Wall clock time and date at job start Tue Mar 31 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47147 * 294.21112 * 3 2 1 5 5 H 1.09006 * 109.47065 * 55.00133 * 4 3 2 6 6 C 1.52997 * 109.47297 * 175.00078 * 4 3 2 7 7 O 1.42904 * 109.47126 * 55.00245 * 6 4 3 8 8 N 1.46504 * 109.47242 * 295.00513 * 4 3 2 9 9 C 1.34778 * 119.99754 * 154.99920 * 8 4 3 10 10 O 1.21575 * 120.00108 * 359.97438 * 9 8 4 11 11 N 1.34780 * 119.99820 * 179.97438 * 9 8 4 12 12 C 1.39240 * 119.99933 * 185.78817 * 11 9 8 13 13 C 1.39684 * 119.57882 * 18.76112 * 12 11 9 14 14 C 1.38646 * 119.49834 * 180.02562 * 13 12 11 15 15 C 1.38357 * 118.66902 * 359.97438 * 14 13 12 16 16 C 1.40574 * 119.13357 * 0.02562 * 15 14 13 17 17 C 1.41326 * 119.78807 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00205 * 8.92754 * 17 16 15 19 19 C 1.40030 * 119.99834 * 188.92094 * 17 16 15 20 20 N 1.30744 * 119.99922 * 196.05781 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 16.06713 * 19 17 16 22 22 H 1.48500 * 109.47234 * 269.99585 * 21 19 17 23 23 H 1.48501 * 109.47298 * 29.99499 * 21 19 17 24 24 H 1.48497 * 109.47441 * 149.99607 * 21 19 17 25 25 N 1.31912 * 119.57331 * 199.03646 * 12 11 9 26 26 H 4.44648 * 5.63228 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.47136 * 174.21600 * 3 2 1 28 28 H 1.09001 * 109.47497 * 54.21030 * 3 2 1 29 29 H 1.09003 * 109.47445 * 175.00255 * 6 4 3 30 30 H 1.08995 * 109.47382 * 295.00241 * 6 4 3 31 31 H 0.96703 * 113.99908 * 179.97438 * 7 6 4 32 32 H 0.96993 * 119.99827 * 334.99109 * 8 4 3 33 33 H 0.97006 * 119.99774 * 5.78688 * 11 9 8 34 34 H 1.07996 * 120.25248 * 0.02590 * 13 12 11 35 35 H 1.07998 * 120.66274 * 179.97438 * 14 13 12 36 36 H 1.07998 * 120.43474 * 180.02562 * 15 14 13 37 37 H 0.97003 * 120.00130 * 354.94141 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.5907 1.3156 5 1 2.7221 -1.5798 1.4620 6 6 4.6811 -0.7054 1.2658 7 8 5.2450 0.5711 0.9582 8 7 2.7682 0.2822 2.4264 9 6 2.6416 -0.2244 3.6690 10 8 2.8490 -1.4057 3.8679 11 7 2.2851 0.5787 4.6910 12 6 2.2712 0.0845 5.9926 13 6 2.9818 -1.0793 6.2959 14 6 2.9663 -1.5702 7.5924 15 6 2.2423 -0.8862 8.5526 16 6 1.5479 0.2794 8.1848 17 6 0.8035 0.9887 9.1544 18 1 0.8834 0.7221 10.1979 19 6 -0.0377 2.0372 8.7620 20 7 -0.4782 2.8893 9.6505 21 14 -0.5306 2.2183 6.9694 22 1 0.4565 3.0788 6.2691 23 1 -0.5637 0.8797 6.3274 24 1 -1.8764 2.8405 6.8865 25 7 1.5828 0.7183 6.9223 26 1 -1.0499 0.0001 0.0002 27 1 3.0089 1.0232 -0.1036 28 1 3.0097 -0.6002 -0.8336 29 1 5.0520 -1.0428 2.2337 30 1 4.9665 -1.4234 0.4970 31 1 6.2109 0.5733 0.9107 32 1 2.6025 1.2246 2.2676 33 1 2.0383 1.5011 4.5197 34 1 3.5389 -1.5927 5.5263 35 1 3.5086 -2.4686 7.8476 36 1 2.2110 -1.2430 9.5715 37 1 -0.2831 2.7538 10.5910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:31 Heat of formation + Delta-G solvation = 3.887196 kcal Electronic energy + Delta-G solvation = -22369.500015 eV Core-core repulsion = 18920.283751 eV Total energy + Delta-G solvation = -3449.216264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.40600 -38.60757 -37.47211 -35.46547 -34.44984 -33.57378 -33.13021 -31.02670 -30.62862 -28.98285 -26.86863 -25.28728 -23.07008 -21.72152 -21.10885 -20.31786 -18.86360 -18.36297 -17.90788 -17.48989 -16.87489 -15.71421 -15.59140 -15.00678 -14.88147 -14.45657 -14.35328 -13.94528 -13.63846 -13.54782 -13.42443 -12.95756 -12.58934 -12.19529 -12.09396 -11.90055 -11.80269 -11.18429 -10.85758 -10.49437 -10.34695 -10.28702 -10.13486 -9.94884 -9.72914 -9.34356 -9.08537 -9.01819 -8.46172 -7.86679 -7.33380 -7.23020 -4.71564 2.43836 2.66348 2.68391 2.72785 2.79430 3.43003 3.49992 3.66191 3.92581 4.04646 4.16715 4.32197 4.36550 4.64579 4.70659 4.96652 5.08611 5.17248 5.37328 5.51550 5.59100 5.74056 5.88904 5.90766 6.14753 6.38725 6.48792 6.59535 6.72776 6.96518 7.22777 7.36137 7.38890 7.48147 7.50919 7.67205 7.81780 7.97104 8.25174 8.38022 8.68041 8.80113 9.49680 10.01094 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004653 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.970126 B = 6016.079715 C = 6918.559391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.193 4.193 3 C -0.013 4.013 4 C 0.174 3.826 5 H 0.105 0.895 6 C 0.061 3.939 7 O -0.570 6.570 8 N -0.733 5.733 9 C 0.711 3.289 10 O -0.568 6.568 11 N -0.666 5.666 12 C 0.401 3.599 13 C -0.310 4.310 14 C -0.036 4.036 15 C -0.281 4.281 16 C 0.276 3.724 17 C -0.484 4.484 18 H 0.083 0.917 19 C 0.050 3.950 20 N -0.806 5.806 21 Si 1.143 2.857 22 H -0.288 1.288 23 H -0.280 1.280 24 H -0.327 1.327 25 N -0.597 5.597 26 H 0.216 0.784 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.379 0.621 32 H 0.399 0.601 33 H 0.403 0.597 34 H 0.140 0.860 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -3.484 -18.491 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C -0.050 4.050 4 C 0.069 3.931 5 H 0.123 0.877 6 C -0.018 4.018 7 O -0.375 6.375 8 N -0.389 5.389 9 C 0.411 3.589 10 O -0.445 6.445 11 N -0.313 5.313 12 C 0.169 3.831 13 C -0.335 4.335 14 C -0.061 4.061 15 C -0.304 4.304 16 C 0.152 3.848 17 C -0.516 4.516 18 H 0.102 0.898 19 C -0.172 4.172 20 N -0.428 5.428 21 Si 0.977 3.023 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.260 1.260 25 N -0.322 5.322 26 H 0.233 0.767 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.226 0.774 32 H 0.233 0.767 33 H 0.238 0.762 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.734 -2.689 -19.438 20.443 hybrid contribution 1.508 -0.967 1.464 2.314 sum 7.242 -3.656 -17.974 19.720 Atomic orbital electron populations 1.24933 0.96017 1.00593 1.00076 1.22944 0.94404 1.00929 1.01034 1.18912 0.84942 1.03911 0.97252 1.20853 0.92252 0.95590 0.84444 0.87666 1.22705 0.93708 0.85197 1.00166 1.86440 1.25434 1.31609 1.94054 1.45044 1.74895 1.12726 1.06195 1.15706 0.78101 0.84909 0.80138 1.90835 1.56862 1.14306 1.82472 1.42316 1.69341 1.14741 1.04903 1.17792 0.91606 0.91142 0.82537 1.21528 1.12057 1.01805 0.98088 1.20908 0.95376 0.97005 0.92765 1.21589 1.09143 1.00405 0.99244 1.18162 0.90369 0.89218 0.87026 1.20645 1.21496 1.14613 0.94808 0.89849 1.27629 0.91019 0.89634 1.08878 1.70617 1.37187 1.30284 1.04680 0.82130 0.72620 0.76546 0.71045 1.21587 1.20731 1.25999 1.66133 1.26491 1.36873 1.02710 0.76735 0.88159 0.88164 0.92241 0.92605 0.77406 0.76672 0.76210 0.84239 0.87759 0.87795 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.19 -2.10 13.06 -37.12 -0.48 -2.58 16 3 C -0.01 -0.11 4.97 -29.52 -0.15 -0.26 16 4 C 0.17 1.85 2.34 -67.93 -0.16 1.69 16 5 H 0.11 1.27 7.57 -51.93 -0.39 0.87 16 6 C 0.06 0.55 6.85 37.16 0.25 0.80 16 7 O -0.57 -4.73 12.83 -35.23 -0.45 -5.18 16 8 N -0.73 -9.43 4.73 -58.67 -0.28 -9.71 16 9 C 0.71 12.48 8.37 -86.91 -0.73 11.75 16 10 O -0.57 -11.53 12.80 5.30 0.07 -11.46 16 11 N -0.67 -12.90 5.42 -15.78 -0.09 -12.99 16 12 C 0.40 9.50 7.51 -154.99 -1.16 8.33 16 13 C -0.31 -7.19 8.83 -38.89 -0.34 -7.54 16 14 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 15 C -0.28 -6.89 9.83 -38.66 -0.38 -7.27 16 16 C 0.28 7.42 6.27 -85.00 -0.53 6.89 16 17 C -0.48 -13.39 9.51 -37.74 -0.36 -13.75 16 18 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 19 C 0.05 1.38 5.51 -17.34 -0.10 1.28 16 20 N -0.81 -22.11 13.65 55.55 0.76 -21.35 16 21 Si 1.14 28.18 25.93 -169.99 -4.41 23.77 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -7.13 6.55 56.52 0.37 -6.76 16 24 H -0.33 -7.91 7.11 56.52 0.40 -7.51 16 25 N -0.60 -15.50 5.06 -10.26 -0.05 -15.55 16 26 H 0.22 1.70 7.80 -54.10 -0.42 1.28 16 27 H 0.10 0.82 7.73 -51.93 -0.40 0.42 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 1.69 9.12 45.56 0.42 2.11 16 32 H 0.40 4.45 8.62 -40.82 -0.35 4.10 16 33 H 0.40 6.92 8.84 -40.82 -0.36 6.56 16 34 H 0.14 3.17 5.33 -52.51 -0.28 2.89 16 35 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.28 7.45 8.73 -40.82 -0.36 7.10 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -33.51 325.96 -7.02 -40.53 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.51 Total: 10.44 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.97 Total: -3.42 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.34 Total: -59.60 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.38 Total: -16.64 kcal Atomic # 14 Polarization: 28.18 SS G_CDS: -4.41 Total: 23.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.51 -7.02 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.417 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds