Wall clock time and date at job start Tue Mar 31 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48497 * 109.46871 * 239.99768 * 3 2 1 5 5 H 1.48498 * 109.47465 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46912 * 119.99990 * 3 2 1 7 7 C 1.37878 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99973 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46965 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99792 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00322 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99549 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99829 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.42005 * 325.11165 * 14 13 11 16 16 C 1.52895 * 109.37347 * 205.26659 * 14 13 11 17 17 C 1.50716 * 109.66760 * 288.21445 * 16 14 13 18 18 C 1.38144 * 119.94728 * 147.57618 * 17 16 14 19 19 C 1.38265 * 120.07358 * 178.38905 * 18 17 16 20 20 C 1.38304 * 120.11481 * 359.88159 * 19 18 17 21 21 C 1.38090 * 120.05642 * 0.37052 * 20 19 18 22 22 C 1.38821 * 120.08617 * 326.68749 * 17 16 14 23 23 N 1.39755 * 120.10239 * 1.45636 * 22 17 16 24 24 C 1.34409 * 120.77581 * 14.25685 * 23 22 17 25 25 O 1.21285 * 119.68788 * 185.57293 * 24 23 22 26 26 H 0.97001 * 119.99805 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47368 * 59.99292 * 9 7 2 28 28 H 1.09004 * 109.46917 * 299.99502 * 9 7 2 29 29 H 0.96996 * 120.00219 * 359.97438 * 10 9 7 30 30 H 0.96996 * 120.00462 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.43508 * 48.26514 * 16 14 13 32 32 H 1.08999 * 109.43423 * 168.17303 * 16 14 13 33 33 H 1.08001 * 119.96265 * 358.65930 * 18 17 16 34 34 H 1.08004 * 119.94208 * 179.85839 * 19 18 17 35 35 H 1.07993 * 119.97545 * 180.34879 * 20 19 18 36 36 H 1.07999 * 120.00214 * 180.19305 * 21 20 19 37 37 H 0.96996 * 119.61069 * 194.23176 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5583 -5.1056 0.0006 13 7 2.6295 -5.9077 0.0021 14 6 2.1412 -7.2890 0.0012 15 1 1.2247 -7.3498 0.5882 16 6 3.2013 -8.2021 0.6177 17 6 4.3617 -8.3463 -0.3333 18 6 5.6417 -8.5088 0.1603 19 6 6.7037 -8.6747 -0.7093 20 6 6.4876 -8.6809 -2.0754 21 6 5.2109 -8.5137 -2.5744 22 6 4.1436 -8.3345 -1.7042 23 7 2.8515 -8.1585 -2.2069 24 6 1.8589 -7.7195 -1.4140 25 8 0.7253 -7.6701 -1.8422 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 3.1566 -3.4354 0.0021 30 1 3.5832 -5.7305 0.0024 31 1 3.5520 -7.7696 1.5547 32 1 2.7670 -9.1830 0.8110 33 1 5.8124 -8.5107 1.2267 34 1 7.7039 -8.7993 -0.3212 35 1 7.3180 -8.8163 -2.7524 36 1 5.0427 -8.5218 -3.6411 37 1 2.6690 -8.3550 -3.1390 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:43 Heat of formation + Delta-G solvation = -70.596015 kcal Electronic energy + Delta-G solvation = -22343.856707 eV Core-core repulsion = 18891.410609 eV Total energy + Delta-G solvation = -3452.446098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.35443 -40.68404 -39.67631 -36.87392 -36.19255 -35.87144 -34.44402 -33.34557 -30.67870 -30.22205 -28.81213 -25.59835 -24.66336 -23.83443 -23.53051 -22.11590 -20.34804 -19.94912 -19.00583 -18.27267 -18.04543 -17.68546 -16.81011 -16.58511 -16.38056 -16.02275 -15.76360 -15.38665 -15.22718 -14.98006 -14.69438 -14.47197 -14.04182 -14.03170 -13.64569 -13.49053 -13.18603 -12.90287 -12.67627 -12.23468 -12.16507 -11.99406 -11.79323 -11.59310 -11.50718 -11.32290 -10.79665 -10.38168 -9.74712 -9.68040 -8.98734 -8.27920 -6.45214 0.20310 0.44546 1.18118 1.43990 1.48699 1.56920 1.86599 1.95147 2.21432 2.40107 2.88911 3.06882 3.26560 3.45718 3.53591 3.64406 3.95159 4.17319 4.36907 4.49581 4.52297 4.64778 4.70932 4.95218 5.04982 5.10877 5.20648 5.24813 5.27095 5.46248 5.50560 5.61834 5.67380 5.71150 5.83210 5.90288 6.13543 6.18019 6.65921 6.85194 7.19531 7.25721 7.64001 8.84404 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.003707 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.825585 B = 7550.900561 C = 8260.280741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.286 3.714 10 N -0.717 5.717 11 C 0.688 3.312 12 O -0.636 6.636 13 N -0.714 5.714 14 C 0.154 3.846 15 H 0.104 0.896 16 C -0.075 4.075 17 C -0.137 4.137 18 C -0.078 4.078 19 C -0.140 4.140 20 C -0.090 4.090 21 C -0.159 4.159 22 C 0.139 3.861 23 N -0.652 5.652 24 C 0.502 3.498 25 O -0.560 6.560 26 H 0.269 0.731 27 H -0.020 1.020 28 H -0.011 1.011 29 H 0.406 0.594 30 H 0.415 0.585 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.639 -20.384 -0.228 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.162 3.838 10 N -0.371 5.371 11 C 0.388 3.612 12 O -0.516 6.516 13 N -0.374 5.374 14 C 0.045 3.955 15 H 0.122 0.878 16 C -0.112 4.112 17 C -0.139 4.139 18 C -0.096 4.096 19 C -0.159 4.159 20 C -0.109 4.109 21 C -0.180 4.180 22 C 0.044 3.956 23 N -0.295 5.295 24 C 0.288 3.712 25 O -0.436 6.436 26 H 0.078 0.922 27 H -0.002 1.002 28 H 0.006 0.994 29 H 0.241 0.759 30 H 0.253 0.747 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 18.713 -20.364 -0.267 27.658 hybrid contribution 0.077 0.958 -0.852 1.285 sum 18.790 -19.406 -1.119 27.035 Atomic orbital electron populations 1.70153 1.08397 1.28676 1.49832 1.26104 0.95769 1.03990 0.93789 0.85157 0.77842 0.76339 0.79550 1.18736 1.21158 1.18343 1.21558 0.94353 0.90284 1.53116 0.89603 1.18429 0.88092 0.83344 0.93904 1.45260 1.10988 1.03502 1.77376 1.16386 0.85128 0.81779 0.77916 1.90913 1.16596 1.84634 1.59506 1.44718 1.09266 1.02868 1.80573 1.20919 1.01499 0.81938 0.91171 0.87775 1.20868 0.91364 1.00123 0.98858 1.19576 0.96470 1.06747 0.91149 1.21168 0.90039 0.96809 1.01577 1.21486 1.00222 1.01043 0.93151 1.21308 0.96045 0.97047 0.96456 1.20993 0.92006 1.05286 0.99697 1.17932 0.83566 1.00624 0.93507 1.43548 1.08059 1.63712 1.14218 1.21679 0.83930 0.75537 0.90070 1.90787 1.23396 1.53139 1.76234 0.92230 1.00199 0.99352 0.75856 0.74699 0.85573 0.86564 0.82726 0.83238 0.83331 0.84597 0.74980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.60 29.54 68.60 2.03 44.63 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.56 -30.71 9.28 25.60 0.24 -30.47 16 8 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.29 16.33 5.43 85.63 0.46 16.79 16 10 N -0.72 -31.87 5.55 -482.30 -2.68 -34.55 16 11 C 0.69 30.10 8.52 179.05 1.53 31.63 16 12 O -0.64 -35.12 16.00 -3.97 -0.06 -35.18 16 13 N -0.71 -21.39 5.02 -461.74 -2.32 -23.70 16 14 C 0.15 4.22 2.72 44.17 0.12 4.34 16 15 H 0.10 3.37 7.57 -2.38 -0.02 3.35 16 16 C -0.08 -1.14 5.52 29.82 0.16 -0.97 16 17 C -0.14 -2.00 5.27 -19.74 -0.10 -2.11 16 18 C -0.08 -0.76 9.68 22.25 0.22 -0.54 16 19 C -0.14 -1.22 10.04 22.29 0.22 -1.00 16 20 C -0.09 -0.90 10.04 22.25 0.22 -0.68 16 21 C -0.16 -2.18 9.90 22.39 0.22 -1.96 16 22 C 0.14 2.46 6.53 38.17 0.25 2.70 16 23 N -0.65 -15.07 5.35 -304.25 -1.63 -16.70 16 24 C 0.50 15.95 7.25 87.68 0.64 16.59 16 25 O -0.56 -24.09 17.92 -3.05 -0.05 -24.14 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 28 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 29 H 0.41 14.61 8.34 -92.71 -0.77 13.84 16 30 H 0.42 9.36 8.29 -92.71 -0.77 8.59 16 31 H 0.13 1.33 8.07 -2.39 -0.02 1.31 16 32 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 34 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.41 8.56 8.80 -92.71 -0.82 7.75 16 Total: -1.00 -85.54 323.26 -1.01 -86.55 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -1.22 Total: 25.28 kcal Atomic # 6 Polarization: 30.32 SS G_CDS: 4.64 Total: 34.96 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -6.34 Total: -132.10 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -0.12 Total: -59.32 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -85.54 -1.01 -86.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.952 kcal (2) G-P(sol) polarization free energy of solvation -85.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds