Wall clock time and date at job start Tue Mar 31 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47357 * 224.55974 * 3 2 1 5 5 C 1.42900 * 114.00187 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47175 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.47004 * 64.99621 * 6 5 4 8 8 C 1.34776 * 119.99671 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99909 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00231 * 180.02562 * 8 7 6 11 11 C 1.39455 * 120.00101 * 185.06533 * 10 8 7 12 12 C 1.38646 * 119.64673 * 185.36107 * 11 10 8 13 13 C 1.40816 * 118.67333 * 179.72003 * 12 11 10 14 14 C 1.41550 * 120.99671 * 180.25349 * 13 12 11 15 15 H 1.07994 * 120.00155 * 153.82644 * 14 13 12 16 16 C 1.40034 * 119.99833 * 333.81979 * 14 13 12 17 17 N 1.30737 * 119.99823 * 350.11068 * 16 14 13 18 18 Si 1.86794 * 119.99546 * 170.10820 * 16 14 13 19 19 H 1.48500 * 109.47595 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47067 * 120.00622 * 18 16 14 21 21 H 1.48505 * 109.46928 * 239.99911 * 18 16 14 22 22 C 1.41160 * 118.00747 * 0.27865 * 13 12 11 23 23 C 1.36589 * 119.12658 * 359.97438 * 22 13 12 24 24 N 1.32065 * 121.26146 * 0.02562 * 23 22 13 25 25 H 4.38443 * 5.44511 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46738 * 104.55901 * 3 2 1 27 27 H 1.09003 * 109.47195 * 344.56317 * 3 2 1 28 28 H 1.08997 * 109.47347 * 59.99884 * 5 4 3 29 29 H 1.09007 * 109.46555 * 300.00190 * 5 4 3 30 30 H 1.09003 * 109.46735 * 304.99915 * 6 5 4 31 31 H 1.08997 * 109.46840 * 184.99739 * 6 5 4 32 32 H 0.96993 * 120.00002 * 0.02562 * 7 6 5 33 33 H 0.97002 * 119.99647 * 5.05696 * 10 8 7 34 34 H 1.08002 * 120.66382 * 359.97438 * 12 11 10 35 35 H 0.97006 * 119.99686 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.43978 * 179.97438 * 22 13 12 37 37 H 1.08004 * 119.37253 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9608 0.9453 5 6 4.5464 1.0422 1.0240 6 6 4.9405 2.0952 2.0618 7 7 4.5031 1.6592 3.3903 8 6 4.7444 2.4333 4.4669 9 8 5.3247 3.4936 4.3354 10 7 4.3426 2.0320 5.6891 11 6 4.4971 2.8784 6.7867 12 6 4.1853 2.4182 8.0568 13 6 4.3547 3.2881 9.1511 14 6 4.0566 2.8678 10.4695 15 1 4.5548 3.3294 11.3091 16 6 3.1155 1.8535 10.6850 17 7 2.3735 1.4293 9.6957 18 14 2.9205 1.1066 12.3860 19 1 3.8704 1.7568 13.3241 20 1 1.5304 1.3189 12.8634 21 1 3.2051 -0.3496 12.3228 22 6 4.8302 4.5921 8.8939 23 6 5.1059 4.9574 7.6069 24 7 4.9353 4.1153 6.6040 25 1 -1.0501 -0.0003 0.0000 26 1 3.0091 0.2592 -0.9947 27 1 3.0098 -0.9898 0.2735 28 1 4.9487 1.3226 0.0506 29 1 4.9499 0.0734 1.3186 30 1 4.4638 3.0441 1.8156 31 1 6.0232 2.2208 2.0587 32 1 4.0405 0.8131 3.4951 33 1 3.9457 1.1545 5.8053 34 1 3.8236 1.4113 8.2045 35 1 1.7218 0.7264 9.8449 36 1 4.9742 5.2917 9.7039 37 1 5.4703 5.9540 7.4056 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:51 Heat of formation + Delta-G solvation = 0.662644 kcal Electronic energy + Delta-G solvation = -21407.822752 eV Core-core repulsion = 17958.466660 eV Total energy + Delta-G solvation = -3449.356091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39219 -39.89973 -39.09344 -36.27003 -35.70528 -35.46721 -34.07968 -32.41657 -31.14668 -29.68174 -27.90785 -27.59534 -24.27019 -23.76869 -22.91217 -21.72617 -19.74551 -19.42204 -19.27408 -17.97557 -17.66208 -17.26727 -16.88678 -16.41926 -16.14102 -16.02055 -15.93883 -15.62932 -14.93128 -14.69967 -14.61802 -14.31770 -14.01138 -13.48002 -13.28682 -13.14440 -12.85745 -12.68455 -12.47293 -12.07953 -11.85054 -11.54443 -11.51098 -11.48448 -11.26399 -11.17675 -10.51989 -10.07616 -9.89768 -9.61266 -8.83658 -8.56029 -6.56456 0.84787 1.01798 1.42618 1.51106 1.57097 1.57660 1.66817 1.82634 2.21917 2.29846 2.86489 2.93621 3.23192 3.58711 3.77808 3.99846 4.17711 4.24037 4.34102 4.48504 4.55118 4.68092 4.73176 4.86156 4.88858 4.95258 5.03675 5.11908 5.26244 5.50148 5.52553 5.67399 5.85524 6.00397 6.16230 6.28783 6.58223 6.60634 6.81293 6.84979 7.00533 7.63075 7.90970 8.30983 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.003261 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.067996 B = 8584.159907 C = 9832.481284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.235 4.235 3 C 0.168 3.832 4 O -0.409 6.409 5 C 0.060 3.940 6 C 0.139 3.861 7 N -0.728 5.728 8 C 0.689 3.311 9 O -0.583 6.583 10 N -0.662 5.662 11 C 0.351 3.649 12 C -0.259 4.259 13 C 0.113 3.887 14 C -0.482 4.482 15 H 0.084 0.916 16 C 0.035 3.965 17 N -0.818 5.818 18 Si 0.991 3.009 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.296 4.296 23 C 0.112 3.888 24 N -0.580 5.580 25 H 0.247 0.753 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.409 0.591 33 H 0.419 0.581 34 H 0.129 0.871 35 H 0.291 0.709 36 H 0.117 0.883 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.979 -9.613 -15.340 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.235 4.235 3 C 0.093 3.907 4 O -0.330 6.330 5 C -0.016 4.016 6 C 0.015 3.985 7 N -0.387 5.387 8 C 0.388 3.612 9 O -0.458 6.458 10 N -0.311 5.311 11 C 0.124 3.876 12 C -0.285 4.285 13 C 0.105 3.895 14 C -0.513 4.513 15 H 0.102 0.898 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.812 3.188 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.319 4.319 23 C -0.041 4.041 24 N -0.300 5.300 25 H 0.263 0.737 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.245 0.755 33 H 0.256 0.744 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.547 -8.422 -16.405 18.448 hybrid contribution -0.928 -1.202 1.518 2.147 sum -1.475 -9.624 -14.887 17.788 Atomic orbital electron populations 1.25848 0.97045 0.98207 0.98227 1.23334 0.95332 1.02395 1.02403 1.19328 0.83874 0.93578 0.93912 1.87995 1.22515 1.60733 1.61771 1.22877 0.80288 0.99250 0.99232 1.21346 1.00022 0.97772 0.79368 1.44968 1.63790 1.24393 1.05503 1.16280 0.80018 0.84002 0.80889 1.90961 1.46111 1.23957 1.84758 1.42452 1.64206 1.19305 1.05144 1.18194 0.95118 0.88814 0.85479 1.21598 1.14440 1.02183 0.90273 1.18034 0.87127 0.90308 0.94064 1.19895 1.20970 1.17669 0.92723 0.89818 1.26839 0.93030 0.94830 1.03364 1.69797 1.16276 1.23262 1.35043 0.85014 0.79005 0.78462 0.76346 1.18196 1.19163 1.18641 1.21872 1.14944 0.97615 0.97520 1.21924 0.95910 0.97865 0.88374 1.67302 1.23700 1.03412 1.35594 0.73700 0.88698 0.88717 0.88295 0.89779 0.92995 0.89405 0.75527 0.74385 0.85307 0.89831 0.86517 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 19.25 74.32 1.43 -1.60 16 2 C -0.23 -4.55 13.73 31.13 0.43 -4.12 16 3 C 0.17 2.40 6.41 70.18 0.45 2.85 16 4 O -0.41 -8.03 10.25 -148.98 -1.53 -9.56 16 5 C 0.06 0.83 6.07 71.98 0.44 1.27 16 6 C 0.14 3.17 6.06 86.38 0.52 3.70 16 7 N -0.73 -20.48 5.51 -478.53 -2.64 -23.11 16 8 C 0.69 27.83 8.51 179.05 1.52 29.36 16 9 O -0.58 -28.95 14.64 -3.98 -0.06 -29.01 16 10 N -0.66 -27.54 5.40 -322.36 -1.74 -29.27 16 11 C 0.35 18.01 7.41 132.76 0.98 18.99 16 12 C -0.26 -13.73 8.62 23.00 0.20 -13.53 16 13 C 0.11 6.18 5.60 -21.11 -0.12 6.06 16 14 C -0.48 -25.27 9.14 23.52 0.21 -25.06 16 15 H 0.08 4.20 7.87 -2.91 -0.02 4.18 16 16 C 0.04 1.71 5.31 85.29 0.45 2.16 16 17 N -0.82 -40.52 10.70 21.84 0.23 -40.29 16 18 Si 0.99 36.32 29.57 68.60 2.03 38.35 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 C -0.30 -15.08 9.85 22.60 0.22 -14.85 16 23 C 0.11 5.65 11.10 84.27 0.94 6.58 16 24 N -0.58 -31.37 7.90 -194.27 -1.53 -32.91 16 25 H 0.25 2.34 7.80 -4.41 -0.03 2.31 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.41 9.17 8.49 -92.71 -0.79 8.38 16 33 H 0.42 14.26 8.72 -92.71 -0.81 13.45 16 34 H 0.13 6.76 6.11 -2.91 -0.02 6.74 16 35 H 0.29 12.84 8.29 -92.70 -0.77 12.07 16 36 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 37 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -76.13 334.58 1.97 -74.16 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.48 Total: 39.83 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 7.68 Total: 11.81 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -5.67 Total: -125.58 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.58 Total: -38.57 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -76.13 1.97 -74.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.825 kcal (2) G-P(sol) polarization free energy of solvation -76.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds