9328 36 1 2.0934 -9.2168 5.3995 37 1 2.9866 -3.7308 0.0127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830367607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:21 Heat of formation + Delta-G solvation = -48.726157 kcal Electronic energy + Delta-G solvation = -22449.376075 eV Core-core repulsion = 18997.878324 eV Total energy + Delta-G solvation = -3451.497750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74544 -40.47992 -39.23207 -38.05886 -36.33530 -35.37623 -32.70948 -32.63433 -31.28024 -29.67393 -27.98214 -25.60367 -24.15998 -23.65797 -22.43506 -22.17966 -20.62074 -19.75579 -18.69982 -18.18065 -17.69612 -17.19403 -16.77323 -16.22690 -16.07809 -16.07087 -15.61336 -15.18663 -15.03211 -14.62446 -14.38741 -14.33453 -13.98886 -13.86550 -13.32113 -13.28686 -13.09098 -12.73973 -12.66139 -12.13229 -12.02409 -11.98279 -11.77204 -11.48600 -11.06515 -11.03518 -10.98911 -10.16315 -9.84759 -9.49700 -8.94065 -8.85208 -6.57481 0.74574 0.95139 1.36026 1.50433 1.54511 1.59172 1.86678 2.05635 2.13309 2.32846 2.63379 3.43726 3.53324 3.72169 3.74553 4.00168 4.12175 4.19558 4.24378 4.56025 4.73431 4.77945 4.83265 4.85436 4.90463 4.91169 4.96883 5.08045 5.19290 5.22671 5.34353 5.47025 5.60152 5.86519 6.08580 6.36550 6.48370 6.60870 6.73450 6.78100 7.09963 7.31370 7.86720 8.03653 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.003492 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.911660 B = 8017.055943 C = 8164.082877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.051 3.949 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.251 1.251 6 H -0.259 1.259 7 C -0.479 4.479 8 H 0.091 0.909 9 C 0.112 3.888 10 C -0.275 4.275 11 C 0.101 3.899 12 N -0.594 5.594 13 C 0.353 3.647 14 N -0.652 5.652 15 C 0.487 3.513 16 O -0.520 6.520 17 C 0.116 3.884 18 H 0.107 0.893 19 C -0.118 4.118 20 C -0.116 4.116 21 C 0.093 3.907 22 N -0.611 5.611 23 C 0.503 3.497 24 O -0.607 6.607 25 C -0.333 4.333 26 H 0.300 0.700 27 H 0.118 0.882 28 H 0.133 0.867 29 H 0.424 0.576 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.185 0.815 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -18.553 -0.922 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.172 4.172 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.174 1.174 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.109 0.891 9 C 0.104 3.896 10 C -0.299 4.299 11 C -0.049 4.049 12 N -0.315 5.315 13 C 0.125 3.875 14 N -0.300 5.300 15 C 0.273 3.727 16 O -0.392 6.392 17 C 0.008 3.992 18 H 0.125 0.875 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.028 4.028 22 N -0.346 5.346 23 C 0.276 3.724 24 O -0.485 6.485 25 C -0.359 4.359 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.200 0.800 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.337 -18.567 0.316 19.069 hybrid contribution 0.472 1.872 -0.577 2.015 sum 4.809 -16.695 -0.260 17.375 Atomic orbital electron populations 1.69905 1.09975 1.32202 1.27738 1.27030 0.95032 1.05277 0.89891 0.85179 0.79843 0.75115 0.79615 1.18966 1.17380 1.18334 1.19896 1.08238 0.95407 1.27186 0.89144 1.17887 0.89955 0.91870 0.89905 1.22162 1.03355 0.99520 1.04852 1.22087 0.97620 0.88299 0.96938 1.67309 1.12693 1.26038 1.25460 1.18327 0.90992 0.85312 0.92852 1.43461 1.37415 1.08030 1.41060 1.21959 0.84704 0.86755 0.79287 1.90730 1.27353 1.81851 1.39260 1.21703 0.99921 0.88413 0.89200 0.87484 1.22705 1.02934 0.95261 0.94727 1.22824 1.04420 0.94721 0.93376 1.22691 0.96992 0.84856 0.98242 1.49074 1.58407 1.22280 1.04846 1.23288 0.76988 0.87215 0.84947 1.90741 1.44609 1.27991 1.85207 1.21183 1.08724 0.93062 1.12946 0.88884 0.86398 0.84918 0.73827 0.91798 0.86144 0.87970 0.87142 0.86322 0.91829 0.79983 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.86 11.19 21.84 0.24 -38.62 16 2 C 0.05 2.47 4.93 85.29 0.42 2.90 16 3 Si 0.98 36.08 29.68 68.60 2.04 38.12 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.48 -25.37 9.01 23.52 0.21 -25.16 16 8 H 0.09 4.54 8.04 -2.91 -0.02 4.52 16 9 C 0.11 6.26 5.72 -21.12 -0.12 6.14 16 10 C -0.28 -15.57 9.01 22.84 0.21 -15.36 16 11 C 0.10 5.60 11.15 84.50 0.94 6.55 16 12 N -0.59 -33.76 7.85 -193.53 -1.52 -35.28 16 13 C 0.35 18.20 7.42 132.75 0.98 19.19 16 14 N -0.65 -26.24 5.39 -308.66 -1.66 -27.91 16 15 C 0.49 19.28 6.23 87.66 0.55 19.82 16 16 O -0.52 -26.04 14.39 -3.01 -0.04 -26.09 16 17 C 0.12 2.96 3.26 44.60 0.15 3.10 16 18 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 19 C -0.12 -1.86 6.47 31.78 0.21 -1.65 16 20 C -0.12 -0.99 7.09 31.99 0.23 -0.76 16 21 C 0.09 1.18 7.21 86.85 0.63 1.81 16 22 N -0.61 -14.30 2.75 -808.15 -2.22 -16.53 16 23 C 0.50 13.96 11.65 129.79 1.51 15.47 16 24 O -0.61 -25.06 16.98 -3.04 -0.05 -25.11 16 25 C -0.33 -17.23 9.73 22.98 0.22 -17.01 16 26 H 0.30 13.17 8.29 -92.71 -0.77 12.40 16 27 H 0.12 6.67 5.84 -2.91 -0.02 6.65 16 28 H 0.13 6.71 8.06 -2.91 -0.02 6.69 16 29 H 0.42 12.88 8.70 -92.70 -0.81 12.08 16 30 H 0.06 1.29 7.84 -2.39 -0.02 1.28 16 31 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.12 5.48 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -86.65 320.18 3.21 -83.44 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.30 Total: 32.95 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.13 Total: 15.02 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -5.16 Total: -118.33 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.10 Total: -51.20 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.04 Total: 38.12 kcal Total: -86.65 3.21 -83.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.713 kcal (2) G-P(sol) polarization free energy of solvation -86.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds