Wall clock time and date at job start Tue Mar 31 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46862 * 270.00187 * 3 2 1 5 5 H 1.48501 * 109.47344 * 29.99333 * 3 2 1 6 6 H 1.48497 * 109.47440 * 149.99945 * 3 2 1 7 7 C 1.40029 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00446 * 180.02562 * 7 2 1 9 9 C 1.41336 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.40604 * 119.78927 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.13056 * 179.74587 * 10 9 7 12 12 C 1.38692 * 118.66962 * 0.47000 * 11 10 9 13 13 C 1.39648 * 119.49592 * 359.50402 * 12 11 10 14 14 N 1.39240 * 119.57443 * 180.25062 * 13 12 11 15 15 C 1.34785 * 120.00178 * 174.65280 * 14 13 12 16 16 O 1.21573 * 119.99676 * 5.15794 * 15 14 13 17 17 N 1.34772 * 120.00357 * 185.16038 * 15 14 13 18 18 C 1.46988 * 127.25051 * 359.68219 * 17 15 14 19 19 C 1.50591 * 107.13245 * 179.91422 * 18 17 15 20 20 C 1.30395 * 110.11871 * 0.36715 * 19 18 17 21 21 C 1.46983 * 127.25420 * 179.97438 * 17 15 14 22 22 H 1.08996 * 109.90377 * 60.40594 * 21 17 15 23 23 C 1.52997 * 109.90265 * 299.33661 * 21 17 15 24 24 O 1.42901 * 109.47499 * 294.99894 * 23 21 17 25 25 N 1.31933 * 120.84767 * 0.27722 * 13 12 11 26 26 H 0.96999 * 119.99694 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.43484 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.66891 * 180.22504 * 11 10 9 29 29 H 1.07996 * 120.25234 * 179.77762 * 12 11 10 30 30 H 0.96998 * 120.00585 * 354.65487 * 14 13 12 31 31 H 1.09004 * 109.90361 * 299.40800 * 18 17 15 32 32 H 1.08997 * 109.90809 * 60.66034 * 18 17 15 33 33 H 1.07994 * 124.93953 * 180.14187 * 19 18 17 34 34 H 1.07997 * 124.94051 * 179.79147 * 20 19 18 35 35 H 1.09002 * 109.47243 * 55.00285 * 23 21 17 36 36 H 1.09004 * 109.46993 * 175.00355 * 23 21 17 37 37 H 0.96700 * 114.00181 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6528 0.6999 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0016 11 6 1.3031 -4.8415 0.0070 12 6 -0.0830 -4.7934 0.0011 13 6 -0.7280 -3.5548 0.0006 14 7 -2.1195 -3.5046 0.0000 15 6 -2.7512 -2.3189 0.1082 16 8 -2.1093 -1.2864 0.1119 17 7 -4.0942 -2.2778 0.2124 18 6 -5.0215 -3.4183 0.2184 19 6 -6.4125 -2.8584 0.3576 20 6 -6.3677 -1.5567 0.4209 21 6 -4.9408 -1.0828 0.3379 22 1 -4.8099 -0.4421 -0.5341 23 6 -4.5721 -0.3145 1.6086 24 8 -4.8801 -1.1120 2.7537 25 7 -0.0358 -2.4317 0.0001 26 1 -0.4850 0.8401 0.0004 27 1 3.0883 -3.6560 0.0021 28 1 1.8212 -5.7891 0.0116 29 1 -0.6591 -5.7069 0.0015 30 1 -2.6344 -4.3229 -0.0783 31 1 -4.9343 -3.9723 -0.7163 32 1 -4.8003 -4.0719 1.0621 33 1 -7.3159 -3.4488 0.3955 34 1 -7.2288 -0.9123 0.5191 35 1 -3.5060 -0.0878 1.5998 36 1 -5.1408 0.6145 1.6494 37 1 -4.6714 -0.6868 3.5968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:40 Heat of formation + Delta-G solvation = 2.902658 kcal Electronic energy + Delta-G solvation = -23278.354128 eV Core-core repulsion = 19829.095172 eV Total energy + Delta-G solvation = -3449.258957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57071 -40.18562 -38.64764 -37.11174 -35.90678 -34.85555 -32.83091 -32.16886 -31.18452 -30.43021 -27.46953 -26.31617 -24.59457 -23.36180 -22.75279 -20.71433 -20.36380 -19.72248 -18.83253 -18.15856 -17.82628 -16.76442 -16.46621 -16.26393 -16.04388 -15.67970 -15.44972 -15.13489 -14.87215 -14.58338 -14.29879 -13.85438 -13.80345 -13.60519 -13.28429 -12.89487 -12.86362 -12.71997 -12.55186 -12.31330 -11.84194 -11.76921 -11.54519 -11.11817 -10.88396 -10.71392 -10.42551 -9.89251 -9.25837 -9.11737 -8.77722 -8.02001 -6.40984 0.96008 1.28086 1.31030 1.38901 1.50939 1.53819 1.60179 2.26715 2.50992 3.02986 3.07124 3.32862 3.69596 3.88914 4.07034 4.25665 4.32296 4.36588 4.51159 4.63589 4.64809 4.71866 4.74840 4.85044 4.92778 4.96630 5.05230 5.26808 5.35547 5.46436 5.68234 5.84803 5.92345 5.95456 6.08174 6.29294 6.40281 6.80793 6.83266 7.05806 7.14022 7.94316 8.37239 8.58683 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.006104 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.407348 B = 4586.385846 C = 5996.398699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.685 5.685 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.237 3.763 10 C -0.329 4.329 11 C -0.032 4.032 12 C -0.347 4.347 13 C 0.364 3.636 14 N -0.660 5.660 15 C 0.685 3.315 16 O -0.506 6.506 17 N -0.637 5.637 18 C 0.115 3.885 19 C -0.152 4.152 20 C -0.152 4.152 21 C 0.172 3.828 22 H 0.079 0.921 23 C 0.073 3.927 24 O -0.575 6.575 25 N -0.507 5.507 26 H 0.268 0.732 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.130 0.870 30 H 0.413 0.587 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 -3.027 1.756 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.304 5.304 2 C -0.216 4.216 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.352 4.352 11 C -0.056 4.056 12 C -0.373 4.373 13 C 0.125 3.875 14 N -0.310 5.310 15 C 0.386 3.614 16 O -0.374 6.374 17 N -0.379 5.379 18 C -0.008 4.008 19 C -0.169 4.169 20 C -0.170 4.170 21 C 0.067 3.933 22 H 0.096 0.904 23 C -0.006 4.006 24 O -0.382 6.382 25 N -0.226 5.226 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.157 0.843 29 H 0.148 0.852 30 H 0.250 0.750 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.195 0.805 34 H 0.189 0.811 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.057 -1.690 1.305 15.207 hybrid contribution 0.999 -0.081 0.389 1.075 sum -14.058 -1.771 1.694 14.270 Atomic orbital electron populations 1.70574 1.07178 1.27750 1.24880 1.27061 0.96021 1.03999 0.94549 0.85337 0.79133 0.76871 0.79123 1.19080 1.19890 1.17906 1.19898 0.94434 0.90439 1.44884 0.89563 1.18900 0.87838 0.93482 0.88641 1.21814 0.99246 0.93780 1.20344 1.21016 0.93297 0.97422 0.93861 1.20900 0.95258 0.95394 1.25724 1.18834 0.83849 0.91263 0.93552 1.42390 1.04027 1.08621 1.75952 1.15967 0.80373 0.85088 0.80019 1.91353 1.62536 1.31523 1.51964 1.47382 1.02867 1.09275 1.78384 1.20979 0.88392 0.89561 1.01828 1.23368 0.96982 0.96276 1.00316 1.23159 0.94757 0.97584 1.01513 1.20399 0.89416 0.87478 0.95963 0.90362 1.22376 0.98584 0.93535 0.86097 1.86415 1.87759 1.47242 1.16758 1.68647 1.07309 1.25207 1.21466 0.92127 0.87608 0.84326 0.85222 0.74999 0.89886 0.91013 0.80459 0.81114 0.95832 0.90586 0.76388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.57 8.98 21.84 0.20 -40.38 16 2 C 0.01 0.52 5.50 85.29 0.47 0.99 16 3 Si 0.97 41.56 29.56 68.60 2.03 43.58 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.47 -27.17 9.14 23.47 0.21 -26.96 16 8 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 9 C 0.24 14.10 6.55 40.20 0.26 14.36 16 10 C -0.33 -17.04 9.83 22.87 0.22 -16.81 16 11 C -0.03 -1.42 10.15 22.40 0.23 -1.20 16 12 C -0.35 -15.49 9.96 22.72 0.23 -15.26 16 13 C 0.36 18.66 7.43 133.25 0.99 19.65 16 14 N -0.66 -28.24 5.35 -322.13 -1.72 -29.96 16 15 C 0.69 30.99 8.30 179.05 1.49 32.48 16 16 O -0.51 -27.93 11.21 -3.94 -0.04 -27.97 16 17 N -0.64 -21.82 3.06 -822.24 -2.52 -24.34 16 18 C 0.11 2.77 6.34 85.51 0.54 3.31 16 19 C -0.15 -2.76 10.87 26.24 0.29 -2.48 16 20 C -0.15 -3.06 9.62 26.24 0.25 -2.81 16 21 C 0.17 5.08 3.41 44.12 0.15 5.23 16 22 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 23 C 0.07 2.20 6.72 71.98 0.48 2.69 16 24 O -0.58 -16.42 13.05 -148.98 -1.94 -18.36 16 25 N -0.51 -30.33 5.74 -186.37 -1.07 -31.40 16 26 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 27 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.41 13.74 7.81 -92.71 -0.72 13.01 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.02 0.94 6.79 -2.39 -0.02 0.93 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.39 8.15 9.12 -74.06 -0.68 7.47 16 Total: -1.00 -79.92 314.78 0.46 -79.46 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.28 Total: 36.17 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.81 Total: 13.19 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -5.11 Total: -126.07 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.99 Total: -46.33 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -79.92 0.46 -79.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.362 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds