Wall clock time and date at job start Tue Mar 31 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86801 * 119.99444 * 2 1 4 4 H 1.48500 * 109.47357 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47279 * 120.00267 * 3 2 1 6 6 H 1.48504 * 109.47083 * 240.00104 * 3 2 1 7 7 C 1.40264 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 160.48817 * 7 2 1 9 9 C 1.40891 * 120.00515 * 340.48836 * 7 2 1 10 10 C 1.40705 * 120.32424 * 325.78744 * 9 7 2 11 11 C 1.37596 * 119.88178 * 179.97438 * 10 9 7 12 12 C 1.38825 * 120.57126 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67414 * 0.02562 * 12 11 10 14 14 C 1.39228 * 120.09132 * 359.66802 * 13 12 11 15 15 C 1.47429 * 120.27970 * 180.30190 * 14 13 12 16 16 O 1.21612 * 119.99449 * 176.29596 * 15 14 13 17 17 N 1.34774 * 120.00547 * 356.29836 * 15 14 13 18 18 N 1.40094 * 120.00414 * 179.97438 * 17 15 14 19 19 C 1.46383 * 119.32986 * 254.72900 * 18 17 15 20 20 C 1.53494 * 109.01474 * 150.82528 * 19 18 17 21 21 C 1.53240 * 108.43240 * 55.78748 * 20 19 18 22 22 N 1.46381 * 109.15358 * 304.38124 * 21 20 19 23 23 C 1.34137 * 121.34044 * 29.06396 * 22 21 20 24 24 O 1.21585 * 118.69826 * 179.45033 * 23 22 21 25 25 H 0.97006 * 119.99143 * 174.95503 * 1 2 3 26 26 H 1.08011 * 120.06169 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.71204 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.66020 * 179.97438 * 12 11 10 29 29 H 1.07996 * 119.95010 * 179.97438 * 13 12 11 30 30 H 0.97003 * 119.99595 * 359.97438 * 17 15 14 31 31 H 1.09005 * 109.52232 * 270.86135 * 19 18 17 32 32 H 1.08999 * 109.52232 * 31.05556 * 19 18 17 33 33 H 1.08998 * 109.79871 * 296.04228 * 20 19 18 34 34 H 1.08998 * 109.73144 * 175.49262 * 20 19 18 35 35 H 1.08999 * 109.52743 * 184.48027 * 21 20 19 36 36 H 1.09003 * 109.57756 * 64.31475 * 21 20 19 37 37 H 0.97004 * 119.33250 * 209.03421 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2751 2.7465 0.0006 5 1 3.0940 1.6966 1.2125 6 1 3.0939 1.6966 -1.2125 7 6 2.0077 -1.2147 0.0005 8 1 3.0412 -1.2416 -0.3118 9 6 1.3641 -2.3997 0.4086 10 6 0.3922 -2.3664 1.4255 11 6 -0.2310 -3.5291 1.8165 12 6 0.0907 -4.7389 1.2164 13 6 1.0426 -4.7987 0.2160 14 6 1.6859 -3.6382 -0.2057 15 6 2.6971 -3.6962 -1.2770 16 8 3.2069 -2.6714 -1.6880 17 7 3.0565 -4.8848 -1.8009 18 7 4.0170 -4.9398 -2.8193 19 6 3.5894 -5.1994 -4.1950 20 6 4.5731 -4.5238 -5.1604 21 6 5.9845 -5.0328 -4.8487 22 7 6.2827 -4.7874 -3.4368 23 6 5.3104 -4.7590 -2.5131 24 8 5.6135 -4.5612 -1.3523 25 1 -0.4849 -0.8369 -0.0739 26 1 0.1358 -1.4297 1.8983 27 1 -0.9763 -3.5004 2.5976 28 1 -0.4074 -5.6427 1.5351 29 1 1.2841 -5.7462 -0.2425 30 1 2.6501 -5.7022 -1.4728 31 1 3.5767 -6.2743 -4.3758 32 1 2.5905 -4.7912 -4.3491 33 1 4.5364 -3.4425 -5.0280 34 1 4.3118 -4.7759 -6.1881 35 1 6.7077 -4.5052 -5.4707 36 1 6.0404 -6.1022 -5.0523 37 1 7.2021 -4.6427 -3.1634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867251010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:19 Heat of formation + Delta-G solvation = -3.031706 kcal Electronic energy + Delta-G solvation = -23152.348137 eV Core-core repulsion = 19702.831847 eV Total energy + Delta-G solvation = -3449.516290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52552 -38.68301 -36.92163 -36.28878 -34.93379 -33.93209 -31.84117 -30.59563 -29.59602 -29.00950 -25.78675 -25.14526 -23.49076 -22.36321 -21.02771 -19.96061 -19.34485 -18.08846 -17.52732 -17.14036 -16.63529 -15.85638 -15.45116 -14.75259 -14.25966 -14.21482 -14.03648 -13.83125 -13.77656 -13.63121 -13.29755 -12.74729 -12.31522 -12.21860 -11.83694 -11.51441 -11.49057 -11.13675 -10.92306 -10.75116 -10.35117 -10.17035 -9.97555 -9.67644 -9.16556 -9.05594 -9.00207 -8.68775 -8.28775 -7.80616 -7.60842 -7.15423 -4.46494 2.10055 2.23349 2.74224 3.21794 3.32577 3.40656 3.42945 3.61223 4.04786 4.07509 4.48367 4.56448 4.63358 4.74540 4.98891 5.18586 5.27372 5.37241 5.46445 5.58835 5.84113 5.89575 5.98746 6.14447 6.30903 6.45363 6.70809 6.97930 7.10160 7.25423 7.43133 7.49003 7.59872 7.71195 7.85861 7.91637 8.06591 8.20045 8.27335 8.72102 8.79097 8.86009 9.44332 10.03782 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.005790 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.942087 B = 4834.940233 C = 5972.045395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.032 3.968 3 Si 1.070 2.930 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.123 3.877 10 C -0.198 4.198 11 C -0.075 4.075 12 C -0.257 4.257 13 C -0.042 4.042 14 C -0.256 4.256 15 C 0.571 3.429 16 O -0.518 6.518 17 N -0.524 5.524 18 N -0.419 5.419 19 C 0.119 3.881 20 C -0.153 4.153 21 C 0.111 3.889 22 N -0.737 5.737 23 C 0.715 3.285 24 O -0.577 6.577 25 H 0.298 0.702 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.405 0.595 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -9.433 -10.399 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.189 4.189 3 Si 0.893 3.107 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.491 4.491 8 H 0.123 0.877 9 C 0.118 3.882 10 C -0.217 4.217 11 C -0.094 4.094 12 C -0.277 4.277 13 C -0.061 4.061 14 C -0.263 4.263 15 C 0.365 3.635 16 O -0.392 6.392 17 N -0.275 5.275 18 N -0.246 5.246 19 C -0.004 4.004 20 C -0.192 4.192 21 C -0.014 4.014 22 N -0.398 5.398 23 C 0.415 3.585 24 O -0.452 6.452 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.246 0.754 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.768 -6.935 -10.075 13.522 hybrid contribution 0.207 -2.288 0.019 2.298 sum 5.975 -9.223 -10.055 14.895 Atomic orbital electron populations 1.70399 1.08194 1.34271 1.28643 1.27263 0.95673 1.04663 0.91346 0.83572 0.75543 0.73253 0.78371 1.19877 1.19855 1.19844 1.21201 1.01719 0.91978 1.34216 0.87700 1.17451 0.89689 0.91825 0.89192 1.21238 1.02828 0.97217 1.00401 1.20749 0.97636 0.93149 0.97836 1.20236 1.05866 0.96745 1.04812 1.20712 0.94835 0.95115 0.95477 1.19156 1.07546 0.95630 1.03962 1.18758 0.81619 0.81579 0.81583 1.90682 1.54616 1.32801 1.61071 1.45175 1.37517 1.10063 1.34746 1.45404 1.00237 1.76885 1.02085 1.21858 0.99786 0.99670 0.79122 1.22274 0.94467 1.02557 0.99914 1.21514 0.97070 1.00459 0.82315 1.44886 1.09270 1.78842 1.06771 1.15385 0.80200 0.78027 0.84855 1.90992 1.80753 1.55614 1.17829 0.88817 0.87418 0.88757 0.88738 0.89099 0.75373 0.91505 0.89565 0.89777 0.88261 0.89937 0.91850 0.74771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.35 12.58 55.56 0.70 -20.65 16 2 C 0.03 0.86 5.03 -17.30 -0.09 0.77 16 3 Si 1.07 23.20 29.98 -169.99 -5.10 18.11 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.46 -13.18 7.64 -37.82 -0.29 -13.47 16 8 H 0.11 3.19 5.94 -52.49 -0.31 2.88 16 9 C 0.12 3.36 5.17 -106.54 -0.55 2.81 16 10 C -0.20 -4.98 7.87 -38.88 -0.31 -5.29 16 11 C -0.07 -1.66 10.01 -39.60 -0.40 -2.06 16 12 C -0.26 -5.41 10.03 -39.37 -0.39 -5.80 16 13 C -0.04 -0.91 9.52 -39.22 -0.37 -1.28 16 14 C -0.26 -6.44 5.92 -104.37 -0.62 -7.05 16 15 C 0.57 14.12 7.39 -12.52 -0.09 14.02 16 16 O -0.52 -14.64 13.65 5.27 0.07 -14.57 16 17 N -0.52 -10.35 5.44 30.43 0.17 -10.18 16 18 N -0.42 -7.31 3.15 -65.39 -0.21 -7.52 16 19 C 0.12 1.42 6.82 -3.85 -0.03 1.39 16 20 C -0.15 -1.44 6.21 -26.35 -0.16 -1.60 16 21 C 0.11 0.94 7.20 -3.98 -0.03 0.91 16 22 N -0.74 -9.68 5.58 -65.53 -0.37 -10.05 16 23 C 0.71 13.44 7.91 -88.06 -0.70 12.75 16 24 O -0.58 -13.83 17.03 5.29 0.09 -13.74 16 25 H 0.30 8.18 6.57 -40.82 -0.27 7.91 16 26 H 0.11 2.76 6.95 -52.48 -0.36 2.39 16 27 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.09 1.59 6.41 -52.49 -0.34 1.25 16 30 H 0.41 6.80 6.87 -182.60 -1.26 5.55 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.41 4.81 8.88 -40.82 -0.36 4.45 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -36.07 312.09 -9.04 -45.11 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.08 Total: 12.70 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -4.02 Total: -3.91 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.29 Total: -48.40 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: 0.16 Total: -28.31 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.10 Total: 18.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.07 -9.04 -45.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867251010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.082 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds