Wall clock time and date at job start Tue Mar 31 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46862 * 270.00187 * 3 2 1 5 5 H 1.48501 * 109.47344 * 29.99333 * 3 2 1 6 6 H 1.48497 * 109.47440 * 149.99945 * 3 2 1 7 7 C 1.40029 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00446 * 180.02562 * 7 2 1 9 9 C 1.41336 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.40604 * 119.78927 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.13056 * 179.74587 * 10 9 7 12 12 C 1.38692 * 118.66962 * 0.47000 * 11 10 9 13 13 C 1.39648 * 119.49592 * 359.50402 * 12 11 10 14 14 N 1.39240 * 119.57443 * 180.25062 * 13 12 11 15 15 C 1.34785 * 120.00178 * 174.65280 * 14 13 12 16 16 O 1.21573 * 119.99676 * 5.15794 * 15 14 13 17 17 N 1.34772 * 120.00357 * 185.16038 * 15 14 13 18 18 C 1.46988 * 127.25051 * 359.68219 * 17 15 14 19 19 C 1.50591 * 107.13245 * 179.91422 * 18 17 15 20 20 C 1.30395 * 110.11871 * 0.36715 * 19 18 17 21 21 C 1.46983 * 127.25420 * 179.97438 * 17 15 14 22 22 H 1.08996 * 109.90377 * 60.40594 * 21 17 15 23 23 C 1.52997 * 109.90265 * 299.33661 * 21 17 15 24 24 O 1.42901 * 109.47499 * 294.99894 * 23 21 17 25 25 N 1.31933 * 120.84767 * 0.27722 * 13 12 11 26 26 H 0.96999 * 119.99694 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.43484 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.66891 * 180.22504 * 11 10 9 29 29 H 1.07996 * 120.25234 * 179.77762 * 12 11 10 30 30 H 0.96998 * 120.00585 * 354.65487 * 14 13 12 31 31 H 1.09004 * 109.90361 * 299.40800 * 18 17 15 32 32 H 1.08997 * 109.90809 * 60.66034 * 18 17 15 33 33 H 1.07994 * 124.93953 * 180.14187 * 19 18 17 34 34 H 1.07997 * 124.94051 * 179.79147 * 20 19 18 35 35 H 1.09002 * 109.47243 * 55.00285 * 23 21 17 36 36 H 1.09004 * 109.46993 * 175.00355 * 23 21 17 37 37 H 0.96700 * 114.00181 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6528 0.6999 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0016 11 6 1.3031 -4.8415 0.0070 12 6 -0.0830 -4.7934 0.0011 13 6 -0.7280 -3.5548 0.0006 14 7 -2.1195 -3.5046 0.0000 15 6 -2.7512 -2.3189 0.1082 16 8 -2.1093 -1.2864 0.1119 17 7 -4.0942 -2.2778 0.2124 18 6 -5.0215 -3.4183 0.2184 19 6 -6.4125 -2.8584 0.3576 20 6 -6.3677 -1.5567 0.4209 21 6 -4.9408 -1.0828 0.3379 22 1 -4.8099 -0.4421 -0.5341 23 6 -4.5721 -0.3145 1.6086 24 8 -4.8801 -1.1120 2.7537 25 7 -0.0358 -2.4317 0.0001 26 1 -0.4850 0.8401 0.0004 27 1 3.0883 -3.6560 0.0021 28 1 1.8212 -5.7891 0.0116 29 1 -0.6591 -5.7069 0.0015 30 1 -2.6344 -4.3229 -0.0783 31 1 -4.9343 -3.9723 -0.7163 32 1 -4.8003 -4.0719 1.0621 33 1 -7.3159 -3.4488 0.3955 34 1 -7.2288 -0.9123 0.5191 35 1 -3.5060 -0.0878 1.5998 36 1 -5.1408 0.6145 1.6494 37 1 -4.6714 -0.6868 3.5968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:41 Heat of formation + Delta-G solvation = 27.691621 kcal Electronic energy + Delta-G solvation = -23277.279198 eV Core-core repulsion = 19829.095172 eV Total energy + Delta-G solvation = -3448.184027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.16033 -38.51634 -36.99596 -35.95071 -34.04318 -32.97487 -31.49367 -30.23525 -29.96151 -28.66273 -25.55534 -25.12259 -23.09757 -21.56469 -21.03599 -19.45358 -18.95711 -18.09182 -17.32768 -16.79156 -15.98504 -15.41923 -14.79002 -14.68940 -14.45429 -14.36984 -13.65626 -13.55357 -13.50619 -13.04894 -12.79456 -12.47972 -12.26310 -11.97761 -11.89699 -11.81930 -11.14064 -10.91972 -10.79051 -10.61081 -10.42863 -9.90522 -9.85102 -9.67907 -9.37857 -9.04983 -8.97861 -7.97458 -7.89431 -7.18015 -6.89830 -6.07792 -4.35432 2.17251 2.87297 3.05605 3.15901 3.18837 3.21486 3.30508 4.09366 4.19961 4.36324 4.54418 4.71566 4.87125 4.98507 5.38989 5.42874 5.54162 5.65590 5.72218 5.83539 5.98735 6.09039 6.13912 6.27066 6.43761 6.55251 6.71921 6.84317 6.88892 6.92434 7.26134 7.47833 7.66339 7.79137 7.82440 7.85599 8.20803 8.32285 8.69016 8.82706 9.10024 9.60504 10.30830 10.53179 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.006104 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.407348 B = 4586.385846 C = 5996.398699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.650 5.650 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.272 3.728 10 C -0.306 4.306 11 C -0.035 4.035 12 C -0.357 4.357 13 C 0.388 3.612 14 N -0.669 5.669 15 C 0.695 3.305 16 O -0.458 6.458 17 N -0.637 5.637 18 C 0.126 3.874 19 C -0.165 4.165 20 C -0.150 4.150 21 C 0.186 3.814 22 H 0.090 0.910 23 C 0.065 3.935 24 O -0.566 6.566 25 N -0.472 5.472 26 H 0.270 0.730 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.395 0.605 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 -1.784 1.590 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.268 5.268 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.147 3.853 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.383 4.383 13 C 0.148 3.852 14 N -0.317 5.317 15 C 0.396 3.604 16 O -0.322 6.322 17 N -0.381 5.381 18 C 0.003 3.997 19 C -0.183 4.183 20 C -0.169 4.169 21 C 0.081 3.919 22 H 0.108 0.892 23 C -0.013 4.013 24 O -0.370 6.370 25 N -0.191 5.191 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.228 0.772 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.180 -0.390 1.127 13.234 hybrid contribution 0.522 -0.277 0.421 0.725 sum -12.659 -0.667 1.548 12.770 Atomic orbital electron populations 1.70359 1.05587 1.27147 1.23726 1.26187 0.95124 1.00484 0.95415 0.86550 0.80581 0.82042 0.78962 1.19711 1.20423 1.18795 1.19563 0.94010 0.89375 1.42702 0.90014 1.18391 0.87131 0.91953 0.87852 1.21620 0.98523 0.93543 1.19252 1.20538 0.93067 0.96525 0.95821 1.20435 0.94766 0.94779 1.28357 1.18331 0.82302 0.90946 0.93597 1.42523 1.05166 1.07708 1.76308 1.15732 0.78934 0.85606 0.80175 1.91369 1.60699 1.30056 1.50049 1.47494 1.03865 1.06768 1.79925 1.20656 0.87687 0.90609 1.00783 1.23102 0.97285 0.96334 1.01555 1.23071 0.96416 0.96842 1.00540 1.20129 0.87316 0.88034 0.96411 0.89248 1.22540 1.01090 0.92094 0.85616 1.86475 1.87962 1.46561 1.16017 1.68684 1.06881 1.23098 1.20403 0.91779 0.88593 0.88613 0.89164 0.77196 0.91539 0.91328 0.84361 0.84321 0.90960 0.93689 0.78155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.20 8.98 55.55 0.50 -17.71 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 3 Si 0.89 19.44 29.56 -169.99 -5.02 14.42 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.43 -11.89 9.14 -37.73 -0.34 -12.23 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.79 6.55 -85.00 -0.56 7.23 16 10 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -8.28 9.96 -38.89 -0.39 -8.67 16 13 C 0.39 9.83 7.43 -154.99 -1.15 8.67 16 14 N -0.67 -14.25 5.35 -15.79 -0.08 -14.33 16 15 C 0.69 15.25 8.30 -86.91 -0.72 14.53 16 16 O -0.46 -11.92 11.21 5.30 0.06 -11.86 16 17 N -0.64 -10.93 3.06 -173.86 -0.53 -11.46 16 18 C 0.13 1.66 6.34 -4.98 -0.03 1.63 16 19 C -0.16 -1.80 10.87 -35.91 -0.39 -2.19 16 20 C -0.15 -1.73 9.62 -35.91 -0.35 -2.08 16 21 C 0.19 2.78 3.41 -68.87 -0.23 2.54 16 22 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 23 C 0.07 0.98 6.72 37.16 0.25 1.23 16 24 O -0.57 -8.28 13.05 -35.23 -0.46 -8.74 16 25 N -0.47 -13.59 5.74 -10.26 -0.06 -13.64 16 26 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 27 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 28 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.39 6.79 7.81 -40.82 -0.32 6.47 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.07 1.35 6.79 -51.93 -0.35 1.00 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.37 4.01 9.12 45.56 0.42 4.42 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -34.47 314.78 -9.25 -43.72 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.61 Total: 12.22 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -4.79 Total: 2.64 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.18 Total: -57.15 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.40 Total: -20.60 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.47 -9.25 -43.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.416 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds