Wall clock time and date at job start Tue Mar 31 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86796 * 120.00601 * 2 1 4 4 H 1.48506 * 109.46846 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47468 * 119.99577 * 3 2 1 6 6 H 1.48498 * 109.47423 * 239.99770 * 3 2 1 7 7 C 1.40040 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99560 * 1.95404 * 7 2 1 9 9 C 1.41331 * 120.00071 * 181.94839 * 7 2 1 10 10 C 1.40608 * 119.78696 * 186.97634 * 9 7 2 11 11 C 1.38311 * 119.12952 * 179.77076 * 10 9 7 12 12 C 1.38688 * 118.66752 * 0.49667 * 11 10 9 13 13 C 1.39640 * 119.49857 * 359.74697 * 12 11 10 14 14 N 1.39251 * 119.57626 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99737 * 18.82212 * 14 13 12 16 16 O 1.21575 * 120.00294 * 5.80255 * 15 14 13 17 17 N 1.34778 * 120.00105 * 185.80047 * 15 14 13 18 18 C 1.46989 * 127.25073 * 359.69115 * 17 15 14 19 19 C 1.50586 * 107.13400 * 179.90813 * 18 17 15 20 20 C 1.30397 * 110.11871 * 0.36954 * 19 18 17 21 21 C 1.46980 * 127.25844 * 179.97438 * 17 15 14 22 22 H 1.08999 * 109.90413 * 299.34729 * 21 17 15 23 23 C 1.53000 * 109.90386 * 60.58867 * 21 17 15 24 24 O 1.42902 * 109.46629 * 65.00201 * 23 21 17 25 25 N 1.31930 * 120.85282 * 0.02562 * 13 12 11 26 26 H 0.96998 * 120.00548 * 174.82881 * 1 2 3 27 27 H 1.08003 * 120.43396 * 359.97438 * 10 9 7 28 28 H 1.07992 * 120.66435 * 180.22202 * 11 10 9 29 29 H 1.08005 * 120.25115 * 179.76786 * 12 11 10 30 30 H 0.97000 * 120.00441 * 198.82964 * 14 13 12 31 31 H 1.09000 * 109.90377 * 299.40619 * 18 17 15 32 32 H 1.08999 * 109.90731 * 60.65202 * 18 17 15 33 33 H 1.08002 * 124.94050 * 180.13673 * 19 18 17 34 34 H 1.08001 * 124.93809 * 179.75533 * 20 19 18 35 35 H 1.09000 * 109.47310 * 184.99745 * 23 21 17 36 36 H 1.08995 * 109.47159 * 305.00795 * 23 21 17 37 37 H 0.96707 * 113.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0953 1.6962 -1.2124 7 6 2.0075 -1.2128 0.0005 8 1 1.4679 -2.1478 -0.0309 9 6 3.4202 -1.2132 0.0422 10 6 4.1230 -2.4220 -0.1055 11 6 5.5055 -2.4060 -0.0673 12 6 6.1518 -1.1943 0.1264 13 6 5.3974 -0.0282 0.2718 14 7 6.0446 1.1892 0.4669 15 6 7.3467 1.3194 0.1443 16 8 7.9287 0.4095 -0.4136 17 7 8.0037 2.4584 0.4403 18 6 7.4597 3.6531 1.1017 19 6 8.5823 4.6512 1.2080 20 6 9.6701 4.1603 0.6827 21 6 9.4134 2.7699 0.1646 22 1 10.0583 2.0572 0.6785 23 6 9.6728 2.7197 -1.3424 24 8 8.9286 3.7545 -1.9885 25 7 4.0794 -0.0652 0.2276 26 1 -0.4851 -0.8366 -0.0757 27 1 3.5904 -3.3504 -0.2500 28 1 6.0703 -3.3194 -0.1816 29 1 7.2304 -1.1528 0.1642 30 1 5.5584 1.9435 0.8350 31 1 6.6463 4.0686 0.5069 32 1 7.0999 3.3946 2.0976 33 1 8.4976 5.6325 1.6511 34 1 10.6175 4.6760 0.6274 35 1 10.7363 2.8638 -1.5331 36 1 9.3616 1.7507 -1.7326 37 1 9.0450 3.7821 -2.9482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:39 Heat of formation + Delta-G solvation = -5.287092 kcal Electronic energy + Delta-G solvation = -22920.389614 eV Core-core repulsion = 19470.775523 eV Total energy + Delta-G solvation = -3449.614091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80649 -39.14900 -37.72415 -36.29614 -34.54974 -33.51924 -32.01689 -31.09888 -30.30155 -29.12704 -25.64345 -25.27334 -23.59159 -21.87546 -21.48774 -19.73835 -19.53073 -18.57331 -18.05335 -17.40325 -16.54166 -16.00853 -15.57257 -15.03704 -14.76717 -14.53266 -14.13551 -14.06168 -13.66813 -13.41552 -13.01994 -12.89342 -12.70178 -12.53396 -12.19090 -12.14721 -11.83241 -11.20080 -11.11334 -10.80103 -10.35476 -10.14184 -9.99977 -9.77243 -9.64087 -9.37015 -9.13854 -8.54526 -8.46191 -7.77867 -7.33547 -7.22351 -4.75600 1.93607 2.37726 2.51312 2.67503 3.40294 3.55470 3.67678 3.91896 4.00745 4.13421 4.39489 4.41153 4.56546 4.67698 5.05941 5.11256 5.28742 5.40728 5.43122 5.51289 5.55476 5.56967 5.83531 5.99112 6.09777 6.14425 6.45977 6.52096 6.55912 6.67013 6.99020 7.18237 7.34372 7.46615 7.52555 7.63153 7.76365 7.90559 8.19271 8.34198 8.64371 8.74701 9.43215 10.02274 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.005097 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.903703 B = 5492.411010 C = 6308.625916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.044 3.956 3 Si 1.157 2.843 4 H -0.333 1.333 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.276 3.724 10 C -0.279 4.279 11 C -0.033 4.033 12 C -0.311 4.311 13 C 0.406 3.594 14 N -0.663 5.663 15 C 0.740 3.260 16 O -0.561 6.561 17 N -0.628 5.628 18 C 0.119 3.881 19 C -0.156 4.156 20 C -0.153 4.153 21 C 0.183 3.817 22 H 0.096 0.904 23 C 0.064 3.936 24 O -0.564 6.564 25 N -0.601 5.601 26 H 0.283 0.717 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.404 0.596 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.294 9.529 1.165 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.177 4.177 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.152 3.848 10 C -0.302 4.302 11 C -0.058 4.058 12 C -0.336 4.336 13 C 0.174 3.826 14 N -0.310 5.310 15 C 0.442 3.558 16 O -0.437 6.437 17 N -0.367 5.367 18 C -0.004 4.004 19 C -0.174 4.174 20 C -0.172 4.172 21 C 0.078 3.922 22 H 0.114 0.886 23 C -0.015 4.015 24 O -0.369 6.369 25 N -0.327 5.327 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.239 0.761 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.711 11.129 1.527 20.135 hybrid contribution 0.417 -2.299 -0.579 2.407 sum 17.128 8.830 0.947 19.293 Atomic orbital electron populations 1.70638 1.08152 1.32781 1.31405 1.27747 0.95323 1.06116 0.88499 0.81788 0.70516 0.69640 0.78760 1.26650 1.21376 1.22212 1.20720 0.90088 0.96286 1.43874 0.89829 1.18257 0.93422 0.85853 0.87307 1.21588 0.93884 0.98442 1.16242 1.20919 0.94057 0.96360 0.94438 1.21536 1.01096 0.91069 1.19870 1.17775 0.88485 0.83170 0.93133 1.42303 1.09109 1.13947 1.65665 1.14898 0.80895 0.80916 0.79062 1.90832 1.67399 1.38468 1.47040 1.47162 1.11493 1.14521 1.63515 1.20842 0.96943 0.84886 0.97709 1.23115 0.94270 0.99325 1.00731 1.23033 0.99613 0.95391 0.99136 1.20286 0.82419 0.95336 0.94123 0.88640 1.22520 0.94518 0.91819 0.92598 1.86502 1.71610 1.54501 1.24311 1.65871 1.06632 1.29688 1.30488 0.90593 0.87676 0.87607 0.84141 0.76091 0.90308 0.90445 0.83721 0.83793 0.92994 0.91505 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.28 13.65 55.55 0.76 -21.52 16 2 C 0.04 1.22 5.52 -17.34 -0.10 1.12 16 3 Si 1.16 28.72 25.54 -169.99 -4.34 24.38 16 4 H -0.33 -8.12 7.11 56.52 0.40 -7.72 16 5 H -0.29 -6.81 6.69 56.52 0.38 -6.44 16 6 H -0.29 -7.48 7.10 56.52 0.40 -7.08 16 7 C -0.48 -13.24 9.58 -37.73 -0.36 -13.60 16 8 H 0.08 2.30 8.05 -52.49 -0.42 1.88 16 9 C 0.28 7.40 6.39 -85.00 -0.54 6.86 16 10 C -0.28 -6.79 9.83 -38.66 -0.38 -7.17 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.31 -7.22 8.83 -38.89 -0.34 -7.57 16 13 C 0.41 9.69 7.51 -154.98 -1.16 8.53 16 14 N -0.66 -13.36 5.38 -15.79 -0.08 -13.45 16 15 C 0.74 13.75 8.18 -86.92 -0.71 13.04 16 16 O -0.56 -11.70 12.24 5.30 0.06 -11.64 16 17 N -0.63 -9.07 3.06 -173.87 -0.53 -9.61 16 18 C 0.12 1.37 6.34 -4.98 -0.03 1.34 16 19 C -0.16 -1.40 10.87 -35.91 -0.39 -1.79 16 20 C -0.15 -1.38 9.62 -35.91 -0.35 -1.73 16 21 C 0.18 2.13 3.41 -68.88 -0.23 1.90 16 22 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 23 C 0.06 0.73 6.72 37.16 0.25 0.98 16 24 O -0.56 -6.61 13.05 -35.23 -0.46 -7.07 16 25 N -0.60 -15.67 4.58 -10.26 -0.05 -15.72 16 26 H 0.28 7.45 8.72 -40.82 -0.36 7.10 16 27 H 0.11 2.38 8.06 -52.48 -0.42 1.95 16 28 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.14 3.21 5.33 -52.50 -0.28 2.93 16 30 H 0.40 7.36 7.94 -40.82 -0.32 7.03 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.94 6.79 -51.93 -0.35 0.58 16 37 H 0.38 2.92 9.12 45.56 0.42 3.33 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -33.26 312.09 -8.21 -41.47 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.52 Total: 7.68 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -4.75 Total: 0.76 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.09 Total: -60.29 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.39 Total: -18.71 kcal Atomic # 14 Polarization: 28.72 SS G_CDS: -4.34 Total: 24.38 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.26 -8.21 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.183 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds