Wall clock time and date at job start Tue Mar 31 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47504 * 33.17506 * 3 2 1 5 5 H 1.09001 * 109.46959 * 304.99947 * 4 3 2 6 6 C 1.52995 * 109.47149 * 185.00021 * 4 3 2 7 7 O 1.42894 * 109.47259 * 304.99641 * 6 4 3 8 8 N 1.46500 * 109.47143 * 64.99689 * 4 3 2 9 9 C 1.34775 * 119.99749 * 205.00105 * 8 4 3 10 10 O 1.21574 * 120.00467 * 0.02562 * 9 8 4 11 11 N 1.34781 * 119.99941 * 180.02562 * 9 8 4 12 12 C 1.39250 * 119.99934 * 184.96044 * 11 9 8 13 13 C 1.39686 * 119.57158 * 174.68017 * 12 11 9 14 14 C 1.38643 * 119.49371 * 179.97438 * 13 12 11 15 15 C 1.38353 * 118.66895 * 359.97438 * 14 13 12 16 16 C 1.40572 * 119.13686 * 0.02562 * 15 14 13 17 17 C 1.41325 * 119.79108 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00440 * 5.23594 * 17 16 15 19 19 C 1.40029 * 120.00171 * 185.23909 * 17 16 15 20 20 N 1.30750 * 119.99609 * 354.77446 * 19 17 16 21 21 Si 1.86794 * 120.00294 * 174.77342 * 19 17 16 22 22 H 1.48503 * 109.47392 * 94.99622 * 21 19 17 23 23 H 1.48504 * 109.47303 * 215.00025 * 21 19 17 24 24 H 1.48499 * 109.47203 * 334.99616 * 21 19 17 25 25 N 1.31900 * 119.57596 * 354.40045 * 12 11 9 26 26 H 4.44648 * 5.63320 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47195 * 273.16977 * 3 2 1 28 28 H 1.09003 * 109.46901 * 153.17872 * 3 2 1 29 29 H 1.09000 * 109.47496 * 64.99864 * 6 4 3 30 30 H 1.09005 * 109.47432 * 184.99682 * 6 4 3 31 31 H 0.96700 * 114.00013 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00002 * 25.00611 * 8 4 3 33 33 H 0.97001 * 119.99534 * 5.22969 * 11 9 8 34 34 H 1.07994 * 120.25383 * 359.94982 * 13 12 11 35 35 H 1.07995 * 120.66703 * 180.02562 * 14 13 12 36 36 H 1.08007 * 120.43095 * 179.97438 * 15 14 13 37 37 H 0.97005 * 119.99573 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.2064 -0.7893 5 1 2.7225 -2.1184 -0.3796 6 6 4.6815 -1.2760 -0.6850 7 8 5.2453 -0.0350 -1.1138 8 7 2.7690 -1.0699 -2.1955 9 6 2.6428 -2.1662 -2.9691 10 8 2.8501 -3.2685 -2.5000 11 7 2.2866 -2.0406 -4.2629 12 6 2.0555 -3.1763 -5.0349 13 6 1.5794 -3.0371 -6.3407 14 6 1.3504 -4.1689 -7.1080 15 6 1.6032 -5.4102 -6.5518 16 6 2.0816 -5.4843 -5.2320 17 6 2.3450 -6.7451 -4.6504 18 1 2.2600 -7.6426 -5.2451 19 6 2.7161 -6.8307 -3.3029 20 7 2.9184 -5.7405 -2.6100 21 14 2.9220 -8.5024 -2.4952 22 1 4.3505 -8.9048 -2.5472 23 1 2.4805 -8.4259 -1.0794 24 1 2.0986 -9.5056 -3.2168 25 7 2.2943 -4.3693 -4.5255 26 1 -1.0498 -0.0002 -0.0004 27 1 3.0094 -0.0560 1.0261 28 1 3.0089 0.9180 -0.4637 29 1 4.9666 -1.4664 0.3496 30 1 5.0526 -2.0818 -1.3183 31 1 6.2111 -0.0072 -1.0739 32 1 2.6033 -0.1905 -2.5697 33 1 2.1951 -1.1592 -4.6574 34 1 1.3908 -2.0554 -6.7493 35 1 0.9828 -4.0833 -8.1198 36 1 1.4344 -6.3107 -7.1238 37 1 3.1759 -5.7999 -1.6766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:28 Heat of formation + Delta-G solvation = 37.509470 kcal Electronic energy + Delta-G solvation = -22776.324629 eV Core-core repulsion = 19328.566337 eV Total energy + Delta-G solvation = -3447.758293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.58853 -38.09616 -36.92806 -35.09342 -33.96322 -32.93010 -32.76276 -30.35350 -30.09807 -28.54812 -26.57980 -25.45058 -22.59491 -21.35432 -20.74342 -19.74538 -18.43793 -17.91620 -17.29000 -16.96555 -16.18807 -15.42709 -14.94844 -14.60452 -14.38529 -14.20956 -13.90768 -13.66501 -13.34035 -13.10533 -12.99046 -12.71231 -12.21487 -11.86791 -11.66496 -11.52046 -11.13259 -10.90355 -10.60481 -10.42698 -10.24462 -10.13765 -9.90324 -9.86135 -9.60941 -9.04367 -8.97131 -8.39969 -7.89816 -7.15358 -6.87779 -6.07026 -4.33882 2.88127 2.88710 2.90600 3.17279 3.19618 3.22468 3.31351 3.31749 4.10370 4.19928 4.39140 4.42103 4.80718 4.99461 5.03104 5.31124 5.38978 5.45921 5.66106 5.87433 6.06626 6.10467 6.11854 6.17197 6.53599 6.67884 6.86125 6.90265 7.06059 7.29084 7.43699 7.61680 7.67744 7.70080 7.81767 7.86940 8.23002 8.35936 8.73693 8.86244 9.11585 9.67068 10.32643 10.54339 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.005541 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.531771 B = 5052.481566 C = 6055.343344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C -0.014 4.014 4 C 0.180 3.820 5 H 0.103 0.897 6 C 0.062 3.938 7 O -0.572 6.572 8 N -0.746 5.746 9 C 0.666 3.334 10 O -0.467 6.467 11 N -0.673 5.673 12 C 0.388 3.612 13 C -0.358 4.358 14 C -0.036 4.036 15 C -0.307 4.307 16 C 0.272 3.728 17 C -0.427 4.427 18 H 0.081 0.919 19 C 0.057 3.943 20 N -0.648 5.648 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.263 1.263 25 N -0.471 5.471 26 H 0.214 0.786 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.375 0.625 32 H 0.386 0.614 33 H 0.394 0.606 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 11.464 6.259 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.183 4.183 3 C -0.051 4.051 4 C 0.074 3.926 5 H 0.121 0.879 6 C -0.017 4.017 7 O -0.377 6.377 8 N -0.405 5.405 9 C 0.364 3.636 10 O -0.331 6.331 11 N -0.321 5.321 12 C 0.148 3.852 13 C -0.384 4.384 14 C -0.060 4.060 15 C -0.331 4.331 16 C 0.146 3.854 17 C -0.457 4.457 18 H 0.100 0.900 19 C -0.172 4.172 20 N -0.267 5.267 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.187 1.187 25 N -0.189 5.189 26 H 0.231 0.769 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.222 0.778 32 H 0.219 0.781 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.866 10.501 7.769 13.196 hybrid contribution -0.011 0.160 -0.848 0.863 sum 1.854 10.661 6.921 12.845 Atomic orbital electron populations 1.24836 0.95941 1.00782 1.01091 1.23000 0.94440 1.00525 1.00343 1.18933 0.84790 0.99886 1.01451 1.20658 0.91691 0.98669 0.81605 0.87933 1.22742 0.94263 0.86398 0.98339 1.86420 1.25077 1.36256 1.89931 1.45198 1.76872 1.08173 1.10262 1.16438 0.80466 0.85103 0.81598 1.91373 1.49365 1.21425 1.70958 1.42558 1.72072 1.07771 1.09714 1.18352 0.92618 0.87475 0.86768 1.20450 1.24067 0.97531 0.96373 1.20537 0.96011 0.92637 0.96822 1.21620 1.16481 0.95947 0.99010 1.18392 0.87978 0.91523 0.87460 1.19554 1.38913 0.92286 0.94992 0.90046 1.26186 0.95584 0.97314 0.98136 1.70374 1.22171 1.26541 1.07603 0.86550 0.79109 0.83562 0.79030 1.19821 1.20355 1.18730 1.68698 1.21763 0.94591 1.33893 0.76947 0.88599 0.88521 0.93181 0.92017 0.77828 0.78123 0.77264 0.89194 0.88681 0.88642 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.64 19.25 29.55 0.57 -2.07 16 2 C -0.18 -2.39 13.06 -37.12 -0.48 -2.88 16 3 C -0.01 -0.15 4.97 -29.52 -0.15 -0.30 16 4 C 0.18 2.51 2.34 -67.94 -0.16 2.35 16 5 H 0.10 1.68 7.57 -51.93 -0.39 1.29 16 6 C 0.06 0.77 6.85 37.15 0.25 1.02 16 7 O -0.57 -6.27 12.83 -35.23 -0.45 -6.72 16 8 N -0.75 -11.69 4.73 -58.68 -0.28 -11.97 16 9 C 0.67 13.98 8.49 -86.92 -0.74 13.24 16 10 O -0.47 -11.91 11.77 5.30 0.06 -11.84 16 11 N -0.67 -13.90 5.39 -15.79 -0.09 -13.98 16 12 C 0.39 9.75 7.43 -154.99 -1.15 8.60 16 13 C -0.36 -8.28 9.96 -38.89 -0.39 -8.67 16 14 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 15 C -0.31 -7.91 9.83 -38.66 -0.38 -8.29 16 16 C 0.27 7.79 6.55 -85.00 -0.56 7.23 16 17 C -0.43 -11.95 9.13 -37.74 -0.34 -12.29 16 18 H 0.08 2.14 7.85 -52.48 -0.41 1.72 16 19 C 0.06 1.53 5.49 -17.34 -0.10 1.43 16 20 N -0.65 -18.16 9.01 55.55 0.50 -17.66 16 21 Si 0.89 19.48 29.56 -169.99 -5.03 14.45 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 25 N -0.47 -13.51 5.75 -10.26 -0.06 -13.57 16 26 H 0.21 2.04 7.80 -54.10 -0.42 1.61 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 1.01 7.73 -51.93 -0.40 0.61 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.38 2.65 9.12 45.56 0.42 3.07 16 32 H 0.39 5.17 8.62 -40.82 -0.35 4.82 16 33 H 0.39 6.44 8.72 -40.82 -0.36 6.09 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 37 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -34.80 328.14 -8.00 -42.80 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -3.59 Total: 15.42 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -4.02 Total: -1.86 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.08 Total: -57.18 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.39 Total: -18.57 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.80 -8.00 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.313 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds