Wall clock time and date at job start Tue Mar 31 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47147 * 294.21112 * 3 2 1 5 5 H 1.09006 * 109.47065 * 55.00133 * 4 3 2 6 6 C 1.52997 * 109.47297 * 175.00078 * 4 3 2 7 7 O 1.42904 * 109.47126 * 55.00245 * 6 4 3 8 8 N 1.46504 * 109.47242 * 295.00513 * 4 3 2 9 9 C 1.34778 * 119.99754 * 154.99920 * 8 4 3 10 10 O 1.21575 * 120.00108 * 359.97438 * 9 8 4 11 11 N 1.34780 * 119.99820 * 179.97438 * 9 8 4 12 12 C 1.39240 * 119.99933 * 185.78817 * 11 9 8 13 13 C 1.39684 * 119.57882 * 18.76112 * 12 11 9 14 14 C 1.38646 * 119.49834 * 180.02562 * 13 12 11 15 15 C 1.38357 * 118.66902 * 359.97438 * 14 13 12 16 16 C 1.40574 * 119.13357 * 0.02562 * 15 14 13 17 17 C 1.41326 * 119.78807 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00205 * 8.92754 * 17 16 15 19 19 C 1.40030 * 119.99834 * 188.92094 * 17 16 15 20 20 N 1.30744 * 119.99922 * 196.05781 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 16.06713 * 19 17 16 22 22 H 1.48500 * 109.47234 * 269.99585 * 21 19 17 23 23 H 1.48501 * 109.47298 * 29.99499 * 21 19 17 24 24 H 1.48497 * 109.47441 * 149.99607 * 21 19 17 25 25 N 1.31912 * 119.57331 * 199.03646 * 12 11 9 26 26 H 4.44648 * 5.63228 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.47136 * 174.21600 * 3 2 1 28 28 H 1.09001 * 109.47497 * 54.21030 * 3 2 1 29 29 H 1.09003 * 109.47445 * 175.00255 * 6 4 3 30 30 H 1.08995 * 109.47382 * 295.00241 * 6 4 3 31 31 H 0.96703 * 113.99908 * 179.97438 * 7 6 4 32 32 H 0.96993 * 119.99827 * 334.99109 * 8 4 3 33 33 H 0.97006 * 119.99774 * 5.78688 * 11 9 8 34 34 H 1.07996 * 120.25248 * 0.02590 * 13 12 11 35 35 H 1.07998 * 120.66274 * 179.97438 * 14 13 12 36 36 H 1.07998 * 120.43474 * 180.02562 * 15 14 13 37 37 H 0.97003 * 120.00130 * 354.94141 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.5907 1.3156 5 1 2.7221 -1.5798 1.4620 6 6 4.6811 -0.7054 1.2658 7 8 5.2450 0.5711 0.9582 8 7 2.7682 0.2822 2.4264 9 6 2.6416 -0.2244 3.6690 10 8 2.8490 -1.4057 3.8679 11 7 2.2851 0.5787 4.6910 12 6 2.2712 0.0845 5.9926 13 6 2.9818 -1.0793 6.2959 14 6 2.9663 -1.5702 7.5924 15 6 2.2423 -0.8862 8.5526 16 6 1.5479 0.2794 8.1848 17 6 0.8035 0.9887 9.1544 18 1 0.8834 0.7221 10.1979 19 6 -0.0377 2.0372 8.7620 20 7 -0.4782 2.8893 9.6505 21 14 -0.5306 2.2183 6.9694 22 1 0.4565 3.0788 6.2691 23 1 -0.5637 0.8797 6.3274 24 1 -1.8764 2.8405 6.8865 25 7 1.5828 0.7183 6.9223 26 1 -1.0499 0.0001 0.0002 27 1 3.0089 1.0232 -0.1036 28 1 3.0097 -0.6002 -0.8336 29 1 5.0520 -1.0428 2.2337 30 1 4.9665 -1.4234 0.4970 31 1 6.2109 0.5733 0.9107 32 1 2.6025 1.2246 2.2676 33 1 2.0383 1.5011 4.5197 34 1 3.5389 -1.5927 5.5263 35 1 3.5086 -2.4686 7.8476 36 1 2.2110 -1.2430 9.5715 37 1 -0.2831 2.7538 10.5910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:30 Heat of formation + Delta-G solvation = -20.847000 kcal Electronic energy + Delta-G solvation = -22370.572570 eV Core-core repulsion = 18920.283751 eV Total energy + Delta-G solvation = -3450.288819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85986 -40.21390 -38.51767 -36.37741 -36.06592 -35.37772 -34.18910 -32.93027 -31.83263 -30.54150 -27.58310 -27.23512 -24.52775 -23.56652 -22.31275 -21.73159 -20.54872 -19.65144 -19.16382 -18.43737 -18.15784 -17.04543 -16.84486 -16.74658 -16.31715 -15.84076 -15.62039 -15.35406 -14.93430 -14.87647 -14.40300 -14.30508 -14.22986 -14.04716 -13.71999 -13.02635 -12.95824 -12.77426 -12.58759 -12.17915 -11.86083 -11.59463 -11.25058 -11.16418 -11.04822 -10.91537 -10.79209 -10.36959 -10.19664 -9.83213 -9.30895 -9.14134 -6.78161 0.60771 0.80067 1.38896 1.51900 1.64721 1.87088 1.93287 1.96450 2.02851 2.39732 2.65366 3.02324 3.40662 3.47176 3.60181 3.94074 4.09850 4.19578 4.37906 4.43383 4.55008 4.66801 4.67476 4.72812 4.79826 4.84860 5.01009 5.18758 5.36039 5.39692 5.44699 5.47444 5.68811 5.80242 5.94341 6.06331 6.43393 6.63149 6.72396 6.84594 6.93014 7.38359 7.56710 7.94170 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004653 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.970126 B = 6016.079715 C = 6918.559391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.211 4.211 3 C -0.005 4.005 4 C 0.168 3.832 5 H 0.090 0.910 6 C 0.070 3.930 7 O -0.579 6.579 8 N -0.714 5.714 9 C 0.711 3.289 10 O -0.596 6.596 11 N -0.665 5.665 12 C 0.392 3.608 13 C -0.307 4.307 14 C -0.029 4.029 15 C -0.297 4.297 16 C 0.260 3.740 17 C -0.514 4.514 18 H 0.070 0.930 19 C 0.024 3.976 20 N -0.826 5.826 21 Si 1.175 2.825 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.321 1.321 25 N -0.610 5.610 26 H 0.232 0.768 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.397 0.603 32 H 0.410 0.590 33 H 0.413 0.587 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.114 0.886 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -3.986 -21.157 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.211 4.211 3 C -0.041 4.041 4 C 0.063 3.937 5 H 0.108 0.892 6 C -0.009 4.009 7 O -0.387 6.387 8 N -0.369 5.369 9 C 0.411 3.589 10 O -0.475 6.475 11 N -0.313 5.313 12 C 0.159 3.841 13 C -0.331 4.331 14 C -0.053 4.053 15 C -0.319 4.319 16 C 0.135 3.865 17 C -0.547 4.547 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.449 5.449 21 Si 1.006 2.994 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.253 1.253 25 N -0.336 5.336 26 H 0.249 0.751 27 H 0.127 0.873 28 H 0.146 0.854 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.247 0.753 32 H 0.246 0.754 33 H 0.249 0.751 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.064 -3.155 -22.163 23.475 hybrid contribution 1.237 -0.945 2.137 2.644 sum 8.301 -4.100 -20.026 22.063 Atomic orbital electron populations 1.25616 0.97062 1.00668 0.99984 1.23562 0.95420 1.00974 1.01174 1.18975 0.83656 1.04769 0.96721 1.21092 0.93723 0.94568 0.84307 0.89172 1.22530 0.92153 0.86170 1.00040 1.86390 1.27243 1.31186 1.93908 1.45028 1.73279 1.13592 1.05023 1.15826 0.77824 0.84369 0.80896 1.90795 1.58138 1.15485 1.83092 1.42287 1.69604 1.15477 1.03920 1.18111 0.90998 0.91301 0.83709 1.21867 1.11191 1.01427 0.98626 1.21316 0.94363 0.97706 0.91923 1.21764 1.09574 1.00132 1.00415 1.18359 0.90669 0.90012 0.87499 1.20651 1.23341 1.16123 0.94595 0.91216 1.28354 0.90837 0.89471 1.10728 1.70634 1.38583 1.30930 1.04773 0.81707 0.72992 0.75933 0.68808 1.20075 1.22227 1.25320 1.66112 1.27123 1.37528 1.02821 0.75105 0.87285 0.85432 0.94656 0.89477 0.75318 0.75433 0.75067 0.83303 0.83930 0.86768 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.27 19.25 74.32 1.43 -2.84 16 2 C -0.21 -4.13 13.06 31.12 0.41 -3.73 16 3 C 0.00 -0.06 4.97 28.79 0.14 0.08 16 4 C 0.17 3.15 2.34 44.99 0.11 3.25 16 5 H 0.09 2.01 7.57 -2.38 -0.02 2.00 16 6 C 0.07 1.05 6.85 71.98 0.49 1.55 16 7 O -0.58 -7.72 12.83 -148.98 -1.91 -9.63 16 8 N -0.71 -16.89 4.73 -457.81 -2.16 -19.05 16 9 C 0.71 23.77 8.37 179.05 1.50 25.27 16 10 O -0.60 -23.32 12.80 -3.95 -0.05 -23.37 16 11 N -0.67 -24.78 5.42 -322.12 -1.75 -26.53 16 12 C 0.39 18.07 7.51 133.26 1.00 19.07 16 13 C -0.31 -13.68 8.83 22.72 0.20 -13.48 16 14 C -0.03 -1.24 10.15 22.40 0.23 -1.01 16 15 C -0.30 -14.31 9.83 22.87 0.22 -14.09 16 16 C 0.26 14.01 6.27 40.19 0.25 14.26 16 17 C -0.51 -29.19 9.51 23.46 0.22 -28.96 16 18 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 19 C 0.02 1.32 5.51 85.29 0.47 1.79 16 20 N -0.83 -46.20 13.65 21.84 0.30 -45.90 16 21 Si 1.17 57.21 25.93 68.60 1.78 58.99 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.29 -14.87 6.55 99.48 0.65 -14.22 16 24 H -0.32 -15.10 7.11 99.48 0.71 -14.39 16 25 N -0.61 -31.39 5.06 -186.37 -0.94 -32.33 16 26 H 0.23 3.31 7.80 -4.42 -0.03 3.28 16 27 H 0.11 1.41 7.73 -2.39 -0.02 1.39 16 28 H 0.13 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.40 2.25 9.12 -74.06 -0.68 1.57 16 32 H 0.41 8.14 8.62 -92.71 -0.80 7.34 16 33 H 0.41 13.51 8.84 -92.70 -0.82 12.69 16 34 H 0.15 6.45 5.33 -3.18 -0.02 6.43 16 35 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 37 H 0.28 15.28 8.73 -92.71 -0.81 14.48 16 Total: -1.00 -71.92 325.96 0.68 -71.24 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -1.26 Total: 25.40 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 6.68 Total: 1.18 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -4.56 Total: -123.81 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.96 Total: -33.00 kcal Atomic # 14 Polarization: 57.21 SS G_CDS: 1.78 Total: 58.99 kcal Total: -71.92 0.68 -71.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.394 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds