Wall clock time and date at job start Tue Mar 31 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48500 * 109.47290 * 85.01024 * 3 2 1 5 5 H 1.48503 * 109.47025 * 205.00532 * 3 2 1 6 6 H 1.48500 * 109.47516 * 325.00552 * 3 2 1 7 7 C 1.40031 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99387 * 186.10945 * 7 2 1 9 9 C 1.41332 * 119.99916 * 6.10412 * 7 2 1 10 10 C 1.40611 * 119.78194 * 186.09076 * 9 7 2 11 11 C 1.38317 * 119.12379 * 179.77498 * 10 9 7 12 12 C 1.38686 * 118.67158 * 0.49520 * 11 10 9 13 13 C 1.39640 * 119.49798 * 359.74987 * 12 11 10 14 14 N 1.39250 * 119.57561 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99909 * 175.00223 * 14 13 12 16 16 O 1.21580 * 120.00221 * 5.63452 * 15 14 13 17 17 N 1.34779 * 119.99929 * 185.63738 * 15 14 13 18 18 C 1.46492 * 119.99915 * 180.02562 * 17 15 14 19 19 H 1.09008 * 115.51618 * 9.41105 * 18 17 15 20 20 C 1.52997 * 117.43623 * 154.78942 * 18 17 15 21 21 H 1.09001 * 119.80502 * 355.35855 * 20 18 17 22 22 C 1.54476 * 118.07113 * 198.08506 * 20 18 17 23 23 O 1.44257 * 104.84133 * 273.13440 * 22 20 18 24 24 C 1.44421 * 105.26927 * 40.45632 * 23 22 20 25 25 C 1.53005 * 117.43093 * 224.04623 * 18 17 15 26 26 H 1.08991 * 119.81042 * 4.62961 * 25 18 17 27 27 N 1.31928 * 120.85040 * 359.97438 * 13 12 11 28 28 H 0.97003 * 120.00261 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.43826 * 0.02562 * 10 9 7 30 30 H 1.07998 * 120.66328 * 180.22648 * 11 10 9 31 31 H 1.08000 * 120.25068 * 179.77000 * 12 11 10 32 32 H 0.96996 * 120.00520 * 354.99762 * 14 13 12 33 33 H 0.97001 * 120.00032 * 359.97438 * 17 15 14 34 34 H 1.09008 * 110.37102 * 31.99786 * 22 20 18 35 35 H 1.08996 * 110.38032 * 154.33720 * 22 20 18 36 36 H 1.09001 * 110.36935 * 200.71899 * 24 23 22 37 37 H 1.09000 * 110.37571 * 78.38697 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1073 1.3947 5 1 3.5878 1.4120 -0.5918 6 1 1.4956 2.6199 -0.8029 7 6 2.0075 -1.2127 -0.0005 8 1 3.0829 -1.2154 0.0990 9 6 1.3068 -2.4331 -0.1312 10 6 1.9965 -3.6517 -0.0028 11 6 1.2964 -4.8380 -0.1286 12 6 -0.0648 -4.7830 -0.3882 13 6 -0.6919 -3.5413 -0.5103 14 7 -2.0586 -3.4842 -0.7705 15 6 -2.6918 -2.2945 -0.7900 16 8 -2.0543 -1.2647 -0.6827 17 7 -4.0316 -2.2463 -0.9285 18 6 -4.7196 -0.9532 -0.9503 19 1 -4.0726 -0.0780 -1.0104 20 6 -6.0675 -0.8840 -1.6709 21 1 -6.4413 -1.7570 -2.2059 22 6 -6.6032 0.5063 -2.0788 23 8 -7.3193 0.9810 -0.9199 24 6 -6.5098 0.5946 0.2120 25 6 -6.0047 -0.8247 -0.1300 26 1 -6.3311 -1.6528 0.4991 27 7 -0.0062 -2.4216 -0.3812 28 1 -0.4851 0.8400 0.0004 29 1 3.0581 -3.6613 0.1954 30 1 1.8006 -5.7881 -0.0309 31 1 -0.6356 -5.6936 -0.4949 32 1 -2.5551 -4.3005 -0.9377 33 1 -4.5401 -3.0678 -1.0145 34 1 -5.7769 1.1768 -2.3154 35 1 -7.2775 0.4183 -2.9306 36 1 -7.1124 0.5744 1.1201 37 1 -5.6693 1.2787 0.3286 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:51 Heat of formation + Delta-G solvation = 27.208437 kcal Electronic energy + Delta-G solvation = -22543.532804 eV Core-core repulsion = 19095.327825 eV Total energy + Delta-G solvation = -3448.204979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49244 -39.30888 -37.67927 -35.39004 -34.05775 -33.03119 -32.13215 -30.29417 -28.87447 -28.79817 -25.64824 -24.85611 -22.32754 -21.35230 -20.97358 -20.73801 -19.91039 -18.10844 -17.33275 -16.90070 -16.10241 -15.39910 -15.22297 -14.92828 -14.58962 -14.54224 -14.39666 -13.75729 -13.37436 -12.89355 -12.85290 -12.79293 -12.23083 -12.00115 -11.77096 -11.71671 -11.20252 -10.93827 -10.84188 -10.65505 -10.47709 -10.38550 -9.96814 -9.73359 -9.67147 -9.22816 -9.02267 -8.45552 -7.97434 -7.23750 -6.97188 -6.17053 -4.37920 2.81971 2.95706 3.10294 3.18244 3.20814 3.27202 3.41438 3.92526 4.07396 4.13610 4.37186 4.60185 4.75235 4.82759 4.94268 4.95150 5.04192 5.27439 5.54035 5.63526 5.67544 5.86833 5.95671 6.04149 6.10737 6.45660 6.57059 6.58946 6.77098 6.83550 6.85430 7.22155 7.30779 7.60251 7.70432 7.81028 8.15306 8.28041 8.58737 8.78980 9.05173 9.47935 10.24773 10.48419 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.004963 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.435507 B = 5640.642221 C = 7249.171973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.427 4.427 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.306 4.306 11 C -0.035 4.035 12 C -0.357 4.357 13 C 0.386 3.614 14 N -0.671 5.671 15 C 0.669 3.331 16 O -0.459 6.459 17 N -0.729 5.729 18 C 0.163 3.837 19 H 0.140 0.860 20 C -0.212 4.212 21 H 0.120 0.880 22 C 0.077 3.923 23 O -0.376 6.376 24 C 0.076 3.924 25 C -0.212 4.212 26 H 0.120 0.880 27 N -0.474 5.474 28 H 0.272 0.728 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.396 0.604 33 H 0.387 0.613 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 -1.528 -2.061 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.170 4.170 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.457 4.457 8 H 0.101 0.899 9 C 0.148 3.852 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.383 4.383 13 C 0.146 3.854 14 N -0.319 5.319 15 C 0.367 3.633 16 O -0.323 6.323 17 N -0.385 5.385 18 C 0.055 3.945 19 H 0.158 0.842 20 C -0.232 4.232 21 H 0.138 0.862 22 C 0.000 4.000 23 O -0.295 6.295 24 C -0.001 4.001 25 C -0.233 4.233 26 H 0.138 0.862 27 N -0.192 5.192 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.229 0.771 33 H 0.220 0.780 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.538 0.593 -2.006 12.711 hybrid contribution 0.273 -1.404 -0.035 1.431 sum -12.265 -0.811 -2.041 12.460 Atomic orbital electron populations 1.70261 1.05867 1.27499 1.23603 1.26148 0.95067 1.00580 0.95214 0.86516 0.80743 0.82003 0.78787 1.19777 1.18682 1.20258 1.19572 0.94484 0.89548 1.42097 0.89932 1.18366 0.87107 0.91944 0.87740 1.21635 0.99344 0.93539 1.18377 1.20549 0.93175 0.96568 0.95666 1.20418 0.95981 0.94705 1.27239 1.18289 0.82716 0.90920 0.93453 1.42511 1.07816 1.07554 1.74067 1.16334 0.80941 0.85607 0.80386 1.91369 1.62358 1.30305 1.48248 1.44650 1.06287 1.06885 1.80699 1.21358 0.86773 0.88864 0.97528 0.84240 1.24738 1.02895 1.00282 0.95267 0.86219 1.22835 0.96236 0.91540 0.89380 1.89127 1.46043 1.79154 1.15152 1.22885 0.94908 0.92218 0.90065 1.24800 1.04680 0.99847 0.93942 0.86226 1.68600 1.07302 1.23478 1.19835 0.91598 0.88529 0.88581 0.89135 0.77130 0.77991 0.91579 0.88619 0.88605 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.10 9.19 55.55 0.51 -17.59 16 2 C 0.06 1.57 5.48 -17.34 -0.09 1.47 16 3 Si 0.90 19.28 29.56 -169.99 -5.03 14.25 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.43 -11.76 9.13 -37.73 -0.34 -12.10 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.69 6.53 -85.00 -0.55 7.14 16 10 C -0.31 -7.70 9.83 -38.66 -0.38 -8.08 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.36 -7.98 9.95 -38.89 -0.39 -8.37 16 13 C 0.39 9.39 7.43 -154.99 -1.15 8.24 16 14 N -0.67 -13.09 5.39 -15.79 -0.09 -13.17 16 15 C 0.67 13.45 8.52 -86.91 -0.74 12.71 16 16 O -0.46 -11.53 11.79 5.30 0.06 -11.47 16 17 N -0.73 -10.53 5.57 -58.68 -0.33 -10.86 16 18 C 0.16 2.22 5.98 -67.93 -0.41 1.81 16 19 H 0.14 2.24 7.40 -51.92 -0.38 1.85 16 20 C -0.21 -2.28 7.13 -89.15 -0.64 -2.91 16 21 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 22 C 0.08 0.81 7.43 37.93 0.28 1.09 16 23 O -0.38 -4.64 11.65 -35.23 -0.41 -5.05 16 24 C 0.08 0.85 7.44 37.93 0.28 1.13 16 25 C -0.21 -2.41 7.13 -89.14 -0.64 -3.05 16 26 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 27 N -0.47 -13.30 5.77 -10.26 -0.06 -13.36 16 28 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.40 5.84 8.71 -40.82 -0.36 5.49 16 33 H 0.39 4.26 8.85 -40.82 -0.36 3.89 16 34 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -33.21 316.50 -10.18 -43.40 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.45 Total: 11.20 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -5.17 Total: -2.12 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.04 Total: -54.98 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.35 Total: -16.52 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.21 -10.18 -43.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.604 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds