Wall clock time and date at job start Tue Mar 31 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47289 * 290.11445 * 3 2 1 5 5 C 1.42903 * 114.00032 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47076 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47111 * 65.00321 * 6 5 4 8 8 C 1.34777 * 120.00152 * 180.02562 * 7 6 5 9 9 O 1.21578 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99905 * 179.97438 * 8 7 6 11 11 C 1.39246 * 119.99674 * 185.63604 * 10 8 7 12 12 C 1.39684 * 119.57239 * 174.99887 * 11 10 8 13 13 C 1.38644 * 119.49313 * 180.02562 * 12 11 10 14 14 C 1.38354 * 118.67381 * 359.73271 * 13 12 11 15 15 C 1.40583 * 119.12777 * 0.53370 * 14 13 12 16 16 C 1.41331 * 119.78539 * 179.72859 * 15 14 13 17 17 H 1.07997 * 120.00366 * 6.09511 * 16 15 14 18 18 C 1.40023 * 119.99644 * 186.09085 * 16 15 14 19 19 N 1.30747 * 120.00194 * 6.11359 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 186.10995 * 18 16 15 21 21 H 1.48501 * 109.47252 * 265.00384 * 20 18 16 22 22 H 1.48505 * 109.47076 * 25.00473 * 20 18 16 23 23 H 1.48507 * 109.47147 * 145.00244 * 20 18 16 24 24 N 1.31907 * 119.57661 * 355.02284 * 11 10 8 25 25 H 4.38439 * 5.44396 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46787 * 170.11409 * 3 2 1 27 27 H 1.08999 * 109.47578 * 50.11777 * 3 2 1 28 28 H 1.08999 * 109.46879 * 60.00435 * 5 4 3 29 29 H 1.08997 * 109.47315 * 300.00206 * 5 4 3 30 30 H 1.08994 * 109.47068 * 304.99994 * 6 5 4 31 31 H 1.09000 * 109.46841 * 185.00218 * 6 5 4 32 32 H 0.97002 * 119.99743 * 359.97438 * 7 6 5 33 33 H 0.96998 * 120.00240 * 5.63424 * 10 8 7 34 34 H 1.07999 * 120.25476 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.66416 * 180.02562 * 13 12 11 36 36 H 1.08000 * 120.44068 * 180.25793 * 14 13 12 37 37 H 0.97002 * 119.99518 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.4624 1.2650 5 6 4.5471 -0.5000 1.3711 6 6 4.9419 -1.0089 2.7591 7 7 4.5051 -2.3988 2.9120 8 6 4.7461 -3.0583 4.0625 9 8 5.3265 -2.4998 4.9731 10 7 4.3438 -4.3369 4.2033 11 6 4.4869 -4.9806 5.4297 12 6 3.9726 -6.2686 5.5964 13 6 4.1155 -6.9078 6.8183 14 6 4.7732 -6.2468 7.8404 15 6 5.2636 -4.9492 7.6120 16 6 5.9325 -4.2589 8.6481 17 1 6.1528 -4.7623 9.5778 18 6 6.3097 -2.9224 8.4691 19 7 5.9394 -2.2770 7.3940 20 14 7.3418 -2.0614 9.7663 21 1 6.4518 -1.3163 10.6927 22 1 8.1186 -3.0702 10.5306 23 1 8.2755 -1.1132 9.1070 24 7 5.1061 -4.3662 6.4192 25 1 -1.0499 0.0001 0.0002 26 1 3.0088 1.0133 -0.1765 27 1 3.0097 -0.6581 -0.7886 28 1 4.9490 0.5023 1.2234 29 1 4.9506 -1.1689 0.6110 30 1 4.4654 -0.3923 3.5212 31 1 6.0246 -0.9538 2.8718 32 1 4.0417 -2.8443 2.1855 33 1 3.9546 -4.8086 3.4504 34 1 3.4674 -6.7627 4.7797 35 1 3.7255 -7.9038 6.9679 36 1 4.9044 -6.7196 8.8025 37 1 6.2004 -1.3510 7.2702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:55 Heat of formation + Delta-G solvation = 47.000578 kcal Electronic energy + Delta-G solvation = -21971.680437 eV Core-core repulsion = 18524.333709 eV Total energy + Delta-G solvation = -3447.346728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.44451 -38.44067 -37.53213 -34.60601 -33.85819 -33.19373 -32.90587 -30.26047 -29.78889 -28.45788 -26.85503 -25.42479 -22.98165 -21.68342 -21.06751 -19.77385 -18.73799 -17.97357 -17.16850 -16.94912 -16.46358 -15.99874 -15.21580 -14.78847 -14.63326 -14.41646 -14.22511 -13.66478 -13.33460 -13.08757 -12.80335 -12.63965 -12.36927 -11.90614 -11.83548 -11.50985 -11.10919 -10.87919 -10.78223 -10.74805 -10.58508 -10.40680 -9.89714 -9.84503 -9.58067 -9.05216 -8.93975 -8.38605 -7.89135 -7.13395 -6.86195 -6.08817 -4.30629 2.24531 2.53926 2.91129 3.19465 3.22284 3.25255 3.33449 3.33769 3.65641 4.12985 4.25401 4.32358 4.80456 4.82339 4.99119 5.01167 5.03146 5.10995 5.23265 5.63791 5.80699 6.02648 6.11775 6.18007 6.55094 6.69053 6.84084 6.88187 6.92190 7.06396 7.30372 7.31370 7.44940 7.69498 7.82649 7.88718 8.24662 8.38130 8.74931 8.88607 9.13246 9.67699 10.34364 10.56388 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.003949 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.731968 B = 7088.969730 C = 8290.696193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.194 4.194 3 C 0.172 3.828 4 O -0.377 6.377 5 C 0.052 3.948 6 C 0.148 3.852 7 N -0.756 5.756 8 C 0.665 3.335 9 O -0.468 6.468 10 N -0.673 5.673 11 C 0.388 3.612 12 C -0.358 4.358 13 C -0.036 4.036 14 C -0.308 4.308 15 C 0.273 3.727 16 C -0.428 4.428 17 H 0.082 0.918 18 C 0.059 3.941 19 N -0.652 5.652 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.263 1.263 23 H -0.278 1.278 24 N -0.474 5.474 25 H 0.221 0.779 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.387 0.613 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 5.283 -15.499 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.194 4.194 3 C 0.096 3.904 4 O -0.296 6.296 5 C -0.025 4.025 6 C 0.023 3.977 7 N -0.417 5.417 8 C 0.364 3.636 9 O -0.332 6.332 10 N -0.322 5.322 11 C 0.148 3.852 12 C -0.384 4.384 13 C -0.060 4.060 14 C -0.331 4.331 15 C 0.148 3.852 16 C -0.459 4.459 17 H 0.100 0.900 18 C -0.170 4.170 19 N -0.271 5.271 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.187 1.187 23 H -0.203 1.203 24 N -0.192 5.192 25 H 0.238 0.762 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.219 0.781 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.493 6.921 -14.670 16.593 hybrid contribution -0.459 -0.867 -0.422 1.068 sum -3.952 6.053 -15.092 16.734 Atomic orbital electron populations 1.24988 0.95940 1.00361 0.97909 1.22558 0.93971 1.00889 1.01985 1.19062 0.84779 0.99483 0.87068 1.88065 1.21518 1.87091 1.32967 1.22888 0.80744 1.00735 0.98140 1.21028 0.99673 0.82387 0.94571 1.45170 1.65737 1.13548 1.17200 1.16398 0.82011 0.81968 0.83269 1.91357 1.39982 1.65356 1.36502 1.42549 1.65265 1.12188 1.12187 1.18321 0.93142 0.87821 0.85874 1.20437 1.20554 0.97811 0.99638 1.20542 0.95750 0.96922 0.92778 1.21620 1.12818 0.99482 0.99206 1.18380 0.89013 0.88169 0.89602 1.19548 1.31082 0.95571 0.99656 0.90009 1.26154 0.96595 0.98289 0.96009 1.70277 1.28038 1.08755 1.19987 0.86529 0.80309 0.79772 0.81480 1.19828 1.18748 1.20311 1.68628 1.18863 1.32970 0.98786 0.76201 0.90885 0.90881 0.91474 0.92393 0.90965 0.90218 0.78102 0.77254 0.89175 0.88666 0.88616 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.05 13.73 -37.12 -0.51 -2.56 16 3 C 0.17 1.51 6.41 34.37 0.22 1.73 16 4 O -0.38 -4.36 10.25 -35.23 -0.36 -4.72 16 5 C 0.05 0.49 6.07 37.16 0.23 0.71 16 6 C 0.15 2.01 6.06 -4.04 -0.02 1.99 16 7 N -0.76 -11.79 5.51 -65.23 -0.36 -12.15 16 8 C 0.67 14.22 8.52 -86.92 -0.74 13.48 16 9 O -0.47 -12.31 12.23 5.30 0.06 -12.25 16 10 N -0.67 -14.00 5.39 -15.78 -0.09 -14.08 16 11 C 0.39 9.86 7.43 -154.99 -1.15 8.71 16 12 C -0.36 -8.34 9.95 -38.89 -0.39 -8.72 16 13 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 14 C -0.31 -7.99 9.83 -38.66 -0.38 -8.37 16 15 C 0.27 7.93 6.53 -85.00 -0.55 7.37 16 16 C -0.43 -12.10 9.13 -37.74 -0.34 -12.45 16 17 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 18 C 0.06 1.60 5.48 -17.34 -0.09 1.50 16 19 N -0.65 -18.63 9.19 55.55 0.51 -18.12 16 20 Si 0.89 19.72 29.56 -169.99 -5.03 14.69 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 N -0.47 -13.79 5.77 -10.26 -0.06 -13.85 16 25 H 0.22 1.24 7.80 -54.10 -0.42 0.82 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.39 4.93 8.49 -40.82 -0.35 4.58 16 33 H 0.39 6.38 8.72 -40.82 -0.36 6.02 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -36.05 331.94 -8.36 -44.41 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.48 Total: 9.99 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -3.57 Total: 1.09 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.01 Total: -58.21 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.30 Total: -16.96 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.05 -8.36 -44.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.406 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds