Wall clock time and date at job start Tue Mar 31 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47222 * 94.58275 * 3 2 1 5 5 H 1.08994 * 109.47143 * 54.99009 * 4 3 2 6 6 C 1.52997 * 109.46843 * 174.99678 * 4 3 2 7 7 O 1.42899 * 109.47614 * 54.99721 * 6 4 3 8 8 N 1.46502 * 109.46802 * 294.99551 * 4 3 2 9 9 C 1.34772 * 120.00117 * 155.00401 * 8 4 3 10 10 O 1.21580 * 119.99946 * 359.97438 * 9 8 4 11 11 N 1.34777 * 119.99919 * 179.97438 * 9 8 4 12 12 C 1.39466 * 119.99582 * 175.05874 * 11 9 8 13 13 C 1.38647 * 119.64245 * 174.21890 * 12 11 9 14 14 C 1.40826 * 118.66903 * 179.71896 * 13 12 11 15 15 C 1.41538 * 120.99312 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00344 * 147.47416 * 15 14 13 17 17 C 1.40032 * 120.00277 * 327.47337 * 15 14 13 18 18 N 1.30749 * 119.99828 * 359.81920 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 179.82267 * 17 15 14 20 20 H 1.48498 * 109.47116 * 60.00023 * 19 17 15 21 21 H 1.48500 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46972 * 299.99577 * 19 17 15 23 23 C 1.41160 * 118.00569 * 0.02562 * 14 13 12 24 24 C 1.36594 * 119.13059 * 0.02562 * 23 14 13 25 25 N 1.32061 * 121.25622 * 359.97438 * 24 23 14 26 26 H 4.44654 * 5.63425 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47520 * 334.57284 * 3 2 1 28 28 H 1.09006 * 109.46623 * 214.57407 * 3 2 1 29 29 H 1.09010 * 109.46827 * 174.99885 * 6 4 3 30 30 H 1.08994 * 109.47000 * 294.99195 * 6 4 3 31 31 H 0.96694 * 114.00108 * 180.02562 * 7 6 4 32 32 H 0.97002 * 119.99684 * 334.99668 * 8 4 3 33 33 H 0.96998 * 119.99976 * 355.06156 * 11 9 8 34 34 H 1.07994 * 120.66688 * 359.74394 * 13 12 11 35 35 H 0.96994 * 119.99357 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43546 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.36918 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.1161 -1.4379 5 1 2.7208 0.9980 -1.9080 6 6 4.6807 0.2424 -1.4295 7 8 5.2458 -0.8560 -0.7110 8 7 2.7690 -1.0796 -2.1907 9 6 2.6422 -1.0203 -3.5311 10 8 2.8485 0.0257 -4.1156 11 7 2.2867 -2.1205 -4.2237 12 6 2.0551 -2.0357 -5.5964 13 6 1.8080 -3.1905 -6.3228 14 6 1.5708 -3.0805 -7.7066 15 6 1.3139 -4.2272 -8.4954 16 1 0.6544 -4.1596 -9.3479 17 6 1.9148 -5.4496 -8.1705 18 7 2.7161 -5.5308 -7.1405 19 14 1.5718 -6.9642 -9.2087 20 1 2.0025 -6.7134 -10.6076 21 1 2.3236 -8.1212 -8.6598 22 1 0.1172 -7.2619 -9.1843 23 6 1.5982 -1.7924 -8.2834 24 6 1.8514 -0.7123 -7.4866 25 7 2.0696 -0.8521 -6.1917 26 1 -1.0501 0.0002 0.0000 27 1 3.0098 -0.9272 0.4412 28 1 3.0089 0.8471 0.5832 29 1 5.0514 0.2353 -2.4546 30 1 4.9652 1.1772 -0.9468 31 1 6.2115 -0.8407 -0.6649 32 1 2.6041 -1.9140 -1.7244 33 1 2.1919 -2.9712 -3.7675 34 1 1.7972 -4.1550 -5.8371 35 1 3.1320 -6.3777 -6.9153 36 1 1.4220 -1.6628 -9.3410 37 1 1.8737 0.2750 -7.9240 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871737505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:26 Heat of formation + Delta-G solvation = 13.992549 kcal Electronic energy + Delta-G solvation = -22071.382143 eV Core-core repulsion = 18622.604080 eV Total energy + Delta-G solvation = -3448.778063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.91925 -38.38138 -37.19979 -35.26648 -34.19708 -33.66007 -32.97624 -30.56607 -30.24820 -28.23171 -26.72032 -25.94017 -22.63405 -21.85655 -20.88842 -20.04979 -18.62406 -17.85041 -17.65934 -17.32499 -16.15782 -15.50663 -15.21605 -15.02848 -14.48630 -14.25891 -14.14795 -13.96375 -13.48904 -13.36794 -13.26504 -12.73834 -12.55680 -12.44787 -11.90183 -11.71219 -11.38449 -11.18092 -10.87295 -10.37959 -10.28086 -10.23426 -10.12287 -10.00967 -9.70000 -9.52944 -9.35549 -8.76733 -7.85235 -7.73210 -6.96777 -6.67302 -4.60390 2.72022 2.76812 2.79830 2.85731 3.04042 3.06561 3.07562 3.26893 3.87096 3.90939 4.21120 4.27530 4.58459 4.76193 4.85933 5.12751 5.23192 5.30301 5.50947 5.67846 5.69998 5.86477 5.98456 6.01642 6.56590 6.65419 6.76960 6.81887 7.00247 7.18456 7.34122 7.44897 7.49561 7.53069 7.59599 7.92866 8.15735 8.44509 8.49803 8.76227 8.81164 9.22326 9.73635 10.18930 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.003614 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.431073 B = 7744.975939 C = 7982.985452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.014 4.014 4 C 0.177 3.823 5 H 0.103 0.897 6 C 0.061 3.939 7 O -0.570 6.570 8 N -0.740 5.740 9 C 0.694 3.306 10 O -0.539 6.539 11 N -0.667 5.667 12 C 0.353 3.647 13 C -0.235 4.235 14 C 0.144 3.856 15 C -0.460 4.460 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.804 5.804 19 Si 0.917 3.083 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.278 4.278 24 C 0.115 3.885 25 N -0.548 5.548 26 H 0.215 0.785 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.378 0.622 32 H 0.394 0.606 33 H 0.404 0.596 34 H 0.134 0.866 35 H 0.280 0.720 36 H 0.102 0.898 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 4.497 13.524 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C -0.051 4.051 4 C 0.070 3.930 5 H 0.121 0.879 6 C -0.018 4.018 7 O -0.375 6.375 8 N -0.398 5.398 9 C 0.394 3.606 10 O -0.411 6.411 11 N -0.315 5.315 12 C 0.127 3.873 13 C -0.261 4.261 14 C 0.135 3.865 15 C -0.492 4.492 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.431 5.431 19 Si 0.742 3.258 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.301 4.301 24 C -0.039 4.039 25 N -0.267 5.267 26 H 0.232 0.768 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.224 0.776 32 H 0.227 0.773 33 H 0.239 0.761 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.792 5.947 13.721 15.062 hybrid contribution 0.115 -2.186 -0.616 2.274 sum 1.907 3.761 13.105 13.767 Atomic orbital electron populations 1.24882 0.95969 1.01013 1.00330 1.22973 0.94422 1.00592 1.00759 1.18922 0.84876 1.04607 0.96648 1.20752 0.91971 0.89876 0.90359 0.87917 1.22723 0.94022 0.88671 0.96386 1.86431 1.25280 1.48515 1.77322 1.45110 1.75982 1.13227 1.05458 1.16067 0.78746 0.84671 0.81099 1.90988 1.53987 1.28345 1.67745 1.42548 1.71158 1.10595 1.07178 1.18010 0.96410 0.90892 0.82035 1.21708 1.13442 0.96357 0.94583 1.17590 0.86195 0.91960 0.90742 1.19498 1.25699 0.92504 1.11504 0.90212 1.25908 0.93188 1.00261 0.94916 1.69718 1.22539 1.27241 1.23610 0.86225 0.79476 0.79619 0.80514 1.18989 1.20346 1.18911 1.21759 1.14586 0.94411 0.99377 1.21482 0.96304 0.97285 0.88784 1.67172 1.23581 1.24306 1.11646 0.76828 0.88290 0.88365 0.92279 0.92857 0.77570 0.77285 0.76130 0.84876 0.90924 0.87965 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.35 19.25 29.55 0.57 -1.78 16 2 C -0.19 -2.23 13.06 -37.12 -0.48 -2.72 16 3 C -0.01 -0.13 4.97 -29.52 -0.15 -0.28 16 4 C 0.18 2.20 2.34 -67.93 -0.16 2.04 16 5 H 0.10 1.47 7.57 -51.93 -0.39 1.07 16 6 C 0.06 0.67 6.85 37.16 0.25 0.92 16 7 O -0.57 -5.65 12.83 -35.23 -0.45 -6.10 16 8 N -0.74 -10.83 4.73 -58.68 -0.28 -11.11 16 9 C 0.69 13.77 8.48 -86.92 -0.74 13.04 16 10 O -0.54 -12.80 14.30 5.30 0.08 -12.73 16 11 N -0.67 -13.66 5.40 -15.86 -0.09 -13.74 16 12 C 0.35 8.78 7.40 -154.67 -1.15 7.63 16 13 C -0.24 -6.07 8.60 -38.45 -0.33 -6.40 16 14 C 0.14 3.83 5.57 -106.55 -0.59 3.23 16 15 C -0.46 -11.98 9.12 -37.65 -0.34 -12.33 16 16 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 17 C 0.07 1.82 5.41 -17.34 -0.09 1.73 16 18 N -0.80 -20.24 10.69 55.55 0.59 -19.65 16 19 Si 0.92 18.35 29.56 -169.99 -5.02 13.32 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.28 -6.90 9.85 -39.07 -0.38 -7.29 16 24 C 0.12 2.82 11.10 -18.05 -0.20 2.62 16 25 N -0.55 -14.31 7.90 -12.75 -0.10 -14.41 16 26 H 0.21 1.82 7.80 -54.09 -0.42 1.40 16 27 H 0.10 0.94 7.73 -51.93 -0.40 0.53 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 2.27 9.12 45.56 0.42 2.68 16 32 H 0.39 4.96 8.62 -40.82 -0.35 4.61 16 33 H 0.40 6.91 8.72 -40.82 -0.36 6.55 16 34 H 0.13 3.43 6.25 -52.49 -0.33 3.10 16 35 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 36 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 37 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -33.73 331.21 -7.57 -41.30 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -3.50 Total: 17.72 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.80 Total: 0.41 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.13 Total: -58.91 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.38 Total: -18.83 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.73 -7.57 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.292 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds