Wall clock time and date at job start Tue Mar 31 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47559 * 44.06986 * 3 2 1 5 5 H 1.09002 * 109.47023 * 305.00097 * 4 3 2 6 6 C 1.53001 * 109.47165 * 184.99508 * 4 3 2 7 7 O 1.42890 * 109.47652 * 304.99994 * 6 4 3 8 8 N 1.46501 * 109.46877 * 64.99763 * 4 3 2 9 9 C 1.34780 * 119.99777 * 204.99830 * 8 4 3 10 10 O 1.21569 * 120.00136 * 0.02562 * 9 8 4 11 11 N 1.34776 * 119.99617 * 179.97438 * 9 8 4 12 12 C 1.39460 * 119.99913 * 184.83779 * 11 9 8 13 13 C 1.38639 * 119.65172 * 174.73053 * 12 11 9 14 14 C 1.40826 * 118.67718 * 179.97438 * 13 12 11 15 15 C 1.41545 * 120.99626 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99770 * 149.52151 * 15 14 13 17 17 C 1.40035 * 120.00097 * 329.51524 * 15 14 13 18 18 N 1.30740 * 119.99742 * 167.65574 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 347.65725 * 17 15 14 20 20 H 1.48502 * 109.47101 * 92.44931 * 19 17 15 21 21 H 1.48502 * 109.46995 * 212.44787 * 19 17 15 22 22 H 1.48496 * 109.47233 * 332.44966 * 19 17 15 23 23 C 1.41161 * 118.00281 * 0.02562 * 14 13 12 24 24 C 1.36584 * 119.12701 * 359.97438 * 23 14 13 25 25 N 1.32072 * 121.26352 * 359.74031 * 24 23 14 26 26 H 4.44653 * 5.63436 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47026 * 284.06576 * 3 2 1 28 28 H 1.09000 * 109.46701 * 164.06879 * 3 2 1 29 29 H 1.08999 * 109.46878 * 65.00385 * 6 4 3 30 30 H 1.09001 * 109.46609 * 184.99706 * 6 4 3 31 31 H 0.96691 * 114.00642 * 179.97438 * 7 6 4 32 32 H 0.97003 * 120.00265 * 25.00542 * 8 4 3 33 33 H 0.97003 * 120.00514 * 5.11418 * 11 9 8 34 34 H 1.08001 * 120.66148 * 359.97438 * 13 12 11 35 35 H 0.97007 * 120.00024 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43563 * 180.02562 * 23 14 13 37 37 H 1.08005 * 119.37120 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0355 -1.0033 5 1 2.7224 -2.0085 -0.7734 6 6 4.6814 -1.1234 -0.9142 7 8 5.2453 0.1762 -1.1008 8 7 2.7688 -0.6356 -2.3582 9 6 2.6425 -1.5659 -3.3253 10 8 2.8499 -2.7369 -3.0730 11 7 2.2852 -1.1980 -4.5716 12 6 2.0562 -2.1687 -5.5465 13 6 1.5835 -1.7901 -6.7936 14 6 1.3600 -2.7871 -7.7628 15 6 0.8776 -2.4557 -9.0516 16 1 1.1553 -3.0586 -9.9035 17 6 0.0402 -1.3463 -9.2219 18 7 -0.2104 -0.8948 -10.4230 19 14 -0.7186 -0.5116 -7.7330 20 1 0.1607 0.5985 -7.2862 21 1 -2.0533 0.0293 -8.0955 22 1 -0.8666 -1.4990 -6.6338 23 6 1.6305 -4.1269 -7.4100 24 6 2.0944 -4.4033 -6.1554 25 7 2.2981 -3.4423 -5.2727 26 1 -1.0499 -0.0001 -0.0004 27 1 3.0094 -0.2489 0.9968 28 1 3.0088 0.9890 -0.2821 29 1 4.9666 -1.5060 0.0657 30 1 5.0524 -1.7950 -1.6885 31 1 6.2110 0.1961 -1.0564 32 1 2.6030 0.2987 -2.5595 33 1 2.1913 -0.2580 -4.7918 34 1 1.3905 -0.7513 -7.0174 35 1 -0.7908 -0.1266 -10.5411 36 1 1.4734 -4.9228 -8.1229 37 1 2.3022 -5.4271 -5.8812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871737504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:23 Heat of formation + Delta-G solvation = -9.213676 kcal Electronic energy + Delta-G solvation = -22243.620631 eV Core-core repulsion = 18793.836271 eV Total energy + Delta-G solvation = -3449.784360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.62361 -40.20315 -38.43228 -36.32270 -35.98694 -35.55267 -34.13122 -33.19228 -31.63331 -30.11534 -27.92203 -27.57176 -24.20557 -24.12743 -22.21872 -21.61758 -20.07188 -19.48926 -19.08940 -18.27944 -17.93822 -17.35355 -16.78390 -16.51220 -16.37041 -15.99188 -15.53577 -15.44913 -14.90496 -14.88984 -14.71895 -14.44143 -14.25669 -14.08446 -13.49729 -12.97171 -12.77762 -12.65189 -12.61992 -12.60499 -11.85571 -11.58529 -11.43254 -11.25080 -11.19567 -11.04261 -10.82835 -10.15749 -10.07602 -9.69044 -8.99245 -8.95412 -6.73757 0.60171 0.76094 1.22062 1.37598 1.46009 1.52444 1.85830 1.92017 2.08064 2.19900 2.69895 3.07293 3.39713 3.46221 3.53859 3.91858 4.01794 4.19351 4.37912 4.44268 4.54358 4.59250 4.65573 4.68840 4.75835 4.79863 5.00116 5.12025 5.17204 5.29489 5.52240 5.52261 5.67251 5.83298 6.10711 6.27869 6.51756 6.68418 6.70815 6.89542 6.90788 7.51494 7.75317 8.10375 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.004345 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.004633 B = 6441.982865 C = 7106.019873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.210 4.210 3 C -0.004 4.004 4 C 0.170 3.830 5 H 0.083 0.917 6 C 0.071 3.929 7 O -0.577 6.577 8 N -0.720 5.720 9 C 0.693 3.307 10 O -0.573 6.573 11 N -0.666 5.666 12 C 0.385 3.615 13 C -0.329 4.329 14 C 0.116 3.884 15 C -0.468 4.468 16 H 0.068 0.932 17 C 0.054 3.946 18 N -0.836 5.836 19 Si 0.967 3.033 20 H -0.246 1.246 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.281 4.281 24 C 0.129 3.871 25 N -0.570 5.570 26 H 0.233 0.767 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.396 0.604 32 H 0.407 0.593 33 H 0.420 0.580 34 H 0.117 0.883 35 H 0.298 0.702 36 H 0.122 0.878 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 6.979 19.769 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.210 4.210 3 C -0.040 4.040 4 C 0.065 3.935 5 H 0.101 0.899 6 C -0.008 4.008 7 O -0.385 6.385 8 N -0.377 5.377 9 C 0.393 3.607 10 O -0.447 6.447 11 N -0.315 5.315 12 C 0.155 3.845 13 C -0.355 4.355 14 C 0.107 3.893 15 C -0.499 4.499 16 H 0.086 0.914 17 C -0.163 4.163 18 N -0.462 5.462 19 Si 0.791 3.209 20 H -0.171 1.171 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.305 4.305 24 C -0.022 4.022 25 N -0.290 5.290 26 H 0.250 0.750 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.246 0.754 32 H 0.243 0.757 33 H 0.257 0.743 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.180 6.013 20.648 22.121 hybrid contribution -0.490 1.007 -1.298 1.714 sum 4.690 7.019 19.350 21.112 Atomic orbital electron populations 1.25602 0.97032 1.00348 1.00432 1.23561 0.95418 1.01060 1.00964 1.18959 0.83717 1.00823 1.00519 1.20984 0.93437 0.99087 0.80011 0.89859 1.22502 0.92459 0.84949 1.00871 1.86374 1.27199 1.28862 1.96106 1.45032 1.74262 1.09560 1.08868 1.16191 0.78409 0.85509 0.80631 1.90976 1.55263 1.17516 1.80926 1.42555 1.71074 1.09254 1.08644 1.17955 0.92652 0.87934 0.86001 1.21283 1.19249 0.99547 0.95404 1.17887 0.87715 0.91799 0.91898 1.19498 1.26828 1.10271 0.93312 0.91380 1.26791 0.94840 0.95041 0.99672 1.69625 1.29804 1.21672 1.25119 0.85473 0.77536 0.79271 0.78571 1.17103 1.20389 1.18913 1.21883 1.13369 0.96380 0.98851 1.22115 0.93170 0.97854 0.89090 1.67465 1.26316 0.99158 1.36012 0.75031 0.85602 0.87215 0.89646 0.95210 0.75369 0.75727 0.74287 0.86570 0.89112 0.86003 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.43 19.25 74.32 1.43 -3.00 16 2 C -0.21 -4.33 13.06 31.12 0.41 -3.92 16 3 C 0.00 -0.06 4.97 28.79 0.14 0.09 16 4 C 0.17 3.58 2.34 44.99 0.11 3.69 16 5 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 6 C 0.07 1.25 6.85 71.98 0.49 1.74 16 7 O -0.58 -8.58 12.83 -148.98 -1.91 -10.49 16 8 N -0.72 -18.31 4.73 -457.82 -2.16 -20.47 16 9 C 0.69 24.98 8.49 179.05 1.52 26.50 16 10 O -0.57 -25.38 14.26 -3.93 -0.06 -25.43 16 11 N -0.67 -24.67 5.40 -322.38 -1.74 -26.41 16 12 C 0.38 17.68 7.42 132.76 0.98 18.67 16 13 C -0.33 -15.68 6.95 23.00 0.16 -15.52 16 14 C 0.12 5.91 5.17 -21.11 -0.11 5.80 16 15 C -0.47 -25.56 9.67 23.52 0.23 -25.33 16 16 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 17 C 0.05 2.76 5.48 85.29 0.47 3.23 16 18 N -0.84 -43.87 13.92 21.84 0.30 -43.56 16 19 Si 0.97 41.36 24.43 68.60 1.68 43.03 16 20 H -0.25 -9.44 6.67 99.48 0.66 -8.78 16 21 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.26 -12.13 6.65 99.48 0.66 -11.47 16 23 C -0.28 -13.27 9.85 22.60 0.22 -13.05 16 24 C 0.13 5.83 11.10 84.27 0.94 6.76 16 25 N -0.57 -27.63 7.86 -194.27 -1.53 -29.16 16 26 H 0.23 3.41 7.80 -4.42 -0.03 3.37 16 27 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.11 1.53 7.73 -2.39 -0.02 1.51 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.40 2.80 9.12 -74.06 -0.68 2.13 16 32 H 0.41 8.41 8.62 -92.71 -0.80 7.61 16 33 H 0.42 12.36 8.72 -92.71 -0.81 11.55 16 34 H 0.12 5.22 4.43 -2.91 -0.01 5.20 16 35 H 0.30 13.93 8.29 -92.70 -0.77 13.17 16 36 H 0.12 5.31 8.06 -2.91 -0.02 5.28 16 37 H 0.16 6.01 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -73.00 325.32 0.34 -72.66 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -1.23 Total: 34.17 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.99 Total: 5.66 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -5.13 Total: -119.60 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.97 Total: -35.92 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.68 Total: 43.03 kcal Total: -73.00 0.34 -72.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.447 kcal (2) G-P(sol) polarization free energy of solvation -72.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds