Wall clock time and date at job start Tue Mar 31 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47289 * 290.11445 * 3 2 1 5 5 C 1.42903 * 114.00032 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47076 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47111 * 65.00321 * 6 5 4 8 8 C 1.34777 * 120.00152 * 180.02562 * 7 6 5 9 9 O 1.21578 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99905 * 179.97438 * 8 7 6 11 11 C 1.39246 * 119.99674 * 185.63604 * 10 8 7 12 12 C 1.39684 * 119.57239 * 174.99887 * 11 10 8 13 13 C 1.38644 * 119.49313 * 180.02562 * 12 11 10 14 14 C 1.38354 * 118.67381 * 359.73271 * 13 12 11 15 15 C 1.40583 * 119.12777 * 0.53370 * 14 13 12 16 16 C 1.41331 * 119.78539 * 179.72859 * 15 14 13 17 17 H 1.07997 * 120.00366 * 6.09511 * 16 15 14 18 18 C 1.40023 * 119.99644 * 186.09085 * 16 15 14 19 19 N 1.30747 * 120.00194 * 6.11359 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 186.10995 * 18 16 15 21 21 H 1.48501 * 109.47252 * 265.00384 * 20 18 16 22 22 H 1.48505 * 109.47076 * 25.00473 * 20 18 16 23 23 H 1.48507 * 109.47147 * 145.00244 * 20 18 16 24 24 N 1.31907 * 119.57661 * 355.02284 * 11 10 8 25 25 H 4.38439 * 5.44396 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.46787 * 170.11409 * 3 2 1 27 27 H 1.08999 * 109.47578 * 50.11777 * 3 2 1 28 28 H 1.08999 * 109.46879 * 60.00435 * 5 4 3 29 29 H 1.08997 * 109.47315 * 300.00206 * 5 4 3 30 30 H 1.08994 * 109.47068 * 304.99994 * 6 5 4 31 31 H 1.09000 * 109.46841 * 185.00218 * 6 5 4 32 32 H 0.97002 * 119.99743 * 359.97438 * 7 6 5 33 33 H 0.96998 * 120.00240 * 5.63424 * 10 8 7 34 34 H 1.07999 * 120.25476 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.66416 * 180.02562 * 13 12 11 36 36 H 1.08000 * 120.44068 * 180.25793 * 14 13 12 37 37 H 0.97002 * 119.99518 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.4624 1.2650 5 6 4.5471 -0.5000 1.3711 6 6 4.9419 -1.0089 2.7591 7 7 4.5051 -2.3988 2.9120 8 6 4.7461 -3.0583 4.0625 9 8 5.3265 -2.4998 4.9731 10 7 4.3438 -4.3369 4.2033 11 6 4.4869 -4.9806 5.4297 12 6 3.9726 -6.2686 5.5964 13 6 4.1155 -6.9078 6.8183 14 6 4.7732 -6.2468 7.8404 15 6 5.2636 -4.9492 7.6120 16 6 5.9325 -4.2589 8.6481 17 1 6.1528 -4.7623 9.5778 18 6 6.3097 -2.9224 8.4691 19 7 5.9394 -2.2770 7.3940 20 14 7.3418 -2.0614 9.7663 21 1 6.4518 -1.3163 10.6927 22 1 8.1186 -3.0702 10.5306 23 1 8.2755 -1.1132 9.1070 24 7 5.1061 -4.3662 6.4192 25 1 -1.0499 0.0001 0.0002 26 1 3.0088 1.0133 -0.1765 27 1 3.0097 -0.6581 -0.7886 28 1 4.9490 0.5023 1.2234 29 1 4.9506 -1.1689 0.6110 30 1 4.4654 -0.3923 3.5212 31 1 6.0246 -0.9538 2.8718 32 1 4.0417 -2.8443 2.1855 33 1 3.9546 -4.8086 3.4504 34 1 3.4674 -6.7627 4.7797 35 1 3.7255 -7.9038 6.9679 36 1 4.9044 -6.7196 8.8025 37 1 6.2004 -1.3510 7.2702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149623.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:54 Heat of formation + Delta-G solvation = 21.469346 kcal Electronic energy + Delta-G solvation = -21972.787554 eV Core-core repulsion = 18524.333709 eV Total energy + Delta-G solvation = -3448.453845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.10921 -39.65664 -38.99998 -36.09093 -35.48739 -34.81096 -34.04665 -32.20303 -31.29283 -29.93166 -27.68799 -27.31562 -24.34488 -23.32679 -22.82127 -21.44203 -19.81779 -19.40730 -18.74048 -18.09147 -17.72714 -17.12314 -16.54097 -16.25039 -16.18867 -15.99540 -15.60307 -15.51273 -14.73123 -14.65276 -14.43589 -13.90315 -13.68193 -13.38742 -13.23373 -12.88424 -12.69221 -12.54800 -12.43284 -12.29487 -11.77946 -11.51715 -11.48873 -11.44243 -10.87533 -10.83273 -10.50846 -9.91670 -9.79541 -9.09072 -8.76287 -8.05094 -6.37789 0.98746 1.30041 1.40724 1.52114 1.53016 1.56283 1.83177 1.85494 2.28773 2.59411 2.95107 3.05599 3.43170 3.60155 4.03648 4.09384 4.26138 4.34772 4.38250 4.48966 4.55833 4.71154 4.76132 4.85472 4.96948 4.98803 5.04282 5.08561 5.30116 5.67836 5.72353 5.88051 5.94353 6.06208 6.17695 6.33592 6.45148 6.61226 6.84800 7.09224 7.28493 8.03091 8.40021 8.60173 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.003949 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.731968 B = 7088.969730 C = 8290.696193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.235 4.235 3 C 0.167 3.833 4 O -0.408 6.408 5 C 0.063 3.937 6 C 0.145 3.855 7 N -0.733 5.733 8 C 0.657 3.343 9 O -0.521 6.521 10 N -0.662 5.662 11 C 0.365 3.635 12 C -0.347 4.347 13 C -0.033 4.033 14 C -0.332 4.332 15 C 0.238 3.762 16 C -0.469 4.469 17 H 0.086 0.914 18 C 0.011 3.989 19 N -0.690 5.690 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.256 1.256 23 H -0.274 1.274 24 N -0.510 5.510 25 H 0.248 0.752 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.404 0.596 33 H 0.417 0.583 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 4.853 -17.198 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.235 4.235 3 C 0.092 3.908 4 O -0.329 6.329 5 C -0.013 4.013 6 C 0.020 3.980 7 N -0.394 5.394 8 C 0.355 3.645 9 O -0.389 6.389 10 N -0.313 5.313 11 C 0.125 3.875 12 C -0.372 4.372 13 C -0.057 4.057 14 C -0.355 4.355 15 C 0.113 3.887 16 C -0.500 4.500 17 H 0.104 0.896 18 C -0.214 4.214 19 N -0.309 5.309 20 Si 0.797 3.203 21 H -0.189 1.189 22 H -0.180 1.180 23 H -0.199 1.199 24 N -0.230 5.230 25 H 0.264 0.736 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.240 0.760 33 H 0.254 0.746 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.075 6.466 -16.462 18.149 hybrid contribution -0.443 -0.839 -0.054 0.951 sum -4.517 5.627 -16.515 18.023 Atomic orbital electron populations 1.25843 0.97001 0.99517 0.96811 1.23310 0.95282 1.01845 1.03050 1.19322 0.84005 1.01086 0.86368 1.88000 1.22408 1.87626 1.34834 1.22829 0.80280 1.02593 0.95593 1.21160 0.99376 0.80692 0.96748 1.44949 1.64636 1.14032 1.15768 1.16728 0.81586 0.82084 0.84066 1.91345 1.42337 1.66454 1.38769 1.42403 1.64989 1.12254 1.11654 1.18836 0.93002 0.89015 0.86623 1.20917 1.18746 0.96810 1.00743 1.21030 0.94281 0.98470 0.91956 1.21812 1.13923 0.99051 1.00689 1.18884 0.89891 0.89727 0.90205 1.19881 1.33060 0.96799 1.00220 0.89605 1.27039 0.97565 0.98569 0.98268 1.70477 1.29547 1.08760 1.22126 0.85303 0.78363 0.78346 0.78294 1.18945 1.17958 1.19913 1.68586 1.20282 1.34468 0.99636 0.73567 0.88977 0.88611 0.88817 0.89716 0.93880 0.90418 0.76039 0.74630 0.85048 0.84397 0.87709 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 19.25 74.32 1.43 -1.57 16 2 C -0.23 -4.66 13.73 31.12 0.43 -4.23 16 3 C 0.17 2.58 6.41 70.18 0.45 3.03 16 4 O -0.41 -8.75 10.25 -148.98 -1.53 -10.28 16 5 C 0.06 1.05 6.07 71.98 0.44 1.49 16 6 C 0.14 3.90 6.06 86.38 0.52 4.42 16 7 N -0.73 -22.44 5.51 -478.55 -2.64 -25.08 16 8 C 0.66 28.44 8.52 179.05 1.53 29.96 16 9 O -0.52 -28.56 12.23 -3.96 -0.05 -28.61 16 10 N -0.66 -27.15 5.39 -322.12 -1.74 -28.89 16 11 C 0.37 18.51 7.43 133.26 0.99 19.50 16 12 C -0.35 -15.35 9.95 22.72 0.23 -15.12 16 13 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 14 C -0.33 -17.31 9.83 22.87 0.22 -17.08 16 15 C 0.24 14.27 6.53 40.19 0.26 14.53 16 16 C -0.47 -27.57 9.13 23.46 0.21 -27.36 16 17 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 18 C 0.01 0.63 5.48 85.29 0.47 1.10 16 19 N -0.69 -41.30 9.19 21.84 0.20 -41.10 16 20 Si 0.98 41.94 29.56 68.60 2.03 43.97 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 N -0.51 -30.60 5.77 -186.36 -1.08 -31.68 16 25 H 0.25 2.28 7.80 -4.42 -0.03 2.25 16 26 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 32 H 0.40 9.56 8.49 -92.71 -0.79 8.77 16 33 H 0.42 12.64 8.72 -92.71 -0.81 11.83 16 34 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -82.97 331.94 2.12 -80.85 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.49 Total: 33.40 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.41 Total: 7.41 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -5.25 Total: -126.74 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.57 Total: -38.88 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -82.97 2.12 -80.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149623.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.319 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds