Wall clock time and date at job start Tue Mar 31 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47222 * 94.58275 * 3 2 1 5 5 H 1.08994 * 109.47143 * 54.99009 * 4 3 2 6 6 C 1.52997 * 109.46843 * 174.99678 * 4 3 2 7 7 O 1.42899 * 109.47614 * 54.99721 * 6 4 3 8 8 N 1.46502 * 109.46802 * 294.99551 * 4 3 2 9 9 C 1.34772 * 120.00117 * 155.00401 * 8 4 3 10 10 O 1.21580 * 119.99946 * 359.97438 * 9 8 4 11 11 N 1.34777 * 119.99919 * 179.97438 * 9 8 4 12 12 C 1.39466 * 119.99582 * 175.05874 * 11 9 8 13 13 C 1.38647 * 119.64245 * 174.21890 * 12 11 9 14 14 C 1.40826 * 118.66903 * 179.71896 * 13 12 11 15 15 C 1.41538 * 120.99312 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00344 * 147.47416 * 15 14 13 17 17 C 1.40032 * 120.00277 * 327.47337 * 15 14 13 18 18 N 1.30749 * 119.99828 * 359.81920 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 179.82267 * 17 15 14 20 20 H 1.48498 * 109.47116 * 60.00023 * 19 17 15 21 21 H 1.48500 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46972 * 299.99577 * 19 17 15 23 23 C 1.41160 * 118.00569 * 0.02562 * 14 13 12 24 24 C 1.36594 * 119.13059 * 0.02562 * 23 14 13 25 25 N 1.32061 * 121.25622 * 359.97438 * 24 23 14 26 26 H 4.44654 * 5.63425 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47520 * 334.57284 * 3 2 1 28 28 H 1.09006 * 109.46623 * 214.57407 * 3 2 1 29 29 H 1.09010 * 109.46827 * 174.99885 * 6 4 3 30 30 H 1.08994 * 109.47000 * 294.99195 * 6 4 3 31 31 H 0.96694 * 114.00108 * 180.02562 * 7 6 4 32 32 H 0.97002 * 119.99684 * 334.99668 * 8 4 3 33 33 H 0.96998 * 119.99976 * 355.06156 * 11 9 8 34 34 H 1.07994 * 120.66688 * 359.74394 * 13 12 11 35 35 H 0.96994 * 119.99357 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.43546 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.36918 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.1161 -1.4379 5 1 2.7208 0.9980 -1.9080 6 6 4.6807 0.2424 -1.4295 7 8 5.2458 -0.8560 -0.7110 8 7 2.7690 -1.0796 -2.1907 9 6 2.6422 -1.0203 -3.5311 10 8 2.8485 0.0257 -4.1156 11 7 2.2867 -2.1205 -4.2237 12 6 2.0551 -2.0357 -5.5964 13 6 1.8080 -3.1905 -6.3228 14 6 1.5708 -3.0805 -7.7066 15 6 1.3139 -4.2272 -8.4954 16 1 0.6544 -4.1596 -9.3479 17 6 1.9148 -5.4496 -8.1705 18 7 2.7161 -5.5308 -7.1405 19 14 1.5718 -6.9642 -9.2087 20 1 2.0025 -6.7134 -10.6076 21 1 2.3236 -8.1212 -8.6598 22 1 0.1172 -7.2619 -9.1843 23 6 1.5982 -1.7924 -8.2834 24 6 1.8514 -0.7123 -7.4866 25 7 2.0696 -0.8521 -6.1917 26 1 -1.0501 0.0002 0.0000 27 1 3.0098 -0.9272 0.4412 28 1 3.0089 0.8471 0.5832 29 1 5.0514 0.2353 -2.4546 30 1 4.9652 1.1772 -0.9468 31 1 6.2115 -0.8407 -0.6649 32 1 2.6041 -1.9140 -1.7244 33 1 2.1919 -2.9712 -3.7675 34 1 1.7972 -4.1550 -5.8371 35 1 3.1320 -6.3777 -6.9153 36 1 1.4220 -1.6628 -9.3410 37 1 1.8737 0.2750 -7.9240 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871737505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:25 Heat of formation + Delta-G solvation = -10.657768 kcal Electronic energy + Delta-G solvation = -22072.451061 eV Core-core repulsion = 18622.604080 eV Total energy + Delta-G solvation = -3449.846981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49067 -40.02549 -38.39139 -36.29027 -35.95158 -35.45863 -34.08782 -32.41732 -31.52801 -29.92254 -27.89136 -27.57127 -24.16220 -23.74864 -22.27314 -21.56814 -19.88474 -19.43523 -18.99720 -18.27165 -17.70456 -17.08973 -16.68888 -16.36019 -16.05639 -15.96147 -15.46381 -15.33189 -14.82514 -14.75008 -14.34779 -14.25046 -14.23629 -14.03519 -13.20545 -12.94524 -12.84079 -12.67612 -12.61491 -12.11347 -11.89311 -11.50568 -11.34211 -11.23929 -11.17803 -11.03816 -10.83224 -10.07059 -9.82637 -9.65129 -8.82424 -8.53401 -6.58178 0.82671 1.02694 1.42097 1.53590 1.57246 1.63218 1.87118 1.93534 2.22423 2.28668 2.87346 3.16556 3.40060 3.47515 3.74242 3.94048 4.15645 4.19825 4.38589 4.53450 4.68862 4.70423 4.80262 4.84799 4.91974 5.02059 5.11332 5.18246 5.27070 5.49575 5.56047 5.66469 5.84678 6.01381 6.28166 6.57207 6.72265 6.80621 6.86097 6.90068 6.98456 7.61554 7.88185 8.35037 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.003614 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.431073 B = 7744.975939 C = 7982.985452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.211 4.211 3 C -0.003 4.003 4 C 0.170 3.830 5 H 0.082 0.918 6 C 0.071 3.929 7 O -0.577 6.577 8 N -0.720 5.720 9 C 0.692 3.308 10 O -0.580 6.580 11 N -0.662 5.662 12 C 0.351 3.649 13 C -0.252 4.252 14 C 0.115 3.885 15 C -0.489 4.489 16 H 0.084 0.916 17 C 0.034 3.966 18 N -0.828 5.828 19 Si 0.992 3.008 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.289 4.289 24 C 0.110 3.890 25 N -0.573 5.573 26 H 0.235 0.765 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.396 0.604 32 H 0.406 0.594 33 H 0.418 0.582 34 H 0.128 0.872 35 H 0.289 0.711 36 H 0.118 0.882 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 3.740 14.502 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.211 4.211 3 C -0.039 4.039 4 C 0.065 3.935 5 H 0.100 0.900 6 C -0.008 4.008 7 O -0.385 6.385 8 N -0.377 5.377 9 C 0.392 3.608 10 O -0.455 6.455 11 N -0.311 5.311 12 C 0.123 3.877 13 C -0.278 4.278 14 C 0.107 3.893 15 C -0.521 4.521 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.455 5.455 19 Si 0.812 3.188 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.182 1.182 23 C -0.313 4.313 24 C -0.043 4.043 25 N -0.292 5.292 26 H 0.251 0.749 27 H 0.127 0.873 28 H 0.144 0.856 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.246 0.754 32 H 0.242 0.758 33 H 0.255 0.745 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.076 5.182 14.776 15.795 hybrid contribution 0.062 -1.918 -0.835 2.093 sum 2.139 3.264 13.940 14.476 Atomic orbital electron populations 1.25612 0.97019 1.00838 0.99826 1.23553 0.95416 1.00902 1.01220 1.18947 0.83820 1.06318 0.94862 1.20967 0.93326 0.87935 0.91298 0.89995 1.22512 0.92615 0.90502 0.95193 1.86379 1.27138 1.48216 1.76761 1.45005 1.74467 1.14701 1.03571 1.16226 0.78383 0.83738 0.82447 1.90952 1.55842 1.29706 1.69049 1.42464 1.70950 1.11746 1.05951 1.18207 0.95457 0.90403 0.83640 1.21671 1.14986 0.96404 0.94711 1.18024 0.86762 0.93082 0.91464 1.19811 1.26682 0.93488 1.12082 0.89820 1.26810 0.92347 1.02875 0.96006 1.69778 1.22575 1.28495 1.24646 0.85097 0.79589 0.75513 0.78554 1.18646 1.19240 1.18214 1.21947 1.14980 0.94075 1.00284 1.21948 0.95316 0.98507 0.88538 1.67299 1.24622 1.24853 1.12450 0.74889 0.87276 0.85563 0.95539 0.89518 0.75409 0.75848 0.74509 0.85421 0.90068 0.86394 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.70 19.25 74.32 1.43 -3.27 16 2 C -0.21 -4.71 13.06 31.12 0.41 -4.30 16 3 C 0.00 -0.05 4.97 28.79 0.14 0.09 16 4 C 0.17 4.04 2.34 44.99 0.11 4.15 16 5 H 0.08 2.33 7.57 -2.39 -0.02 2.31 16 6 C 0.07 1.44 6.85 71.98 0.49 1.93 16 7 O -0.58 -10.10 12.83 -148.98 -1.91 -12.01 16 8 N -0.72 -20.66 4.73 -457.83 -2.16 -22.82 16 9 C 0.69 27.71 8.48 179.06 1.52 29.22 16 10 O -0.58 -28.14 14.30 -3.97 -0.06 -28.20 16 11 N -0.66 -27.47 5.40 -322.36 -1.74 -29.21 16 12 C 0.35 17.80 7.40 132.76 0.98 18.78 16 13 C -0.25 -13.32 8.60 23.00 0.20 -13.13 16 14 C 0.12 6.26 5.57 -21.12 -0.12 6.14 16 15 C -0.49 -25.72 9.12 23.52 0.21 -25.51 16 16 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 17 C 0.03 1.67 5.41 85.29 0.46 2.14 16 18 N -0.83 -41.71 10.69 21.84 0.23 -41.47 16 19 Si 0.99 36.83 29.56 68.60 2.03 38.85 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 23 C -0.29 -14.57 9.85 22.60 0.22 -14.34 16 24 C 0.11 5.44 11.10 84.27 0.94 6.37 16 25 N -0.57 -30.40 7.90 -194.26 -1.53 -31.93 16 26 H 0.23 3.66 7.80 -4.41 -0.03 3.62 16 27 H 0.11 1.75 7.73 -2.39 -0.02 1.73 16 28 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.40 3.79 9.12 -74.06 -0.68 3.11 16 32 H 0.41 9.74 8.62 -92.71 -0.80 8.94 16 33 H 0.42 14.38 8.72 -92.71 -0.81 13.58 16 34 H 0.13 6.76 6.25 -2.91 -0.02 6.74 16 35 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 36 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 37 H 0.15 6.31 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -73.69 331.21 0.70 -72.99 By element: Atomic # 1 Polarization: 46.67 SS G_CDS: -1.15 Total: 45.52 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.99 Total: 8.28 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -5.20 Total: -125.43 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.97 Total: -40.20 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.85 kcal Total: -73.69 0.70 -72.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871737505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.328 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds