Wall clock time and date at job start Tue Mar 31 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47504 * 33.17506 * 3 2 1 5 5 H 1.09001 * 109.46959 * 304.99947 * 4 3 2 6 6 C 1.52995 * 109.47149 * 185.00021 * 4 3 2 7 7 O 1.42894 * 109.47259 * 304.99641 * 6 4 3 8 8 N 1.46500 * 109.47143 * 64.99689 * 4 3 2 9 9 C 1.34775 * 119.99749 * 205.00105 * 8 4 3 10 10 O 1.21574 * 120.00467 * 0.02562 * 9 8 4 11 11 N 1.34781 * 119.99941 * 180.02562 * 9 8 4 12 12 C 1.39250 * 119.99934 * 184.96044 * 11 9 8 13 13 C 1.39686 * 119.57158 * 174.68017 * 12 11 9 14 14 C 1.38643 * 119.49371 * 179.97438 * 13 12 11 15 15 C 1.38353 * 118.66895 * 359.97438 * 14 13 12 16 16 C 1.40572 * 119.13686 * 0.02562 * 15 14 13 17 17 C 1.41325 * 119.79108 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00440 * 5.23594 * 17 16 15 19 19 C 1.40029 * 120.00171 * 185.23909 * 17 16 15 20 20 N 1.30750 * 119.99609 * 354.77446 * 19 17 16 21 21 Si 1.86794 * 120.00294 * 174.77342 * 19 17 16 22 22 H 1.48503 * 109.47392 * 94.99622 * 21 19 17 23 23 H 1.48504 * 109.47303 * 215.00025 * 21 19 17 24 24 H 1.48499 * 109.47203 * 334.99616 * 21 19 17 25 25 N 1.31900 * 119.57596 * 354.40045 * 12 11 9 26 26 H 4.44648 * 5.63320 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47195 * 273.16977 * 3 2 1 28 28 H 1.09003 * 109.46901 * 153.17872 * 3 2 1 29 29 H 1.09000 * 109.47496 * 64.99864 * 6 4 3 30 30 H 1.09005 * 109.47432 * 184.99682 * 6 4 3 31 31 H 0.96700 * 114.00013 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00002 * 25.00611 * 8 4 3 33 33 H 0.97001 * 119.99534 * 5.22969 * 11 9 8 34 34 H 1.07994 * 120.25383 * 359.94982 * 13 12 11 35 35 H 1.07995 * 120.66703 * 180.02562 * 14 13 12 36 36 H 1.08007 * 120.43095 * 179.97438 * 15 14 13 37 37 H 0.97005 * 119.99573 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.2064 -0.7893 5 1 2.7225 -2.1184 -0.3796 6 6 4.6815 -1.2760 -0.6850 7 8 5.2453 -0.0350 -1.1138 8 7 2.7690 -1.0699 -2.1955 9 6 2.6428 -2.1662 -2.9691 10 8 2.8501 -3.2685 -2.5000 11 7 2.2866 -2.0406 -4.2629 12 6 2.0555 -3.1763 -5.0349 13 6 1.5794 -3.0371 -6.3407 14 6 1.3504 -4.1689 -7.1080 15 6 1.6032 -5.4102 -6.5518 16 6 2.0816 -5.4843 -5.2320 17 6 2.3450 -6.7451 -4.6504 18 1 2.2600 -7.6426 -5.2451 19 6 2.7161 -6.8307 -3.3029 20 7 2.9184 -5.7405 -2.6100 21 14 2.9220 -8.5024 -2.4952 22 1 4.3505 -8.9048 -2.5472 23 1 2.4805 -8.4259 -1.0794 24 1 2.0986 -9.5056 -3.2168 25 7 2.2943 -4.3693 -4.5255 26 1 -1.0498 -0.0002 -0.0004 27 1 3.0094 -0.0560 1.0261 28 1 3.0089 0.9180 -0.4637 29 1 4.9666 -1.4664 0.3496 30 1 5.0526 -2.0818 -1.3183 31 1 6.2111 -0.0072 -1.0739 32 1 2.6033 -0.1905 -2.5697 33 1 2.1951 -1.1592 -4.6574 34 1 1.3908 -2.0554 -6.7493 35 1 0.9828 -4.0833 -8.1198 36 1 1.4344 -6.3107 -7.1238 37 1 3.1759 -5.7999 -1.6766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:28 Heat of formation + Delta-G solvation = 11.782196 kcal Electronic energy + Delta-G solvation = -22777.440248 eV Core-core repulsion = 19328.566337 eV Total energy + Delta-G solvation = -3448.873911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19443 -39.74625 -38.24721 -36.19742 -35.75645 -34.80120 -33.97228 -32.20003 -31.55735 -30.25241 -27.59262 -27.36477 -24.25122 -23.19433 -22.20762 -21.29486 -19.87412 -19.35103 -18.57649 -18.27431 -17.88925 -16.79651 -16.39403 -16.25947 -16.11314 -15.62178 -15.29755 -15.27427 -14.69516 -14.55773 -14.23177 -14.09143 -13.98341 -13.63136 -12.96927 -12.81659 -12.70187 -12.57431 -12.53224 -12.29909 -11.76694 -11.47577 -11.21198 -11.12559 -10.87313 -10.83105 -10.74519 -9.89069 -9.78629 -9.08637 -8.76051 -8.00969 -6.38928 0.98389 1.29925 1.40009 1.51437 1.55427 1.81069 1.89011 1.95532 2.28011 2.59115 3.05331 3.36318 3.45401 3.50432 3.99532 4.08686 4.25298 4.37322 4.42129 4.55617 4.72214 4.74534 4.83401 4.88533 4.98164 5.06810 5.08071 5.19601 5.30709 5.68616 5.76272 5.87620 5.94299 6.06010 6.33205 6.44551 6.73559 6.84263 6.90707 7.09527 7.27937 8.04669 8.40096 8.60446 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.005541 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.531771 B = 5052.481566 C = 6055.343344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.208 4.208 3 C -0.002 4.002 4 C 0.176 3.824 5 H 0.072 0.928 6 C 0.075 3.925 7 O -0.574 6.574 8 N -0.726 5.726 9 C 0.659 3.341 10 O -0.514 6.514 11 N -0.663 5.663 12 C 0.365 3.635 13 C -0.348 4.348 14 C -0.033 4.033 15 C -0.331 4.331 16 C 0.237 3.763 17 C -0.467 4.467 18 H 0.085 0.915 19 C 0.010 3.990 20 N -0.683 5.683 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.256 1.256 25 N -0.505 5.505 26 H 0.234 0.766 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.023 0.977 31 H 0.395 0.605 32 H 0.401 0.599 33 H 0.415 0.585 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 13.019 6.325 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.208 4.208 3 C -0.038 4.038 4 C 0.070 3.930 5 H 0.090 0.910 6 C -0.005 4.005 7 O -0.382 6.382 8 N -0.385 5.385 9 C 0.357 3.643 10 O -0.382 6.382 11 N -0.314 5.314 12 C 0.125 3.875 13 C -0.374 4.374 14 C -0.057 4.057 15 C -0.354 4.354 16 C 0.111 3.889 17 C -0.498 4.498 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.302 5.302 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.180 1.180 25 N -0.225 5.225 26 H 0.251 0.749 27 H 0.139 0.861 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.244 0.756 32 H 0.236 0.764 33 H 0.252 0.748 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.825 12.153 7.823 14.568 hybrid contribution -0.024 -0.127 -0.958 0.967 sum 1.801 12.025 6.865 13.963 Atomic orbital electron populations 1.25577 0.96988 1.00275 1.00725 1.23560 0.95417 1.01010 1.00796 1.18931 0.83819 0.98691 1.02381 1.20772 0.92858 0.98878 0.80491 0.90992 1.22450 0.93019 0.85838 0.99163 1.86363 1.26975 1.34915 1.89948 1.44989 1.75579 1.07377 1.10554 1.16708 0.80090 0.85639 0.81831 1.91364 1.51350 1.23672 1.71833 1.42431 1.71620 1.07696 1.09621 1.18852 0.92655 0.87766 0.88188 1.20916 1.21652 0.99433 0.95366 1.21009 0.94564 0.91584 0.98567 1.21805 1.17485 0.97675 0.98457 1.18888 0.88855 0.92143 0.88965 1.19879 1.41060 0.92589 0.96256 0.89717 1.27039 0.94802 1.01491 0.98250 1.70574 1.23187 1.28847 1.07583 0.85346 0.79264 0.78272 0.77737 1.19029 1.19882 1.18012 1.68661 1.22915 0.95734 1.35150 0.74899 0.86070 0.87130 0.90272 0.95887 0.75601 0.76427 0.74837 0.85239 0.84514 0.87785 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.25 19.25 74.32 1.43 -3.82 16 2 C -0.21 -5.16 13.06 31.13 0.41 -4.75 16 3 C 0.00 -0.03 4.97 28.79 0.14 0.11 16 4 C 0.18 4.82 2.34 44.99 0.11 4.92 16 5 H 0.07 2.45 7.57 -2.39 -0.02 2.43 16 6 C 0.07 1.80 6.85 71.98 0.49 2.29 16 7 O -0.57 -11.37 12.83 -148.98 -1.91 -13.28 16 8 N -0.73 -22.45 4.73 -457.84 -2.16 -24.61 16 9 C 0.66 28.12 8.49 179.05 1.52 29.64 16 10 O -0.51 -27.40 11.77 -3.95 -0.05 -27.44 16 11 N -0.66 -27.16 5.39 -322.12 -1.74 -28.90 16 12 C 0.37 18.39 7.43 133.26 0.99 19.38 16 13 C -0.35 -15.39 9.96 22.72 0.23 -15.17 16 14 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 15 C -0.33 -17.16 9.83 22.87 0.22 -16.94 16 16 C 0.24 14.04 6.55 40.19 0.26 14.31 16 17 C -0.47 -27.19 9.13 23.46 0.21 -26.97 16 18 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 19 C 0.01 0.55 5.49 85.29 0.47 1.02 16 20 N -0.68 -40.04 9.01 21.84 0.20 -39.84 16 21 Si 0.97 41.35 29.56 68.60 2.03 43.38 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 N -0.51 -29.89 5.75 -186.37 -1.07 -30.96 16 26 H 0.23 4.13 7.80 -4.43 -0.03 4.09 16 27 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.11 1.99 7.73 -2.39 -0.02 1.97 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.39 4.66 9.12 -74.06 -0.68 3.98 16 32 H 0.40 10.10 8.62 -92.71 -0.80 9.30 16 33 H 0.41 12.85 8.72 -92.71 -0.81 12.04 16 34 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.27 14.81 8.29 -92.70 -0.77 14.04 16 Total: -1.00 -79.26 328.14 0.85 -78.41 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -1.15 Total: 40.47 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.71 Total: 2.78 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -4.78 Total: -124.31 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.96 Total: -40.72 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -79.26 0.85 -78.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.189 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds