Wall clock time and date at job start Tue Mar 31 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47357 * 224.55974 * 3 2 1 5 5 C 1.42900 * 114.00187 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47175 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.47004 * 64.99621 * 6 5 4 8 8 C 1.34776 * 119.99671 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99909 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00231 * 180.02562 * 8 7 6 11 11 C 1.39455 * 120.00101 * 185.06533 * 10 8 7 12 12 C 1.38646 * 119.64673 * 185.36107 * 11 10 8 13 13 C 1.40816 * 118.67333 * 179.72003 * 12 11 10 14 14 C 1.41550 * 120.99671 * 180.25349 * 13 12 11 15 15 H 1.07994 * 120.00155 * 153.82644 * 14 13 12 16 16 C 1.40034 * 119.99833 * 333.81979 * 14 13 12 17 17 N 1.30737 * 119.99823 * 350.11068 * 16 14 13 18 18 Si 1.86794 * 119.99546 * 170.10820 * 16 14 13 19 19 H 1.48500 * 109.47595 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47067 * 120.00622 * 18 16 14 21 21 H 1.48505 * 109.46928 * 239.99911 * 18 16 14 22 22 C 1.41160 * 118.00747 * 0.27865 * 13 12 11 23 23 C 1.36589 * 119.12658 * 359.97438 * 22 13 12 24 24 N 1.32065 * 121.26146 * 0.02562 * 23 22 13 25 25 H 4.38443 * 5.44511 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46738 * 104.55901 * 3 2 1 27 27 H 1.09003 * 109.47195 * 344.56317 * 3 2 1 28 28 H 1.08997 * 109.47347 * 59.99884 * 5 4 3 29 29 H 1.09007 * 109.46555 * 300.00190 * 5 4 3 30 30 H 1.09003 * 109.46735 * 304.99915 * 6 5 4 31 31 H 1.08997 * 109.46840 * 184.99739 * 6 5 4 32 32 H 0.96993 * 120.00002 * 0.02562 * 7 6 5 33 33 H 0.97002 * 119.99647 * 5.05696 * 10 8 7 34 34 H 1.08002 * 120.66382 * 359.97438 * 12 11 10 35 35 H 0.97006 * 119.99686 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.43978 * 179.97438 * 22 13 12 37 37 H 1.08004 * 119.37253 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9608 0.9453 5 6 4.5464 1.0422 1.0240 6 6 4.9405 2.0952 2.0618 7 7 4.5031 1.6592 3.3903 8 6 4.7444 2.4333 4.4669 9 8 5.3247 3.4936 4.3354 10 7 4.3426 2.0320 5.6891 11 6 4.4971 2.8784 6.7867 12 6 4.1853 2.4182 8.0568 13 6 4.3547 3.2881 9.1511 14 6 4.0566 2.8678 10.4695 15 1 4.5548 3.3294 11.3091 16 6 3.1155 1.8535 10.6850 17 7 2.3735 1.4293 9.6957 18 14 2.9205 1.1066 12.3860 19 1 3.8704 1.7568 13.3241 20 1 1.5304 1.3189 12.8634 21 1 3.2051 -0.3496 12.3228 22 6 4.8302 4.5921 8.8939 23 6 5.1059 4.9574 7.6069 24 7 4.9353 4.1153 6.6040 25 1 -1.0501 -0.0003 0.0000 26 1 3.0091 0.2592 -0.9947 27 1 3.0098 -0.9898 0.2735 28 1 4.9487 1.3226 0.0506 29 1 4.9499 0.0734 1.3186 30 1 4.4638 3.0441 1.8156 31 1 6.0232 2.2208 2.0587 32 1 4.0405 0.8131 3.4951 33 1 3.9457 1.1545 5.8053 34 1 3.8236 1.4113 8.2045 35 1 1.7218 0.7264 9.8449 36 1 4.9742 5.2917 9.7039 37 1 5.4703 5.9540 7.4056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:52 Heat of formation + Delta-G solvation = 24.622065 kcal Electronic energy + Delta-G solvation = -21406.783793 eV Core-core repulsion = 17958.466660 eV Total energy + Delta-G solvation = -3448.317133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76191 -38.58062 -37.85098 -34.81902 -34.12280 -33.65925 -33.29720 -30.49357 -29.86328 -28.17817 -26.88828 -25.94888 -23.08368 -21.88832 -21.43138 -20.05422 -18.79753 -18.00051 -17.62909 -17.11711 -16.50960 -15.99565 -15.31092 -15.14267 -14.96632 -14.53532 -14.15238 -14.11027 -13.49181 -13.39202 -12.92758 -12.69601 -12.58502 -12.51921 -12.14484 -11.67998 -11.40294 -11.15848 -10.88154 -10.83024 -10.79902 -10.23759 -10.07062 -9.91972 -9.70310 -9.52079 -9.35550 -8.74015 -7.92520 -7.67256 -6.97252 -6.70029 -4.58819 2.20243 2.51390 2.73767 2.83849 3.03886 3.09392 3.10189 3.27936 3.58788 3.88054 3.94616 4.20655 4.60966 4.72773 4.75822 4.89188 4.90890 5.03047 5.10738 5.59846 5.61788 5.73986 5.81488 6.01804 6.59263 6.66360 6.71691 6.81921 6.85020 6.99732 7.18318 7.27828 7.35478 7.48426 7.54616 7.92007 8.16455 8.46145 8.51383 8.77476 8.80392 9.24790 9.78185 10.13426 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.003261 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.067996 B = 8584.159907 C = 9832.481284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.197 4.197 3 C 0.173 3.827 4 O -0.378 6.378 5 C 0.051 3.949 6 C 0.145 3.855 7 N -0.750 5.750 8 C 0.692 3.308 9 O -0.537 6.537 10 N -0.668 5.668 11 C 0.355 3.645 12 C -0.243 4.243 13 C 0.142 3.858 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.795 5.795 18 Si 0.914 3.086 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.272 1.272 22 C -0.283 4.283 23 C 0.119 3.881 24 N -0.553 5.553 25 H 0.222 0.778 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.394 0.606 33 H 0.404 0.596 34 H 0.133 0.867 35 H 0.280 0.720 36 H 0.101 0.899 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -7.965 -15.074 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.197 4.197 3 C 0.097 3.903 4 O -0.297 6.297 5 C -0.026 4.026 6 C 0.020 3.980 7 N -0.409 5.409 8 C 0.392 3.608 9 O -0.408 6.408 10 N -0.316 5.316 11 C 0.129 3.871 12 C -0.269 4.269 13 C 0.134 3.866 14 C -0.485 4.485 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.421 5.421 18 Si 0.739 3.261 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.307 4.307 23 C -0.035 4.035 24 N -0.272 5.272 25 H 0.238 0.762 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.227 0.773 33 H 0.239 0.761 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.179 -6.720 -16.079 17.428 hybrid contribution -0.979 -1.702 1.517 2.481 sum -1.158 -8.423 -14.562 16.862 Atomic orbital electron populations 1.25013 0.95962 0.98939 0.98955 1.22526 0.93948 1.01597 1.01604 1.19063 0.84840 0.93077 0.93306 1.88058 1.21334 1.59634 1.60701 1.22871 0.80988 0.99475 0.99262 1.21111 0.99767 0.97122 0.79967 1.45085 1.65075 1.24770 1.06008 1.16068 0.80434 0.84040 0.80270 1.91000 1.43998 1.21768 1.84054 1.42549 1.64266 1.19151 1.05610 1.17977 0.96050 0.88679 0.84416 1.21624 1.13124 1.02283 0.89833 1.17588 0.86478 0.89364 0.93172 1.19609 1.19893 1.16178 0.92861 0.90048 1.25948 0.94082 0.95185 0.99100 1.69761 1.16281 1.23191 1.32917 0.86165 0.78938 0.79209 0.81833 1.18382 1.19924 1.19742 1.21683 1.14551 0.97638 0.96814 1.21472 0.96563 0.96908 0.88581 1.67181 1.22527 1.02603 1.34864 0.76160 0.90840 0.90789 0.91263 0.92190 0.90825 0.90022 0.77281 0.76142 0.84984 0.90938 0.88038 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.20 -2.02 13.73 -37.12 -0.51 -2.53 16 3 C 0.17 1.42 6.41 34.37 0.22 1.64 16 4 O -0.38 -4.06 10.25 -35.23 -0.36 -4.42 16 5 C 0.05 0.42 6.07 37.16 0.23 0.65 16 6 C 0.15 1.74 6.06 -4.04 -0.02 1.71 16 7 N -0.75 -10.89 5.51 -65.22 -0.36 -11.25 16 8 C 0.69 13.95 8.51 -86.92 -0.74 13.21 16 9 O -0.54 -13.11 14.64 5.29 0.08 -13.03 16 10 N -0.67 -13.79 5.40 -15.86 -0.09 -13.87 16 11 C 0.35 8.93 7.41 -154.68 -1.15 7.78 16 12 C -0.24 -6.30 8.62 -38.46 -0.33 -6.63 16 13 C 0.14 3.82 5.60 -106.55 -0.60 3.22 16 14 C -0.45 -11.82 9.14 -37.65 -0.34 -12.16 16 15 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 16 C 0.07 1.82 5.31 -17.34 -0.09 1.73 16 17 N -0.80 -19.81 10.70 55.55 0.59 -19.21 16 18 Si 0.91 18.15 29.57 -169.99 -5.03 13.12 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 C -0.28 -7.10 9.85 -39.07 -0.38 -7.49 16 23 C 0.12 2.94 11.10 -18.05 -0.20 2.74 16 24 N -0.55 -14.68 7.90 -12.76 -0.10 -14.78 16 25 H 0.22 1.22 7.80 -54.09 -0.42 0.80 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.39 4.73 8.49 -40.82 -0.35 4.38 16 33 H 0.40 6.90 8.72 -40.82 -0.36 6.54 16 34 H 0.13 3.39 6.11 -52.49 -0.32 3.07 16 35 H 0.28 6.29 8.29 -40.82 -0.34 5.96 16 36 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -34.55 334.58 -7.95 -42.50 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -4.37 Total: 13.03 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -3.35 Total: 2.87 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.05 Total: -59.12 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.28 Total: -17.45 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.55 -7.95 -42.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.120 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds