Wall clock time and date at job start Tue Mar 31 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86801 * 119.99444 * 2 1 4 4 H 1.48500 * 109.47357 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47279 * 120.00267 * 3 2 1 6 6 H 1.48504 * 109.47083 * 240.00104 * 3 2 1 7 7 C 1.40264 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 160.48817 * 7 2 1 9 9 C 1.40891 * 120.00515 * 340.48836 * 7 2 1 10 10 C 1.40705 * 120.32424 * 325.78744 * 9 7 2 11 11 C 1.37596 * 119.88178 * 179.97438 * 10 9 7 12 12 C 1.38825 * 120.57126 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67414 * 0.02562 * 12 11 10 14 14 C 1.39228 * 120.09132 * 359.66802 * 13 12 11 15 15 C 1.47429 * 120.27970 * 180.30190 * 14 13 12 16 16 O 1.21612 * 119.99449 * 176.29596 * 15 14 13 17 17 N 1.34774 * 120.00547 * 356.29836 * 15 14 13 18 18 N 1.40094 * 120.00414 * 179.97438 * 17 15 14 19 19 C 1.46383 * 119.32986 * 254.72900 * 18 17 15 20 20 C 1.53494 * 109.01474 * 150.82528 * 19 18 17 21 21 C 1.53240 * 108.43240 * 55.78748 * 20 19 18 22 22 N 1.46381 * 109.15358 * 304.38124 * 21 20 19 23 23 C 1.34137 * 121.34044 * 29.06396 * 22 21 20 24 24 O 1.21585 * 118.69826 * 179.45033 * 23 22 21 25 25 H 0.97006 * 119.99143 * 174.95503 * 1 2 3 26 26 H 1.08011 * 120.06169 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.71204 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.66020 * 179.97438 * 12 11 10 29 29 H 1.07996 * 119.95010 * 179.97438 * 13 12 11 30 30 H 0.97003 * 119.99595 * 359.97438 * 17 15 14 31 31 H 1.09005 * 109.52232 * 270.86135 * 19 18 17 32 32 H 1.08999 * 109.52232 * 31.05556 * 19 18 17 33 33 H 1.08998 * 109.79871 * 296.04228 * 20 19 18 34 34 H 1.08998 * 109.73144 * 175.49262 * 20 19 18 35 35 H 1.08999 * 109.52743 * 184.48027 * 21 20 19 36 36 H 1.09003 * 109.57756 * 64.31475 * 21 20 19 37 37 H 0.97004 * 119.33250 * 209.03421 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2751 2.7465 0.0006 5 1 3.0940 1.6966 1.2125 6 1 3.0939 1.6966 -1.2125 7 6 2.0077 -1.2147 0.0005 8 1 3.0412 -1.2416 -0.3118 9 6 1.3641 -2.3997 0.4086 10 6 0.3922 -2.3664 1.4255 11 6 -0.2310 -3.5291 1.8165 12 6 0.0907 -4.7389 1.2164 13 6 1.0426 -4.7987 0.2160 14 6 1.6859 -3.6382 -0.2057 15 6 2.6971 -3.6962 -1.2770 16 8 3.2069 -2.6714 -1.6880 17 7 3.0565 -4.8848 -1.8009 18 7 4.0170 -4.9398 -2.8193 19 6 3.5894 -5.1994 -4.1950 20 6 4.5731 -4.5238 -5.1604 21 6 5.9845 -5.0328 -4.8487 22 7 6.2827 -4.7874 -3.4368 23 6 5.3104 -4.7590 -2.5131 24 8 5.6135 -4.5612 -1.3523 25 1 -0.4849 -0.8369 -0.0739 26 1 0.1358 -1.4297 1.8983 27 1 -0.9763 -3.5004 2.5976 28 1 -0.4074 -5.6427 1.5351 29 1 1.2841 -5.7462 -0.2425 30 1 2.6501 -5.7022 -1.4728 31 1 3.5767 -6.2743 -4.3758 32 1 2.5905 -4.7912 -4.3491 33 1 4.5364 -3.4425 -5.0280 34 1 4.3118 -4.7759 -6.1881 35 1 6.7077 -4.5052 -5.4707 36 1 6.0404 -6.1022 -5.0523 37 1 7.2021 -4.6427 -3.1634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867251010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:18 Heat of formation + Delta-G solvation = -30.308396 kcal Electronic energy + Delta-G solvation = -23153.530943 eV Core-core repulsion = 19702.831847 eV Total energy + Delta-G solvation = -3450.699096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90219 -40.46156 -38.73497 -37.58106 -36.48302 -35.79425 -33.27714 -32.03193 -31.41590 -30.63332 -27.27812 -26.59634 -24.93673 -23.86212 -22.84791 -21.60082 -20.78181 -19.89522 -18.77691 -18.44896 -18.33349 -17.15185 -16.73480 -16.50009 -16.05933 -15.95574 -15.59217 -15.38116 -15.19789 -14.80528 -14.60742 -14.54442 -14.09067 -13.79140 -13.25359 -12.97785 -12.75249 -12.54036 -12.47522 -12.35814 -12.06686 -11.97996 -11.59306 -11.40487 -11.01214 -10.72022 -10.51328 -10.20567 -9.77973 -9.67186 -9.52607 -9.15532 -6.51148 0.34539 0.74805 0.87936 1.41787 1.57323 1.72892 2.01653 2.19496 2.26475 2.53034 2.68871 3.25207 3.52125 3.72444 3.85808 4.16832 4.19531 4.24265 4.38384 4.42799 4.58027 4.69842 4.74433 4.79138 4.84644 5.09120 5.14297 5.31960 5.38398 5.59919 5.65664 5.80034 5.90196 5.99244 6.03466 6.14727 6.30220 6.46931 6.67657 6.77723 6.83961 7.29955 7.74626 8.00060 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.005790 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.942087 B = 4834.940233 C = 5972.045395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.001 3.999 3 Si 1.112 2.888 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.098 3.902 10 C -0.222 4.222 11 C -0.068 4.068 12 C -0.239 4.239 13 C -0.041 4.041 14 C -0.278 4.278 15 C 0.565 3.435 16 O -0.565 6.565 17 N -0.513 5.513 18 N -0.422 5.422 19 C 0.107 3.893 20 C -0.149 4.149 21 C 0.106 3.894 22 N -0.724 5.724 23 C 0.701 3.299 24 O -0.644 6.644 25 H 0.284 0.716 26 H 0.092 0.908 27 H 0.129 0.871 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.421 0.579 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.440 -12.428 -11.884 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.215 4.215 3 Si 0.930 3.070 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.088 0.912 9 C 0.094 3.906 10 C -0.242 4.242 11 C -0.087 4.087 12 C -0.257 4.257 13 C -0.059 4.059 14 C -0.285 4.285 15 C 0.359 3.641 16 O -0.443 6.443 17 N -0.263 5.263 18 N -0.250 5.250 19 C -0.013 4.013 20 C -0.188 4.188 21 C -0.017 4.017 22 N -0.383 5.383 23 C 0.401 3.599 24 O -0.525 6.525 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.147 0.853 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.265 0.735 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 5.507 -10.014 -11.628 16.303 hybrid contribution 0.278 -1.704 0.407 1.774 sum 5.784 -11.718 -11.221 17.224 Atomic orbital electron populations 1.70499 1.08321 1.33132 1.31474 1.28385 0.95891 1.07052 0.90156 0.83070 0.74884 0.70473 0.78588 1.18002 1.18725 1.20072 1.21039 1.00763 0.93980 1.38137 0.91168 1.17854 0.90426 0.92602 0.89700 1.21197 1.03990 0.98114 1.00855 1.21200 0.97127 0.92453 0.97908 1.20841 1.04246 0.97830 1.02832 1.21164 0.93866 0.95592 0.95323 1.19566 1.08159 0.96458 1.04279 1.18854 0.81369 0.82325 0.81572 1.90655 1.56271 1.34877 1.62500 1.44698 1.37222 1.09066 1.35335 1.45829 0.99467 1.76524 1.03173 1.22348 1.00109 1.02489 0.76377 1.22352 0.94563 1.00175 1.01694 1.21952 0.97216 1.03031 0.79458 1.44925 1.08393 1.77000 1.08027 1.15847 0.81266 0.77886 0.84897 1.90937 1.82026 1.58637 1.20890 0.90337 0.88980 0.85274 0.84034 0.84613 0.73485 0.87309 0.90397 0.93217 0.83465 0.86732 0.88431 0.74100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.97 12.58 21.88 0.28 -45.70 16 2 C 0.00 0.06 5.03 85.36 0.43 0.49 16 3 Si 1.11 49.36 29.98 68.60 2.06 51.41 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.51 -31.20 7.64 23.41 0.18 -31.02 16 8 H 0.07 4.68 5.94 -2.91 -0.02 4.66 16 9 C 0.10 5.61 5.17 -21.11 -0.11 5.51 16 10 C -0.22 -11.49 7.87 22.72 0.18 -11.31 16 11 C -0.07 -2.90 10.01 22.26 0.22 -2.68 16 12 C -0.24 -9.10 10.03 22.41 0.22 -8.88 16 13 C -0.04 -1.65 9.52 22.50 0.21 -1.44 16 14 C -0.28 -14.24 5.92 -19.70 -0.12 -14.36 16 15 C 0.57 28.98 7.39 86.66 0.64 29.62 16 16 O -0.56 -34.08 13.65 -4.07 -0.06 -34.14 16 17 N -0.51 -20.20 5.44 -175.88 -0.96 -21.16 16 18 N -0.42 -14.48 3.15 -479.41 -1.51 -15.99 16 19 C 0.11 2.31 6.82 86.57 0.59 2.90 16 20 C -0.15 -2.35 6.21 30.84 0.19 -2.16 16 21 C 0.11 1.39 7.20 86.48 0.62 2.01 16 22 N -0.72 -18.01 5.58 -479.85 -2.68 -20.69 16 23 C 0.70 26.46 7.91 179.45 1.42 27.88 16 24 O -0.64 -32.13 17.03 -3.98 -0.07 -32.20 16 25 H 0.28 16.49 6.57 -92.70 -0.61 15.89 16 26 H 0.09 4.95 6.95 -2.91 -0.02 4.93 16 27 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 29 H 0.14 4.18 6.41 -2.91 -0.02 4.16 16 30 H 0.42 13.44 6.87 -213.32 -1.47 11.97 16 31 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.42 9.38 8.88 -92.71 -0.82 8.55 16 Total: -1.00 -88.44 312.09 0.75 -87.69 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -1.00 Total: 34.22 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.69 Total: -3.44 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -4.87 Total: -103.54 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -0.12 Total: -66.34 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.06 Total: 51.41 kcal Total: -88.44 0.75 -87.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867251010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.382 kcal (2) G-P(sol) polarization free energy of solvation -88.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds