Wall clock time and date at job start Tue Mar 31 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99392 * 2 1 4 4 H 1.48502 * 109.47011 * 239.99726 * 3 2 1 5 5 H 1.48490 * 109.47544 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47123 * 120.00302 * 3 2 1 7 7 C 1.40026 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99868 * 198.87089 * 7 2 1 9 9 C 1.41547 * 120.00198 * 18.86382 * 7 2 1 10 10 C 1.41170 * 120.98973 * 27.60564 * 9 7 2 11 11 C 1.37587 * 119.01154 * 180.22810 * 10 9 7 12 12 N 1.32086 * 121.11028 * 359.47963 * 11 10 9 13 13 C 1.32476 * 122.22934 * 0.54163 * 12 11 10 14 14 N 1.39472 * 119.57897 * 179.70491 * 13 12 11 15 15 C 1.34769 * 119.99896 * 5.79143 * 14 13 12 16 16 O 1.21281 * 120.00769 * 4.99414 * 15 14 13 17 17 C 1.50708 * 120.00013 * 184.99736 * 15 14 13 18 18 C 1.52993 * 109.47269 * 179.97438 * 17 15 14 19 19 H 1.09003 * 110.21666 * 306.92487 * 18 17 15 20 20 C 1.54486 * 110.24541 * 185.00284 * 18 17 15 21 21 C 1.54622 * 101.76133 * 215.58523 * 20 18 17 22 22 C 1.51281 * 104.20190 * 24.79261 * 21 20 18 23 23 O 1.21281 * 124.94255 * 163.74628 * 22 21 20 24 24 N 1.34417 * 110.11240 * 343.75124 * 22 21 20 25 25 C 1.38596 * 120.83508 * 359.72428 * 13 12 11 26 26 H 0.96994 * 120.00441 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.50109 * 359.95708 * 10 9 7 28 28 H 1.08006 * 119.44941 * 179.72791 * 11 10 9 29 29 H 0.96997 * 119.99820 * 185.78794 * 14 13 12 30 30 H 1.08998 * 109.46936 * 300.00116 * 17 15 14 31 31 H 1.09000 * 109.46963 * 59.99583 * 17 15 14 32 32 H 1.09000 * 110.96580 * 333.69703 * 20 18 17 33 33 H 1.08992 * 110.97020 * 97.46309 * 20 18 17 34 34 H 1.09007 * 110.48782 * 143.47663 * 21 20 18 35 35 H 1.09002 * 110.48687 * 266.11334 * 21 20 18 36 36 H 0.96997 * 124.34627 * 179.56940 * 24 22 21 37 37 H 1.08006 * 120.59629 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0442 -1.2375 0.3031 9 6 1.3570 -2.4058 -0.3953 10 6 0.2761 -2.3776 -1.3028 11 6 -0.3296 -3.5614 -1.6560 12 7 0.0904 -4.7150 -1.1687 13 6 1.0998 -4.7955 -0.3145 14 7 1.4937 -6.0426 0.1702 15 6 0.9282 -7.1644 -0.3176 16 8 0.1436 -7.0965 -1.2400 17 6 1.2705 -8.5035 0.2831 18 6 0.4978 -9.6030 -0.4480 19 1 -0.5670 -9.3703 -0.4608 20 6 0.7382 -10.9687 0.2330 21 6 0.7479 -11.9282 -0.9795 22 6 1.1476 -11.0499 -2.1446 23 8 1.5413 -11.4559 -3.2175 24 7 1.0029 -9.7542 -1.8176 25 6 1.7689 -3.6562 0.1041 26 1 -0.4850 0.8400 -0.0004 27 1 -0.0731 -1.4405 -1.7105 28 1 -1.1601 -3.5476 -2.3464 29 1 2.1748 -6.1024 0.8582 30 1 2.3409 -8.6834 0.1834 31 1 0.9981 -8.5086 1.3385 32 1 1.6979 -10.9833 0.7496 33 1 -0.0749 -11.2122 0.9167 34 1 1.4798 -12.7224 -0.8317 35 1 -0.2447 -12.3483 -1.1414 36 1 1.2066 -9.0141 -2.4106 37 1 2.5915 -3.7264 0.8004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830367755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:08 Heat of formation + Delta-G solvation = -42.370560 kcal Electronic energy + Delta-G solvation = -21847.872802 eV Core-core repulsion = 18396.650651 eV Total energy + Delta-G solvation = -3451.222151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62473 -39.51531 -37.93420 -36.53772 -34.53785 -33.64960 -31.40012 -31.26390 -30.75051 -28.57276 -26.06672 -25.50373 -22.28269 -21.84417 -21.25017 -20.60284 -19.67338 -17.98631 -17.38769 -16.85227 -16.47194 -15.94021 -15.27329 -15.11690 -14.73197 -14.32667 -14.14077 -13.89230 -13.78969 -13.52972 -13.08813 -12.86515 -12.80092 -12.56597 -12.46004 -11.79762 -11.65517 -11.46133 -11.29849 -11.29313 -11.01931 -10.45337 -10.14492 -9.93828 -9.80665 -9.53208 -9.35941 -9.15532 -8.09400 -7.81331 -7.10919 -6.91822 -4.66575 2.44651 2.54765 2.72127 2.98744 3.00517 3.10367 3.32543 3.39241 3.40622 3.81614 4.15820 4.21429 4.46380 4.59981 4.74583 4.90231 5.05197 5.13802 5.30256 5.39838 5.48959 5.58467 5.61060 5.85570 5.92668 6.48995 6.50646 6.70064 6.77236 6.84408 7.04102 7.04902 7.31683 7.38769 7.68779 7.80111 8.10179 8.22161 8.37483 8.57863 8.68277 8.74222 9.60065 10.02117 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.044631 B = 0.002872 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.218805 B = 9747.802710 C = 9892.072574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.082 0.918 9 C 0.150 3.850 10 C -0.222 4.222 11 C 0.105 3.895 12 N -0.554 5.554 13 C 0.347 3.653 14 N -0.660 5.660 15 C 0.495 3.505 16 O -0.479 6.479 17 C -0.153 4.153 18 C 0.147 3.853 19 H 0.093 0.907 20 C -0.129 4.129 21 C -0.156 4.156 22 C 0.515 3.485 23 O -0.544 6.544 24 N -0.715 5.715 25 C -0.303 4.303 26 H 0.285 0.715 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.407 0.593 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.416 0.584 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -13.848 5.686 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.142 3.858 10 C -0.246 4.246 11 C -0.046 4.046 12 N -0.273 5.273 13 C 0.120 3.880 14 N -0.306 5.306 15 C 0.279 3.721 16 O -0.350 6.350 17 C -0.194 4.194 18 C 0.041 3.959 19 H 0.111 0.889 20 C -0.167 4.167 21 C -0.196 4.196 22 C 0.301 3.699 23 O -0.421 6.421 24 N -0.371 5.371 25 C -0.329 4.329 26 H 0.096 0.904 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.241 0.759 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.256 0.744 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.027 -14.788 4.267 15.425 hybrid contribution 1.173 2.103 0.616 2.486 sum 2.201 -12.684 4.883 13.769 Atomic orbital electron populations 1.69773 1.07758 1.29890 1.33387 1.25936 0.94709 1.01456 0.91823 0.86329 0.80192 0.79898 0.80136 1.18645 1.20196 1.18867 1.19499 0.98642 0.90981 1.40191 0.90018 1.17546 0.89613 0.91492 0.87176 1.22071 1.01972 0.97958 1.02549 1.21866 0.97603 0.87703 0.97418 1.67191 1.15812 1.28671 1.15645 1.18024 0.92919 0.83200 0.93879 1.43482 1.41335 1.04610 1.41199 1.20620 0.81883 0.85330 0.84227 1.90809 1.31899 1.86124 1.26145 1.22132 1.02764 0.92604 1.01921 1.21438 0.99171 0.94012 0.81323 0.88898 1.22722 1.03998 0.92821 0.97189 1.22346 1.04577 0.98836 0.93864 1.20882 0.76542 0.83911 0.88567 1.90748 1.47523 1.77785 1.26084 1.46378 1.66204 1.08291 1.16235 1.21222 1.08167 0.92342 1.11134 0.90435 0.86302 0.85872 0.75879 0.88364 0.87356 0.89658 0.88865 0.88141 0.87810 0.74354 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.42 11.30 55.55 0.63 -18.79 16 2 C 0.08 1.94 5.12 -17.35 -0.09 1.85 16 3 Si 0.91 17.70 29.60 -169.99 -5.03 12.67 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 7 C -0.46 -11.65 9.09 -37.65 -0.34 -11.99 16 8 H 0.08 1.96 7.92 -52.48 -0.42 1.54 16 9 C 0.15 3.85 5.55 -106.56 -0.59 3.26 16 10 C -0.22 -5.66 8.77 -38.71 -0.34 -6.00 16 11 C 0.11 2.56 11.15 -17.68 -0.20 2.36 16 12 N -0.55 -13.59 7.89 -12.52 -0.10 -13.69 16 13 C 0.35 7.76 7.40 -154.70 -1.15 6.61 16 14 N -0.66 -10.98 5.39 -11.49 -0.06 -11.04 16 15 C 0.49 7.68 7.61 -10.99 -0.08 7.59 16 16 O -0.48 -9.54 13.33 5.56 0.07 -9.47 16 17 C -0.15 -1.40 5.30 -27.88 -0.15 -1.55 16 18 C 0.15 1.38 3.00 -67.01 -0.20 1.18 16 19 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 20 C -0.13 -0.77 6.69 -25.10 -0.17 -0.94 16 21 C -0.16 -1.21 6.86 -26.75 -0.18 -1.40 16 22 C 0.52 6.59 8.43 -10.86 -0.09 6.49 16 23 O -0.54 -9.39 18.03 5.56 0.10 -9.29 16 24 N -0.72 -8.77 5.62 -52.77 -0.30 -9.07 16 25 C -0.30 -7.03 9.73 -38.48 -0.37 -7.41 16 26 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 27 H 0.12 3.06 6.56 -52.49 -0.34 2.71 16 28 H 0.12 2.70 8.06 -52.48 -0.42 2.28 16 29 H 0.41 5.07 8.70 -40.82 -0.36 4.71 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.39 7.91 -51.93 -0.41 -0.02 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.42 5.93 8.12 -40.82 -0.33 5.60 16 37 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -33.57 319.42 -8.19 -41.76 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.36 Total: 12.02 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.95 Total: 0.07 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.17 Total: -52.58 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.57 -8.19 -41.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.614 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds