Wall clock time and date at job start Tue Mar 31 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99392 * 2 1 4 4 H 1.48502 * 109.47011 * 239.99726 * 3 2 1 5 5 H 1.48490 * 109.47544 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47123 * 120.00302 * 3 2 1 7 7 C 1.40026 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99868 * 198.87089 * 7 2 1 9 9 C 1.41547 * 120.00198 * 18.86382 * 7 2 1 10 10 C 1.41170 * 120.98973 * 27.60564 * 9 7 2 11 11 C 1.37587 * 119.01154 * 180.22810 * 10 9 7 12 12 N 1.32086 * 121.11028 * 359.47963 * 11 10 9 13 13 C 1.32476 * 122.22934 * 0.54163 * 12 11 10 14 14 N 1.39472 * 119.57897 * 179.70491 * 13 12 11 15 15 C 1.34769 * 119.99896 * 5.79143 * 14 13 12 16 16 O 1.21281 * 120.00769 * 4.99414 * 15 14 13 17 17 C 1.50708 * 120.00013 * 184.99736 * 15 14 13 18 18 C 1.52993 * 109.47269 * 179.97438 * 17 15 14 19 19 H 1.09003 * 110.21666 * 306.92487 * 18 17 15 20 20 C 1.54486 * 110.24541 * 185.00284 * 18 17 15 21 21 C 1.54622 * 101.76133 * 215.58523 * 20 18 17 22 22 C 1.51281 * 104.20190 * 24.79261 * 21 20 18 23 23 O 1.21281 * 124.94255 * 163.74628 * 22 21 20 24 24 N 1.34417 * 110.11240 * 343.75124 * 22 21 20 25 25 C 1.38596 * 120.83508 * 359.72428 * 13 12 11 26 26 H 0.96994 * 120.00441 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.50109 * 359.95708 * 10 9 7 28 28 H 1.08006 * 119.44941 * 179.72791 * 11 10 9 29 29 H 0.96997 * 119.99820 * 185.78794 * 14 13 12 30 30 H 1.08998 * 109.46936 * 300.00116 * 17 15 14 31 31 H 1.09000 * 109.46963 * 59.99583 * 17 15 14 32 32 H 1.09000 * 110.96580 * 333.69703 * 20 18 17 33 33 H 1.08992 * 110.97020 * 97.46309 * 20 18 17 34 34 H 1.09007 * 110.48782 * 143.47663 * 21 20 18 35 35 H 1.09002 * 110.48687 * 266.11334 * 21 20 18 36 36 H 0.96997 * 124.34627 * 179.56940 * 24 22 21 37 37 H 1.08006 * 120.59629 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0442 -1.2375 0.3031 9 6 1.3570 -2.4058 -0.3953 10 6 0.2761 -2.3776 -1.3028 11 6 -0.3296 -3.5614 -1.6560 12 7 0.0904 -4.7150 -1.1687 13 6 1.0998 -4.7955 -0.3145 14 7 1.4937 -6.0426 0.1702 15 6 0.9282 -7.1644 -0.3176 16 8 0.1436 -7.0965 -1.2400 17 6 1.2705 -8.5035 0.2831 18 6 0.4978 -9.6030 -0.4480 19 1 -0.5670 -9.3703 -0.4608 20 6 0.7382 -10.9687 0.2330 21 6 0.7479 -11.9282 -0.9795 22 6 1.1476 -11.0499 -2.1446 23 8 1.5413 -11.4559 -3.2175 24 7 1.0029 -9.7542 -1.8176 25 6 1.7689 -3.6562 0.1041 26 1 -0.4850 0.8400 -0.0004 27 1 -0.0731 -1.4405 -1.7105 28 1 -1.1601 -3.5476 -2.3464 29 1 2.1748 -6.1024 0.8582 30 1 2.3409 -8.6834 0.1834 31 1 0.9981 -8.5086 1.3385 32 1 1.6979 -10.9833 0.7496 33 1 -0.0749 -11.2122 0.9167 34 1 1.4798 -12.7224 -0.8317 35 1 -0.2447 -12.3483 -1.1414 36 1 1.2066 -9.0141 -2.4106 37 1 2.5915 -3.7264 0.8004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830367755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:07 Heat of formation + Delta-G solvation = -66.896812 kcal Electronic energy + Delta-G solvation = -21848.936340 eV Core-core repulsion = 18396.650651 eV Total energy + Delta-G solvation = -3452.285689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63681 -40.87815 -39.52438 -37.58428 -36.20832 -35.29752 -32.64058 -32.25166 -32.09109 -30.19146 -27.92218 -26.42953 -23.74293 -23.54536 -22.19772 -21.52828 -21.01592 -19.68041 -18.30327 -18.09220 -17.64267 -17.42197 -16.83647 -16.29423 -16.10544 -15.85459 -15.76349 -15.23529 -14.83364 -14.65998 -14.36597 -14.25860 -14.12280 -13.65069 -13.37916 -13.22939 -12.98544 -12.76791 -12.64575 -12.29907 -12.09220 -11.92482 -11.87204 -11.42956 -11.16079 -10.92981 -10.89812 -10.10664 -9.99068 -9.61542 -8.86218 -8.71210 -6.58002 0.74305 0.95933 1.39604 1.51037 1.54951 1.59531 1.92989 2.14214 2.20947 2.45741 2.78519 3.39227 3.54872 3.71941 3.75143 3.88551 4.17651 4.27286 4.44926 4.47743 4.65445 4.74536 4.84552 4.88881 4.91432 4.92623 5.02115 5.15900 5.20096 5.29484 5.44062 5.62394 5.82759 5.91026 6.10899 6.13736 6.44030 6.63217 6.78299 6.80097 7.22441 7.34374 7.82953 8.24448 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.044631 B = 0.002872 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.218805 B = 9747.802710 C = 9892.072574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.041 3.959 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.491 4.491 8 H 0.088 0.912 9 C 0.122 3.878 10 C -0.245 4.245 11 C 0.098 3.902 12 N -0.575 5.575 13 C 0.348 3.652 14 N -0.652 5.652 15 C 0.488 3.512 16 O -0.528 6.528 17 C -0.135 4.135 18 C 0.138 3.862 19 H 0.078 0.922 20 C -0.111 4.111 21 C -0.147 4.147 22 C 0.501 3.499 23 O -0.602 6.602 24 N -0.722 5.722 25 C -0.314 4.314 26 H 0.293 0.707 27 H 0.106 0.894 28 H 0.137 0.863 29 H 0.427 0.573 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.400 0.600 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -15.001 8.252 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.177 4.177 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.521 4.521 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.268 4.268 11 C -0.053 4.053 12 N -0.295 5.295 13 C 0.119 3.881 14 N -0.300 5.300 15 C 0.276 3.724 16 O -0.401 6.401 17 C -0.175 4.175 18 C 0.033 3.967 19 H 0.096 0.904 20 C -0.148 4.148 21 C -0.187 4.187 22 C 0.290 3.710 23 O -0.484 6.484 24 N -0.374 5.374 25 C -0.340 4.340 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.155 0.845 29 H 0.266 0.734 30 H 0.142 0.858 31 H 0.169 0.831 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.238 0.762 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.113 -15.979 6.911 17.537 hybrid contribution 0.792 2.411 -0.194 2.545 sum 2.905 -13.568 6.718 15.416 Atomic orbital electron populations 1.69827 1.09316 1.31306 1.33522 1.26834 0.95409 1.04733 0.90700 0.85197 0.78780 0.75191 0.80269 1.18571 1.19289 1.17816 1.19820 0.99127 0.91880 1.41275 0.89430 1.17956 0.90072 0.92982 0.87620 1.22013 1.03179 0.97755 1.03863 1.22127 0.97896 0.87687 0.97555 1.67324 1.17019 1.28431 1.16723 1.18355 0.91719 0.85424 0.92593 1.43536 1.41867 1.03061 1.41512 1.21848 0.80397 0.86844 0.83304 1.90797 1.33979 1.86966 1.28363 1.22183 1.04236 0.87669 1.03391 1.21693 0.98337 0.96426 0.80216 0.90361 1.22785 1.06605 0.89015 0.96393 1.22400 1.05544 0.98639 0.92084 1.21854 0.75398 0.84649 0.89113 1.90705 1.50183 1.78739 1.28770 1.46661 1.65528 1.07858 1.17372 1.21441 1.08922 0.91998 1.11628 0.89663 0.87602 0.84523 0.73414 0.85755 0.83120 0.87177 0.85841 0.86412 0.86525 0.76250 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.07 11.30 21.84 0.25 -40.82 16 2 C 0.04 1.96 5.12 85.29 0.44 2.40 16 3 Si 0.99 35.94 29.60 68.60 2.03 37.97 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.49 -25.06 9.09 23.52 0.21 -24.84 16 8 H 0.09 4.21 7.92 -2.91 -0.02 4.18 16 9 C 0.12 6.41 5.55 -21.12 -0.12 6.29 16 10 C -0.24 -12.94 8.77 22.84 0.20 -12.74 16 11 C 0.10 4.97 11.15 84.50 0.94 5.91 16 12 N -0.57 -28.74 7.89 -193.52 -1.53 -30.27 16 13 C 0.35 15.52 7.40 132.75 0.98 16.51 16 14 N -0.65 -20.61 5.39 -308.65 -1.66 -22.27 16 15 C 0.49 14.35 7.61 87.66 0.67 15.02 16 16 O -0.53 -21.08 13.33 -3.03 -0.04 -21.12 16 17 C -0.13 -1.94 5.30 29.85 0.16 -1.78 16 18 C 0.14 2.21 3.00 45.45 0.14 2.35 16 19 H 0.08 1.51 7.91 -2.39 -0.02 1.49 16 20 C -0.11 -0.77 6.69 31.65 0.21 -0.55 16 21 C -0.15 -1.82 6.86 30.58 0.21 -1.61 16 22 C 0.50 12.52 8.43 87.90 0.74 13.26 16 23 O -0.60 -21.38 18.03 -3.03 -0.05 -21.44 16 24 N -0.72 -17.25 5.62 -439.45 -2.47 -19.72 16 25 C -0.31 -14.65 9.73 22.98 0.22 -14.42 16 26 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 27 H 0.11 5.74 6.56 -2.91 -0.02 5.72 16 28 H 0.14 6.24 8.06 -2.91 -0.02 6.22 16 29 H 0.43 9.46 8.70 -92.71 -0.81 8.66 16 30 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 0.31 7.91 -2.39 -0.02 0.29 16 33 H 0.12 0.23 8.14 -2.39 -0.02 0.22 16 34 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.40 11.76 8.12 -92.71 -0.75 11.00 16 37 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -78.60 319.42 1.10 -77.51 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.43 Total: 34.38 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.01 Total: 5.78 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -5.41 Total: -113.08 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.10 Total: -42.56 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -78.60 1.10 -77.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.609 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds