Wall clock time and date at job start Tue Mar 31 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86808 * 119.99759 * 2 1 4 4 H 1.48503 * 109.47049 * 240.00131 * 3 2 1 5 5 H 1.48497 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46931 * 120.00099 * 3 2 1 7 7 C 1.40028 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99966 * 196.81196 * 7 2 1 9 9 C 1.41535 * 119.99861 * 16.82207 * 7 2 1 10 10 C 1.41179 * 120.99558 * 203.64957 * 9 7 2 11 11 C 1.37590 * 119.01827 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.10720 * 0.02562 * 11 10 9 13 13 C 1.32474 * 122.23517 * 359.97438 * 12 11 10 14 14 N 1.39469 * 119.58172 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99750 * 5.17487 * 14 13 12 16 16 O 1.21273 * 120.00264 * 355.12829 * 15 14 13 17 17 C 1.50700 * 119.99740 * 175.13842 * 15 14 13 18 18 C 1.52999 * 109.47312 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.21334 * 54.29615 * 18 17 15 20 20 C 1.54480 * 110.24710 * 176.22573 * 18 17 15 21 21 C 1.54634 * 101.76316 * 93.58480 * 20 18 17 22 22 C 1.51284 * 104.19546 * 24.79521 * 21 20 18 23 23 O 1.21281 * 124.93868 * 163.74913 * 22 21 20 24 24 N 1.34622 * 110.14835 * 343.76954 * 22 21 20 25 25 C 1.38593 * 120.83811 * 0.27865 * 13 12 11 26 26 H 0.96998 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.48990 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.44518 * 180.02562 * 11 10 9 29 29 H 0.96997 * 119.99550 * 185.16833 * 14 13 12 30 30 H 1.09009 * 109.46994 * 299.99593 * 17 15 14 31 31 H 1.09000 * 109.47398 * 59.99106 * 17 15 14 32 32 H 1.09001 * 110.96730 * 211.70146 * 20 18 17 33 33 H 1.08992 * 110.96797 * 335.46698 * 20 18 17 34 34 H 1.08995 * 110.48655 * 143.47835 * 21 20 18 35 35 H 1.08996 * 110.48197 * 266.11922 * 21 20 18 36 36 H 0.97004 * 124.46715 * 179.53620 * 24 22 21 37 37 H 1.07998 * 120.60579 * 179.72380 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0530 -1.2325 0.2711 9 6 1.3454 -2.4123 -0.3537 10 6 1.8230 -3.6647 0.0898 11 6 1.1478 -4.8053 -0.2793 12 7 0.0679 -4.7439 -1.0372 13 6 -0.4207 -3.5947 -1.4792 14 7 -1.5653 -3.5942 -2.2762 15 6 -2.2268 -4.7458 -2.5061 16 8 -1.7790 -5.7949 -2.0944 17 6 -3.5228 -4.7296 -3.2750 18 6 -4.0624 -6.1563 -3.3950 19 1 -4.1450 -6.6119 -2.4083 20 6 -5.4380 -6.1502 -4.0980 21 6 -5.0394 -6.3891 -5.5728 22 6 -3.7078 -7.1019 -5.4865 23 8 -3.1867 -7.7126 -6.3955 24 7 -3.1852 -6.9604 -4.2540 25 6 0.1940 -2.3931 -1.1641 26 1 -0.4850 0.8400 -0.0004 27 1 2.7059 -3.7265 0.7089 28 1 1.5070 -5.7669 0.0564 29 1 -1.8853 -2.7651 -2.6648 30 1 -4.2491 -4.1091 -2.7499 31 1 -3.3494 -4.3221 -4.2709 32 1 -6.0685 -6.9589 -3.7284 33 1 -5.9326 -5.1863 -3.9788 34 1 -5.7774 -7.0182 -6.0703 35 1 -4.9306 -5.4397 -6.0971 36 1 -2.3392 -7.3403 -3.9695 37 1 -0.2051 -1.4587 -1.5301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830367756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:11 Heat of formation + Delta-G solvation = -41.585801 kcal Electronic energy + Delta-G solvation = -22112.261029 eV Core-core repulsion = 18661.072908 eV Total energy + Delta-G solvation = -3451.188121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63083 -39.42840 -37.88425 -36.51862 -34.38895 -33.79465 -31.38585 -31.01829 -30.52178 -28.55797 -26.08257 -25.75811 -22.22614 -21.94046 -21.03888 -20.49149 -19.69837 -17.73962 -17.54864 -16.99711 -15.94588 -15.74581 -15.57590 -15.21124 -14.63065 -14.26979 -14.11178 -13.81632 -13.79571 -13.38290 -12.94167 -12.88777 -12.78992 -12.68364 -12.53534 -11.86472 -11.49480 -11.42516 -11.26603 -11.15907 -10.94568 -10.36266 -10.22227 -9.92140 -9.81116 -9.47620 -9.39450 -9.15148 -8.06323 -7.78971 -7.10014 -6.87601 -4.67136 2.47746 2.55816 2.74943 2.96685 2.99650 3.14724 3.36740 3.40735 3.49974 3.79852 4.21456 4.28038 4.49087 4.60649 4.80408 4.90483 5.16276 5.19416 5.38976 5.41695 5.59704 5.60893 5.63933 5.79903 5.95537 6.52207 6.58379 6.75287 6.81355 6.88541 7.04081 7.09741 7.32948 7.39331 7.70029 7.86233 8.14827 8.25319 8.35938 8.63605 8.68353 8.80042 9.62616 10.00093 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.003389 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.618023 B = 8258.830996 C = 8778.304144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.335 3.665 14 N -0.658 5.658 15 C 0.499 3.501 16 O -0.484 6.484 17 C -0.157 4.157 18 C 0.147 3.853 19 H 0.099 0.901 20 C -0.128 4.128 21 C -0.157 4.157 22 C 0.514 3.486 23 O -0.543 6.543 24 N -0.715 5.715 25 C -0.244 4.244 26 H 0.283 0.717 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.407 0.593 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.419 0.581 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -2.206 -5.658 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.308 4.308 11 C -0.035 4.035 12 N -0.274 5.274 13 C 0.110 3.890 14 N -0.304 5.304 15 C 0.284 3.716 16 O -0.355 6.355 17 C -0.199 4.199 18 C 0.040 3.960 19 H 0.117 0.883 20 C -0.166 4.166 21 C -0.198 4.198 22 C 0.300 3.700 23 O -0.421 6.421 24 N -0.370 5.370 25 C -0.270 4.270 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.141 0.859 29 H 0.242 0.758 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.260 0.740 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.876 -3.916 -6.108 13.917 hybrid contribution 1.014 2.120 0.372 2.379 sum -10.862 -1.796 -5.736 12.414 Atomic orbital electron populations 1.69768 1.07704 1.29545 1.34261 1.25958 0.94776 1.01504 0.91800 0.86303 0.80154 0.79778 0.80174 1.18685 1.20214 1.18837 1.19561 0.97917 0.90725 1.40484 0.89972 1.17556 0.89842 0.92259 0.86795 1.21903 1.05249 0.93906 1.09791 1.21758 0.90968 0.96810 0.94002 1.67209 1.15510 1.26471 1.18170 1.18191 0.87304 0.90849 0.92621 1.43455 1.26286 1.10725 1.49886 1.20550 0.85815 0.84347 0.80921 1.90756 1.66795 1.29755 1.48216 1.22251 0.96624 0.98868 1.02113 1.21361 0.88792 0.90040 0.95797 0.88294 1.22685 0.95900 1.04126 0.93907 1.22354 0.96289 1.02687 0.98442 1.21003 0.87284 0.79578 0.82151 1.90745 1.66892 1.43516 1.40906 1.46416 1.24751 1.53375 1.12499 1.21537 1.02612 0.95540 1.07267 0.90637 0.87991 0.85904 0.75786 0.87591 0.88763 0.89554 0.88820 0.88148 0.87853 0.74049 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.84 10.93 55.55 0.61 -18.23 16 2 C 0.08 1.86 5.20 -17.34 -0.09 1.77 16 3 Si 0.91 17.49 29.59 -169.99 -5.03 12.46 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.46 -11.51 9.12 -37.66 -0.34 -11.85 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.11 16 10 C -0.28 -6.89 9.90 -38.70 -0.38 -7.27 16 11 C 0.12 2.80 11.15 -17.68 -0.20 2.61 16 12 N -0.55 -13.70 7.85 -12.52 -0.10 -13.80 16 13 C 0.33 7.82 7.42 -154.70 -1.15 6.68 16 14 N -0.66 -11.93 5.39 -11.49 -0.06 -12.00 16 15 C 0.50 8.27 7.68 -10.98 -0.08 8.18 16 16 O -0.48 -9.85 13.28 5.56 0.07 -9.78 16 17 C -0.16 -1.60 5.31 -27.88 -0.15 -1.75 16 18 C 0.15 1.44 3.00 -67.01 -0.20 1.24 16 19 H 0.10 1.04 7.95 -51.93 -0.41 0.62 16 20 C -0.13 -0.81 6.70 -25.10 -0.17 -0.98 16 21 C -0.16 -1.26 6.86 -26.74 -0.18 -1.44 16 22 C 0.51 6.70 8.44 -10.77 -0.09 6.61 16 23 O -0.54 -9.52 18.03 5.56 0.10 -9.42 16 24 N -0.71 -8.99 5.51 -52.72 -0.29 -9.28 16 25 C -0.24 -6.02 8.62 -38.48 -0.33 -6.35 16 26 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 27 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 28 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 29 H 0.41 5.96 8.70 -40.82 -0.35 5.60 16 30 H 0.11 0.79 8.12 -51.92 -0.42 0.37 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.42 6.08 8.27 -40.82 -0.34 5.74 16 37 H 0.13 3.09 6.21 -52.49 -0.33 2.76 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -33.11 318.89 -8.21 -41.31 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.35 Total: 13.39 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.97 Total: 0.54 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.16 Total: -53.30 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.17 Total: -19.20 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.11 -8.21 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.272 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds