Wall clock time and date at job start Tue Mar 31 2020 02:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86808 * 119.99759 * 2 1 4 4 H 1.48503 * 109.47049 * 240.00131 * 3 2 1 5 5 H 1.48497 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46931 * 120.00099 * 3 2 1 7 7 C 1.40028 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99966 * 196.81196 * 7 2 1 9 9 C 1.41535 * 119.99861 * 16.82207 * 7 2 1 10 10 C 1.41179 * 120.99558 * 203.64957 * 9 7 2 11 11 C 1.37590 * 119.01827 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.10720 * 0.02562 * 11 10 9 13 13 C 1.32474 * 122.23517 * 359.97438 * 12 11 10 14 14 N 1.39469 * 119.58172 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99750 * 5.17487 * 14 13 12 16 16 O 1.21273 * 120.00264 * 355.12829 * 15 14 13 17 17 C 1.50700 * 119.99740 * 175.13842 * 15 14 13 18 18 C 1.52999 * 109.47312 * 179.97438 * 17 15 14 19 19 H 1.09000 * 110.21334 * 54.29615 * 18 17 15 20 20 C 1.54480 * 110.24710 * 176.22573 * 18 17 15 21 21 C 1.54634 * 101.76316 * 93.58480 * 20 18 17 22 22 C 1.51284 * 104.19546 * 24.79521 * 21 20 18 23 23 O 1.21281 * 124.93868 * 163.74913 * 22 21 20 24 24 N 1.34622 * 110.14835 * 343.76954 * 22 21 20 25 25 C 1.38593 * 120.83811 * 0.27865 * 13 12 11 26 26 H 0.96998 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.08007 * 120.48990 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.44518 * 180.02562 * 11 10 9 29 29 H 0.96997 * 119.99550 * 185.16833 * 14 13 12 30 30 H 1.09009 * 109.46994 * 299.99593 * 17 15 14 31 31 H 1.09000 * 109.47398 * 59.99106 * 17 15 14 32 32 H 1.09001 * 110.96730 * 211.70146 * 20 18 17 33 33 H 1.08992 * 110.96797 * 335.46698 * 20 18 17 34 34 H 1.08995 * 110.48655 * 143.47835 * 21 20 18 35 35 H 1.08996 * 110.48197 * 266.11922 * 21 20 18 36 36 H 0.97004 * 124.46715 * 179.53620 * 24 22 21 37 37 H 1.07998 * 120.60579 * 179.72380 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0530 -1.2325 0.2711 9 6 1.3454 -2.4123 -0.3537 10 6 1.8230 -3.6647 0.0898 11 6 1.1478 -4.8053 -0.2793 12 7 0.0679 -4.7439 -1.0372 13 6 -0.4207 -3.5947 -1.4792 14 7 -1.5653 -3.5942 -2.2762 15 6 -2.2268 -4.7458 -2.5061 16 8 -1.7790 -5.7949 -2.0944 17 6 -3.5228 -4.7296 -3.2750 18 6 -4.0624 -6.1563 -3.3950 19 1 -4.1450 -6.6119 -2.4083 20 6 -5.4380 -6.1502 -4.0980 21 6 -5.0394 -6.3891 -5.5728 22 6 -3.7078 -7.1019 -5.4865 23 8 -3.1867 -7.7126 -6.3955 24 7 -3.1852 -6.9604 -4.2540 25 6 0.1940 -2.3931 -1.1641 26 1 -0.4850 0.8400 -0.0004 27 1 2.7059 -3.7265 0.7089 28 1 1.5070 -5.7669 0.0564 29 1 -1.8853 -2.7651 -2.6648 30 1 -4.2491 -4.1091 -2.7499 31 1 -3.3494 -4.3221 -4.2709 32 1 -6.0685 -6.9589 -3.7284 33 1 -5.9326 -5.1863 -3.9788 34 1 -5.7774 -7.0182 -6.0703 35 1 -4.9306 -5.4397 -6.0971 36 1 -2.3392 -7.3403 -3.9695 37 1 -0.2051 -1.4587 -1.5301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830367756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:10 Heat of formation + Delta-G solvation = -65.389221 kcal Electronic energy + Delta-G solvation = -22113.293223 eV Core-core repulsion = 18661.072908 eV Total energy + Delta-G solvation = -3452.220315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.66228 -40.85576 -39.48095 -37.59539 -36.10649 -35.44454 -32.54013 -32.18911 -31.86048 -30.15255 -27.92307 -26.68587 -23.87625 -23.46871 -22.03676 -21.50130 -21.05073 -19.45464 -18.58369 -18.32322 -17.37106 -17.06884 -16.74521 -16.55473 -16.08042 -15.84329 -15.70874 -15.14186 -14.88653 -14.64138 -14.35900 -14.18544 -14.12381 -13.74459 -13.39385 -13.21990 -12.93591 -12.81705 -12.65490 -12.14104 -12.06553 -11.94958 -11.78029 -11.46640 -11.13975 -10.98052 -10.87939 -10.14892 -9.95445 -9.58688 -8.86285 -8.65241 -6.57392 0.75202 0.99768 1.40987 1.51300 1.56817 1.58863 1.93362 2.18656 2.20552 2.47726 2.79837 3.40938 3.58446 3.74501 3.77814 3.88501 4.18285 4.23761 4.43022 4.54462 4.66751 4.76173 4.85022 4.87793 4.92396 4.98344 5.08751 5.15406 5.21070 5.23491 5.47499 5.65324 5.84662 5.89762 6.14081 6.15574 6.47591 6.63485 6.78624 6.82195 7.23243 7.35740 7.84547 8.25001 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.003389 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.618023 B = 8258.830996 C = 8778.304144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.042 3.958 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.488 4.488 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.302 4.302 11 C 0.112 3.888 12 N -0.576 5.576 13 C 0.333 3.667 14 N -0.654 5.654 15 C 0.490 3.510 16 O -0.526 6.526 17 C -0.141 4.141 18 C 0.140 3.860 19 H 0.090 0.910 20 C -0.110 4.110 21 C -0.147 4.147 22 C 0.501 3.499 23 O -0.601 6.601 24 N -0.723 5.723 25 C -0.263 4.263 26 H 0.294 0.706 27 H 0.112 0.888 28 H 0.147 0.853 29 H 0.423 0.577 30 H 0.148 0.852 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.403 0.597 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -0.341 -6.096 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.175 4.175 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.518 4.518 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.326 4.326 11 C -0.041 4.041 12 N -0.296 5.296 13 C 0.107 3.893 14 N -0.302 5.302 15 C 0.278 3.722 16 O -0.400 6.400 17 C -0.182 4.182 18 C 0.034 3.966 19 H 0.108 0.892 20 C -0.147 4.147 21 C -0.187 4.187 22 C 0.289 3.711 23 O -0.483 6.483 24 N -0.375 5.375 25 C -0.289 4.289 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.164 0.836 29 H 0.261 0.739 30 H 0.165 0.835 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.240 0.760 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.215 -2.029 -6.539 15.778 hybrid contribution 1.713 1.479 0.554 2.330 sum -12.503 -0.550 -5.985 13.872 Atomic orbital electron populations 1.69789 1.08937 1.31154 1.33444 1.26781 0.95591 1.04426 0.90749 0.85190 0.78830 0.75332 0.80017 1.18576 1.18694 1.18571 1.19848 0.98233 0.91829 1.41918 0.90029 1.17989 0.90770 0.93172 0.87456 1.22074 1.06035 0.93889 1.10632 1.22186 0.90711 0.97739 0.93497 1.67358 1.16140 1.27115 1.19026 1.18492 0.88353 0.90115 0.92320 1.43569 1.24942 1.12447 1.49203 1.21789 0.87208 0.82955 0.80240 1.90739 1.68192 1.31123 1.49898 1.22319 0.93418 1.00024 1.02400 1.21620 0.90313 0.89160 0.95505 0.89224 1.22743 0.93626 1.06789 0.91575 1.22416 0.93037 1.03064 1.00156 1.21993 0.88850 0.78908 0.81300 1.90704 1.68789 1.46164 1.42671 1.46699 1.24412 1.53231 1.13123 1.21535 1.03178 0.95947 1.08234 0.89528 0.86954 0.83567 0.73936 0.83461 0.86618 0.88238 0.85088 0.86690 0.85741 0.75993 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.40 10.93 21.84 0.24 -38.16 16 2 C 0.04 1.98 5.20 85.29 0.44 2.42 16 3 Si 0.99 35.11 29.59 68.60 2.03 37.14 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.49 -25.09 9.12 23.52 0.21 -24.87 16 8 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 9 C 0.11 6.06 5.60 -21.11 -0.12 5.94 16 10 C -0.30 -15.06 9.90 22.84 0.23 -14.84 16 11 C 0.11 5.42 11.15 84.50 0.94 6.36 16 12 N -0.58 -29.03 7.85 -193.54 -1.52 -30.55 16 13 C 0.33 15.78 7.42 132.75 0.98 16.77 16 14 N -0.65 -23.30 5.39 -308.66 -1.66 -24.96 16 15 C 0.49 15.71 7.68 87.66 0.67 16.39 16 16 O -0.53 -21.58 13.28 -3.01 -0.04 -21.62 16 17 C -0.14 -2.39 5.31 29.85 0.16 -2.24 16 18 C 0.14 2.37 3.00 45.44 0.14 2.51 16 19 H 0.09 1.73 7.95 -2.39 -0.02 1.71 16 20 C -0.11 -0.87 6.70 31.65 0.21 -0.66 16 21 C -0.15 -1.83 6.86 30.59 0.21 -1.62 16 22 C 0.50 12.67 8.44 87.87 0.74 13.41 16 23 O -0.60 -21.61 18.03 -3.03 -0.05 -21.67 16 24 N -0.72 -17.84 5.51 -439.17 -2.42 -20.26 16 25 C -0.26 -13.27 8.62 22.99 0.20 -13.07 16 26 H 0.29 12.38 8.29 -92.71 -0.77 11.61 16 27 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 28 H 0.15 6.11 8.06 -2.91 -0.02 6.09 16 29 H 0.42 11.80 8.70 -92.71 -0.81 10.99 16 30 H 0.15 1.39 8.12 -2.38 -0.02 1.37 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.13 0.18 7.87 -2.39 -0.02 0.17 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.40 12.20 8.27 -92.71 -0.77 11.43 16 37 H 0.12 6.17 6.21 -2.91 -0.02 6.15 16 Total: -1.00 -76.62 318.89 1.15 -75.47 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.44 Total: 38.10 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.02 Total: 6.51 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -5.36 Total: -113.93 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.09 Total: -43.29 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -76.62 1.15 -75.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830367756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.082 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds