Wall clock time and date at job start Tue Mar 31 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47559 * 44.06986 * 3 2 1 5 5 H 1.09002 * 109.47023 * 305.00097 * 4 3 2 6 6 C 1.53001 * 109.47165 * 184.99508 * 4 3 2 7 7 O 1.42890 * 109.47652 * 304.99994 * 6 4 3 8 8 N 1.46501 * 109.46877 * 64.99763 * 4 3 2 9 9 C 1.34780 * 119.99777 * 204.99830 * 8 4 3 10 10 O 1.21569 * 120.00136 * 0.02562 * 9 8 4 11 11 N 1.34776 * 119.99617 * 179.97438 * 9 8 4 12 12 C 1.39460 * 119.99913 * 184.83779 * 11 9 8 13 13 C 1.38639 * 119.65172 * 174.73053 * 12 11 9 14 14 C 1.40826 * 118.67718 * 179.97438 * 13 12 11 15 15 C 1.41545 * 120.99626 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99770 * 149.52151 * 15 14 13 17 17 C 1.40035 * 120.00097 * 329.51524 * 15 14 13 18 18 N 1.30740 * 119.99742 * 167.65574 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 347.65725 * 17 15 14 20 20 H 1.48502 * 109.47101 * 92.44931 * 19 17 15 21 21 H 1.48502 * 109.46995 * 212.44787 * 19 17 15 22 22 H 1.48496 * 109.47233 * 332.44966 * 19 17 15 23 23 C 1.41161 * 118.00281 * 0.02562 * 14 13 12 24 24 C 1.36584 * 119.12701 * 359.97438 * 23 14 13 25 25 N 1.32072 * 121.26352 * 359.74031 * 24 23 14 26 26 H 4.44653 * 5.63436 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47026 * 284.06576 * 3 2 1 28 28 H 1.09000 * 109.46701 * 164.06879 * 3 2 1 29 29 H 1.08999 * 109.46878 * 65.00385 * 6 4 3 30 30 H 1.09001 * 109.46609 * 184.99706 * 6 4 3 31 31 H 0.96691 * 114.00642 * 179.97438 * 7 6 4 32 32 H 0.97003 * 120.00265 * 25.00542 * 8 4 3 33 33 H 0.97003 * 120.00514 * 5.11418 * 11 9 8 34 34 H 1.08001 * 120.66148 * 359.97438 * 13 12 11 35 35 H 0.97007 * 120.00024 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43563 * 180.02562 * 23 14 13 37 37 H 1.08005 * 119.37120 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0355 -1.0033 5 1 2.7224 -2.0085 -0.7734 6 6 4.6814 -1.1234 -0.9142 7 8 5.2453 0.1762 -1.1008 8 7 2.7688 -0.6356 -2.3582 9 6 2.6425 -1.5659 -3.3253 10 8 2.8499 -2.7369 -3.0730 11 7 2.2852 -1.1980 -4.5716 12 6 2.0562 -2.1687 -5.5465 13 6 1.5835 -1.7901 -6.7936 14 6 1.3600 -2.7871 -7.7628 15 6 0.8776 -2.4557 -9.0516 16 1 1.1553 -3.0586 -9.9035 17 6 0.0402 -1.3463 -9.2219 18 7 -0.2104 -0.8948 -10.4230 19 14 -0.7186 -0.5116 -7.7330 20 1 0.1607 0.5985 -7.2862 21 1 -2.0533 0.0293 -8.0955 22 1 -0.8666 -1.4990 -6.6338 23 6 1.6305 -4.1269 -7.4100 24 6 2.0944 -4.4033 -6.1554 25 7 2.2981 -3.4423 -5.2727 26 1 -1.0499 -0.0001 -0.0004 27 1 3.0094 -0.2489 0.9968 28 1 3.0088 0.9890 -0.2821 29 1 4.9666 -1.5060 0.0657 30 1 5.0524 -1.7950 -1.6885 31 1 6.2110 0.1961 -1.0564 32 1 2.6030 0.2987 -2.5595 33 1 2.1913 -0.2580 -4.7918 34 1 1.3905 -0.7513 -7.0174 35 1 -0.7908 -0.1266 -10.5411 36 1 1.4734 -4.9228 -8.1229 37 1 2.3022 -5.4271 -5.8812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871737504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:24 Heat of formation + Delta-G solvation = 16.658072 kcal Electronic energy + Delta-G solvation = -22242.498748 eV Core-core repulsion = 18793.836271 eV Total energy + Delta-G solvation = -3448.662477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12910 -38.62797 -37.35634 -35.37256 -34.31104 -33.77560 -33.08976 -31.28428 -30.49351 -28.53952 -26.81202 -25.97411 -22.72628 -22.34860 -20.94109 -20.13227 -18.78223 -18.05111 -17.77357 -17.42644 -16.38499 -15.79289 -15.40271 -15.17664 -14.75596 -14.41491 -14.34334 -14.14313 -13.61770 -13.51294 -13.36416 -13.00133 -12.93750 -12.70280 -12.02832 -11.81824 -11.58314 -10.96558 -10.82998 -10.65799 -10.46115 -10.33022 -10.10313 -10.03212 -9.88169 -9.67294 -9.35865 -8.90800 -8.20349 -7.85439 -7.23260 -7.03448 -4.72875 2.42042 2.64669 2.69633 2.72115 2.89196 3.02233 3.13791 3.26038 3.69490 3.89752 4.11048 4.20006 4.38337 4.60994 4.76267 5.03390 5.14361 5.22353 5.42075 5.43364 5.58409 5.69126 5.85171 5.92058 6.26605 6.37802 6.41810 6.57795 6.62532 6.94845 7.07291 7.21804 7.31215 7.40731 7.52610 7.66288 7.96001 8.21739 8.24245 8.45558 8.66800 9.01614 9.49853 9.98125 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.004345 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.004633 B = 6441.982865 C = 7106.019873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.189 4.189 3 C -0.013 4.013 4 C 0.176 3.824 5 H 0.104 0.896 6 C 0.061 3.939 7 O -0.571 6.571 8 N -0.740 5.740 9 C 0.695 3.305 10 O -0.532 6.532 11 N -0.672 5.672 12 C 0.387 3.613 13 C -0.323 4.323 14 C 0.130 3.870 15 C -0.438 4.438 16 H 0.096 0.904 17 C 0.085 3.915 18 N -0.805 5.805 19 Si 0.918 3.082 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.245 1.245 23 C -0.271 4.271 24 C 0.129 3.871 25 N -0.552 5.552 26 H 0.215 0.785 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.378 0.622 32 H 0.394 0.606 33 H 0.404 0.596 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.110 0.890 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 5.476 17.321 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C -0.050 4.050 4 C 0.070 3.930 5 H 0.122 0.878 6 C -0.018 4.018 7 O -0.376 6.376 8 N -0.397 5.397 9 C 0.395 3.605 10 O -0.403 6.403 11 N -0.320 5.320 12 C 0.159 3.841 13 C -0.349 4.349 14 C 0.121 3.879 15 C -0.468 4.468 16 H 0.114 0.886 17 C -0.135 4.135 18 N -0.429 5.429 19 Si 0.745 3.255 20 H -0.198 1.198 21 H -0.220 1.220 22 H -0.168 1.168 23 C -0.295 4.295 24 C -0.023 4.023 25 N -0.271 5.271 26 H 0.232 0.768 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.228 0.772 33 H 0.238 0.762 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.817 4.433 18.183 19.325 hybrid contribution -0.459 1.526 -0.618 1.709 sum 4.358 5.960 17.565 19.054 Atomic orbital electron populations 1.24900 0.95993 1.00533 1.00584 1.22965 0.94422 1.00833 1.00724 1.18919 0.84881 1.01215 1.00019 1.20784 0.92069 0.99184 0.80952 0.87836 1.22714 0.93899 0.84939 1.00223 1.86427 1.25355 1.29751 1.96056 1.45124 1.75776 1.09770 1.09024 1.16042 0.78753 0.85349 0.80404 1.91006 1.53466 1.15550 1.80310 1.42634 1.71358 1.09081 1.08877 1.17757 0.93485 0.87538 0.85343 1.21206 1.19110 0.99329 0.95264 1.17694 0.87637 0.90572 0.91959 1.19507 1.24732 1.09192 0.93418 0.88646 1.26170 0.95018 0.94882 0.97403 1.69613 1.28855 1.20686 1.23787 0.86226 0.77154 0.79903 0.82194 1.19787 1.21952 1.16814 1.21682 1.13194 0.96528 0.98088 1.21631 0.94355 0.96610 0.89685 1.67326 1.26026 0.98393 1.35400 0.76808 0.88268 0.88269 0.92748 0.92238 0.77509 0.77213 0.76165 0.87480 0.90235 0.87218 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 19.25 29.55 0.57 -1.69 16 2 C -0.19 -2.16 13.06 -37.12 -0.48 -2.65 16 3 C -0.01 -0.12 4.97 -29.52 -0.15 -0.27 16 4 C 0.18 2.03 2.34 -67.93 -0.16 1.87 16 5 H 0.10 1.38 7.57 -51.93 -0.39 0.99 16 6 C 0.06 0.61 6.85 37.16 0.25 0.86 16 7 O -0.57 -5.11 12.83 -35.23 -0.45 -5.57 16 8 N -0.74 -10.10 4.73 -58.68 -0.28 -10.38 16 9 C 0.69 12.95 8.49 -86.92 -0.74 12.21 16 10 O -0.53 -11.93 14.26 5.30 0.08 -11.85 16 11 N -0.67 -12.94 5.40 -15.87 -0.09 -13.03 16 12 C 0.39 9.09 7.42 -154.68 -1.15 7.94 16 13 C -0.32 -7.81 6.95 -38.46 -0.27 -8.08 16 14 C 0.13 3.30 5.17 -106.55 -0.55 2.75 16 15 C -0.44 -11.64 9.67 -37.65 -0.36 -12.01 16 16 H 0.10 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.09 2.19 5.48 -17.34 -0.10 2.09 16 18 N -0.80 -20.92 13.92 55.55 0.77 -20.15 16 19 Si 0.92 20.51 24.43 -169.99 -4.15 16.36 16 20 H -0.27 -5.70 6.67 56.52 0.38 -5.33 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.24 -5.77 6.65 56.52 0.38 -5.40 16 23 C -0.27 -6.40 9.85 -39.07 -0.38 -6.78 16 24 C 0.13 2.96 11.10 -18.05 -0.20 2.75 16 25 N -0.55 -13.60 7.86 -12.76 -0.10 -13.70 16 26 H 0.22 1.77 7.80 -54.10 -0.42 1.35 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 0.87 7.73 -51.93 -0.40 0.47 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.38 1.92 9.12 45.56 0.42 2.33 16 32 H 0.39 4.59 8.62 -40.82 -0.35 4.23 16 33 H 0.40 6.39 8.72 -40.82 -0.36 6.03 16 34 H 0.11 2.48 4.43 -52.49 -0.23 2.25 16 35 H 0.29 6.74 8.29 -40.82 -0.34 6.40 16 36 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.13 2.53 8.06 -52.48 -0.42 2.11 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -33.62 325.32 -6.49 -40.11 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -3.46 Total: 14.29 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.71 Total: -0.98 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.31 Total: -57.26 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.38 Total: -17.42 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.15 Total: 16.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.62 -6.49 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.765 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds