Wall clock time and date at job start Tue Mar 31 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48497 * 109.46871 * 239.99768 * 3 2 1 5 5 H 1.48498 * 109.47465 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46912 * 119.99990 * 3 2 1 7 7 C 1.37878 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99973 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99792 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00322 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99549 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99829 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.42005 * 325.11165 * 14 13 11 16 16 C 1.52895 * 109.37347 * 205.26659 * 14 13 11 17 17 C 1.50716 * 109.66760 * 288.21445 * 16 14 13 18 18 C 1.38144 * 119.94728 * 147.57618 * 17 16 14 19 19 C 1.38265 * 120.07358 * 178.38905 * 18 17 16 20 20 C 1.38304 * 120.11481 * 359.88159 * 19 18 17 21 21 C 1.38090 * 120.05642 * 0.37052 * 20 19 18 22 22 C 1.38821 * 120.08617 * 326.68749 * 17 16 14 23 23 N 1.39755 * 120.10239 * 1.45636 * 22 17 16 24 24 C 1.34409 * 120.77581 * 14.25685 * 23 22 17 25 25 O 1.21285 * 119.68788 * 185.57293 * 24 23 22 26 26 H 0.97001 * 119.99805 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47368 * 59.99292 * 9 7 2 28 28 H 1.09004 * 109.46917 * 299.99502 * 9 7 2 29 29 H 0.96996 * 120.00219 * 359.97438 * 10 9 7 30 30 H 0.96996 * 120.00462 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.43508 * 48.26514 * 16 14 13 32 32 H 1.08999 * 109.43423 * 168.17303 * 16 14 13 33 33 H 1.08001 * 119.96265 * 358.65930 * 18 17 16 34 34 H 1.08004 * 119.94208 * 179.85839 * 19 18 17 35 35 H 1.07993 * 119.97545 * 180.34879 * 20 19 18 36 36 H 1.07999 * 120.00214 * 180.19305 * 21 20 19 37 37 H 0.96996 * 119.61069 * 194.23176 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5583 -5.1056 0.0006 13 7 2.6295 -5.9077 0.0021 14 6 2.1412 -7.2890 0.0012 15 1 1.2247 -7.3498 0.5882 16 6 3.2013 -8.2021 0.6177 17 6 4.3617 -8.3463 -0.3333 18 6 5.6417 -8.5088 0.1603 19 6 6.7037 -8.6747 -0.7093 20 6 6.4876 -8.6809 -2.0754 21 6 5.2109 -8.5137 -2.5744 22 6 4.1436 -8.3345 -1.7042 23 7 2.8515 -8.1585 -2.2069 24 6 1.8589 -7.7195 -1.4140 25 8 0.7253 -7.6701 -1.8422 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 3.1566 -3.4354 0.0021 30 1 3.5832 -5.7305 0.0024 31 1 3.5520 -7.7696 1.5547 32 1 2.7670 -9.1830 0.8110 33 1 5.8124 -8.5107 1.2267 34 1 7.7039 -8.7993 -0.3212 35 1 7.3180 -8.8163 -2.7524 36 1 5.0427 -8.5218 -3.6411 37 1 2.6690 -8.3550 -3.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:43 Heat of formation + Delta-G solvation = -41.372455 kcal Electronic energy + Delta-G solvation = -22342.589479 eV Core-core repulsion = 18891.410609 eV Total energy + Delta-G solvation = -3451.178870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34474 -39.19176 -38.59733 -35.68046 -35.00661 -34.05970 -32.64560 -32.07098 -29.92607 -29.14422 -26.92721 -24.56907 -23.10238 -22.93667 -22.51507 -20.37345 -19.37792 -18.26793 -18.14853 -17.10775 -16.58962 -15.99392 -15.68601 -15.37675 -14.99859 -14.62400 -14.40385 -14.39272 -13.93377 -13.87847 -13.68940 -13.13827 -12.78465 -12.70742 -12.35165 -11.93503 -11.85707 -11.56592 -11.25602 -10.95911 -10.90135 -10.86873 -10.37177 -10.28680 -9.43827 -9.36887 -9.15711 -8.87849 -8.69420 -8.23553 -7.78500 -6.13011 -4.19945 0.92525 1.01447 2.33109 2.85988 3.27153 3.29265 3.32633 3.36507 3.54204 3.85875 4.24201 4.32929 4.34669 4.45245 4.59199 4.75591 4.99792 5.04778 5.11901 5.18361 5.22817 5.26322 5.58004 5.58722 5.67913 5.84754 6.07737 6.21524 6.46322 6.60372 6.65914 6.98643 7.07568 7.50628 7.53895 7.59214 7.87503 7.93725 8.04241 8.76323 8.91561 9.31062 9.48329 10.97180 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.003707 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.825585 B = 7550.900561 C = 8260.280741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.725 5.725 11 C 0.689 3.311 12 O -0.583 6.583 13 N -0.742 5.742 14 C 0.158 3.842 15 H 0.127 0.873 16 C -0.088 4.088 17 C -0.131 4.131 18 C -0.079 4.079 19 C -0.147 4.147 20 C -0.087 4.087 21 C -0.158 4.158 22 C 0.172 3.828 23 N -0.664 5.664 24 C 0.507 3.493 25 O -0.496 6.496 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.386 0.614 30 H 0.396 0.604 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.028 -20.082 -0.878 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.388 3.612 12 O -0.460 6.460 13 N -0.402 5.402 14 C 0.048 3.952 15 H 0.145 0.855 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.097 4.097 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.178 4.178 22 C 0.076 3.924 23 N -0.309 5.309 24 C 0.292 3.708 25 O -0.366 6.366 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.218 0.782 30 H 0.230 0.770 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.942 -19.992 -0.918 24.390 hybrid contribution 1.391 1.018 -0.621 1.832 sum 15.333 -18.974 -1.539 24.443 Atomic orbital electron populations 1.69973 1.06093 1.27388 1.48762 1.24944 0.94908 0.99376 0.94765 0.86466 0.79390 0.82345 0.78629 1.20128 1.21068 1.20077 1.21176 0.93205 0.90413 1.53333 0.92003 1.19006 0.87734 0.80925 0.97724 1.45710 1.10843 1.04184 1.77021 1.16217 0.85250 0.81133 0.78558 1.90942 1.13814 1.83805 1.57457 1.45086 1.09226 1.03444 1.82474 1.20762 1.00343 0.82338 0.91783 0.85486 1.20866 0.92807 1.00502 0.98370 1.19481 0.95778 1.06355 0.91741 1.20877 0.91014 0.97780 1.00066 1.21086 0.99111 1.03056 0.93330 1.20964 0.96066 0.97904 0.95604 1.20771 0.91882 1.05981 0.99206 1.17650 0.84386 0.97935 0.92462 1.43723 1.07750 1.65045 1.14380 1.21432 0.84189 0.75926 0.89299 1.90820 1.20854 1.49890 1.75022 0.92388 0.95704 0.95595 0.78159 0.76956 0.88093 0.88382 0.85262 0.85767 0.85594 0.85535 0.75496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.30 5.43 -5.20 -0.03 7.27 16 10 N -0.73 -15.82 5.55 -66.42 -0.37 -16.19 16 11 C 0.69 14.60 8.52 -86.92 -0.74 13.86 16 12 O -0.58 -15.17 16.00 5.29 0.08 -15.08 16 13 N -0.74 -11.23 5.02 -59.92 -0.30 -11.53 16 14 C 0.16 2.14 2.72 -69.19 -0.19 1.96 16 15 H 0.13 1.94 7.57 -51.93 -0.39 1.55 16 16 C -0.09 -0.77 5.52 -27.93 -0.15 -0.92 16 17 C -0.13 -1.14 5.27 -104.43 -0.55 -1.69 16 18 C -0.08 -0.56 9.68 -39.61 -0.38 -0.94 16 19 C -0.15 -0.98 10.04 -39.55 -0.40 -1.38 16 20 C -0.09 -0.60 10.04 -39.61 -0.40 -1.00 16 21 C -0.16 -1.27 9.90 -39.40 -0.39 -1.66 16 22 C 0.17 1.68 6.53 -83.80 -0.55 1.13 16 23 N -0.66 -7.67 5.35 -10.03 -0.05 -7.72 16 24 C 0.51 7.74 7.25 -11.20 -0.08 7.66 16 25 O -0.50 -9.92 17.92 5.55 0.10 -9.82 16 26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 30 H 0.40 4.86 8.29 -40.82 -0.34 4.52 16 31 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.41 4.12 8.80 -40.82 -0.36 3.76 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -36.60 323.26 -8.57 -45.18 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.34 Total: 9.33 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: -4.28 Total: 10.72 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.01 Total: -61.21 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.18 Total: -24.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.60 -8.57 -45.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.803 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds