Wall clock time and date at job start Tue Mar 31 2020 02:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86794 * 120.00228 * 2 1 4 4 H 1.48506 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47361 * 119.99559 * 3 2 1 6 6 H 1.48501 * 109.47182 * 239.99791 * 3 2 1 7 7 C 1.40035 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.41338 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78991 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.13300 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.66408 * 0.02562 * 11 10 9 13 13 C 1.39631 * 119.49845 * 359.97438 * 12 11 10 14 14 N 1.39273 * 119.57285 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99805 * 174.65239 * 14 13 12 16 16 O 1.21272 * 120.00275 * 5.13619 * 15 14 13 17 17 C 1.50700 * 119.99528 * 185.14399 * 15 14 13 18 18 C 1.53005 * 109.46472 * 179.97438 * 17 15 14 19 19 H 1.08997 * 110.43601 * 52.46296 * 18 17 15 20 20 C 1.54631 * 110.48235 * 174.99585 * 18 17 15 21 21 C 1.54478 * 101.76562 * 93.88367 * 20 18 17 22 22 N 1.46762 * 105.47524 * 25.41255 * 21 20 18 23 23 C 1.34427 * 111.29770 * 342.98644 * 22 21 20 24 24 O 1.21283 * 124.94156 * 180.43933 * 23 22 21 25 25 N 1.31926 * 120.85113 * 359.74218 * 13 12 11 26 26 H 0.96998 * 119.99968 * 0.02562 * 1 2 3 27 27 H 1.08011 * 120.43204 * 0.02562 * 10 9 7 28 28 H 1.07995 * 120.67161 * 179.97438 * 11 10 9 29 29 H 1.08007 * 120.24620 * 179.97438 * 12 11 10 30 30 H 0.96997 * 119.99575 * 354.64126 * 14 13 12 31 31 H 1.08999 * 109.47191 * 299.98928 * 17 15 14 32 32 H 1.08994 * 109.47871 * 59.99743 * 17 15 14 33 33 H 1.08997 * 110.97196 * 212.00061 * 20 18 17 34 34 H 1.09005 * 110.97063 * 335.76259 * 20 18 17 35 35 H 1.08991 * 110.25131 * 144.41603 * 21 20 18 36 36 H 1.09008 * 110.24769 * 266.41558 * 21 20 18 37 37 H 0.97004 * 124.35449 * 162.98361 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 1.2764 2.7464 0.0006 5 1 3.0951 1.6964 1.2126 6 1 3.0952 1.6963 -1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4368 0.0016 10 6 2.0083 -3.6519 0.0016 11 6 1.3031 -4.8416 0.0033 12 6 -0.0831 -4.7934 0.0043 13 6 -0.7279 -3.5549 0.0042 14 7 -2.1198 -3.5046 0.0058 15 6 -2.7511 -2.3189 0.1145 16 8 -2.1108 -1.2889 0.1172 17 6 -4.2527 -2.2729 0.2330 18 6 -4.7112 -0.8173 0.3426 19 1 -4.2959 -0.2250 -0.4727 20 6 -6.2553 -0.7347 0.3393 21 6 -6.5738 -0.7321 1.8509 22 7 -5.3739 -0.1947 2.5031 23 6 -4.3114 -0.2356 1.6806 24 8 -3.1946 0.1388 1.9694 25 7 -0.0358 -2.4318 0.0083 26 1 -0.4850 0.8400 -0.0004 27 1 3.0884 -3.6561 0.0012 28 1 1.8212 -5.7892 0.0029 29 1 -0.6593 -5.7069 0.0051 30 1 -2.6346 -4.3230 -0.0715 31 1 -4.7009 -2.7298 -0.6493 32 1 -4.5640 -2.8195 1.1231 33 1 -6.5957 0.1870 -0.1325 34 1 -6.6916 -1.6057 -0.1498 35 1 -7.4324 -0.0923 2.0545 36 1 -6.7686 -1.7473 2.1971 37 1 -5.3505 0.1462 3.4109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:15 Heat of formation + Delta-G solvation = -36.505815 kcal Electronic energy + Delta-G solvation = -23211.167584 eV Core-core repulsion = 19760.199747 eV Total energy + Delta-G solvation = -3450.967836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53144 -40.56299 -39.04150 -37.29545 -35.85219 -34.75773 -33.62948 -32.18331 -31.06481 -29.60053 -27.58037 -26.71900 -23.78378 -23.02923 -22.53162 -21.25869 -20.50171 -19.53613 -18.25924 -17.94701 -17.46371 -16.64436 -16.52203 -16.37660 -16.23165 -15.52104 -15.45423 -14.77912 -14.67542 -14.60483 -14.32613 -13.91992 -13.72998 -13.46290 -13.22726 -12.94357 -12.73811 -12.72298 -12.56274 -12.31289 -12.05283 -11.80343 -11.78173 -11.41501 -10.80719 -10.64518 -10.39088 -9.91973 -9.86178 -8.99459 -8.74431 -8.00489 -6.39649 0.97602 1.29118 1.34761 1.47778 1.50912 1.75751 2.25410 2.30277 2.46201 2.58674 3.03455 3.54039 3.63777 3.88224 4.08827 4.09488 4.28521 4.38928 4.53801 4.57881 4.73841 4.79775 4.83384 4.95228 4.97354 5.02611 5.12261 5.16710 5.27398 5.32525 5.71021 5.92699 5.94687 6.10215 6.15607 6.17233 6.42772 6.80729 6.93214 7.12103 7.48870 7.89022 8.41125 8.59416 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.006245 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.146612 B = 4482.595080 C = 5990.713456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.674 5.674 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.254 1.254 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.235 3.765 10 C -0.335 4.335 11 C -0.035 4.035 12 C -0.350 4.350 13 C 0.348 3.652 14 N -0.660 5.660 15 C 0.433 3.567 16 O -0.433 6.433 17 C -0.104 4.104 18 C -0.108 4.108 19 H 0.081 0.919 20 C -0.115 4.115 21 C 0.098 3.902 22 N -0.736 5.736 23 C 0.496 3.504 24 O -0.562 6.562 25 N -0.508 5.508 26 H 0.267 0.733 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.419 0.581 31 H 0.142 0.858 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.682 -4.378 0.679 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.292 5.292 2 C -0.221 4.221 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.187 1.187 6 H -0.178 1.178 7 C -0.499 4.499 8 H 0.102 0.898 9 C 0.110 3.890 10 C -0.358 4.358 11 C -0.059 4.059 12 C -0.375 4.375 13 C 0.109 3.891 14 N -0.310 5.310 15 C 0.216 3.784 16 O -0.297 6.297 17 C -0.144 4.144 18 C -0.130 4.130 19 H 0.100 0.900 20 C -0.152 4.152 21 C -0.024 4.024 22 N -0.392 5.392 23 C 0.282 3.718 24 O -0.439 6.439 25 N -0.228 5.228 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.257 0.743 31 H 0.159 0.841 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.346 -2.450 0.736 19.514 hybrid contribution 1.163 -0.223 0.546 1.304 sum -18.183 -2.673 1.282 18.423 Atomic orbital electron populations 1.70491 1.06942 1.27813 1.24004 1.27042 0.96067 1.03907 0.95040 0.85457 0.78601 0.76833 0.79983 1.20466 1.18665 1.17802 1.19843 0.94309 0.90522 1.45233 0.89781 1.18887 0.88174 0.93322 0.88644 1.21773 0.99052 0.93933 1.21020 1.21023 0.93702 0.97167 0.94032 1.20988 0.95132 0.95815 1.25557 1.19249 0.85754 0.90929 0.93168 1.43489 1.03238 1.10739 1.73573 1.22057 0.92230 0.84357 0.79744 1.91261 1.66844 1.32144 1.39491 1.21559 0.89674 0.96268 1.06902 1.21692 0.99369 0.96680 0.95307 0.90028 1.22768 0.89993 1.06131 0.96309 1.22372 0.86823 1.00959 0.92289 1.46398 1.11189 1.64799 1.16842 1.21517 0.83930 0.77585 0.88774 1.90894 1.23845 1.49185 1.79952 1.68705 1.07192 1.25572 1.21287 0.92276 0.88026 0.84611 0.84953 0.74306 0.84056 0.87230 0.89059 0.85320 0.87761 0.88986 0.75335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -42.55 9.00 21.84 0.20 -42.35 16 2 C 0.01 0.34 5.50 85.29 0.47 0.81 16 3 Si 0.97 44.76 29.56 68.60 2.03 46.79 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.47 -28.67 9.14 23.47 0.21 -28.46 16 8 H 0.08 4.81 7.85 -2.91 -0.02 4.79 16 9 C 0.24 14.53 6.55 40.21 0.26 14.79 16 10 C -0.33 -18.03 9.83 22.86 0.22 -17.81 16 11 C -0.04 -1.62 10.15 22.39 0.23 -1.39 16 12 C -0.35 -15.70 9.95 22.72 0.23 -15.47 16 13 C 0.35 17.81 7.43 133.23 0.99 18.80 16 14 N -0.66 -26.14 5.38 -308.38 -1.66 -27.80 16 15 C 0.43 17.79 7.59 87.66 0.67 18.45 16 16 O -0.43 -23.60 9.76 16.65 0.16 -23.44 16 17 C -0.10 -2.49 5.11 29.85 0.15 -2.33 16 18 C -0.11 -2.78 2.54 -10.80 -0.03 -2.81 16 19 H 0.08 2.63 7.90 -2.39 -0.02 2.61 16 20 C -0.11 -1.34 6.71 31.65 0.21 -1.13 16 21 C 0.10 1.05 7.78 86.83 0.68 1.73 16 22 N -0.74 -16.19 6.24 -459.81 -2.87 -19.06 16 23 C 0.50 17.00 7.43 87.89 0.65 17.65 16 24 O -0.56 -28.25 16.22 16.62 0.27 -27.98 16 25 N -0.51 -31.11 5.74 -186.36 -1.07 -32.18 16 26 H 0.27 16.43 8.29 -92.71 -0.77 15.66 16 27 H 0.10 5.12 8.06 -2.90 -0.02 5.10 16 28 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 29 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.42 11.68 8.70 -92.71 -0.81 10.87 16 31 H 0.14 2.07 8.10 -2.39 -0.02 2.06 16 32 H 0.11 2.10 8.12 -2.39 -0.02 2.08 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.13 0.59 7.87 -2.38 -0.02 0.58 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.41 8.26 8.96 -92.71 -0.83 7.43 16 Total: -1.00 -94.98 313.33 1.49 -93.49 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.51 Total: 29.70 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.95 Total: 2.84 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -5.40 Total: -121.40 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: 0.43 Total: -51.42 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -94.98 1.49 -93.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.981 kcal (2) G-P(sol) polarization free energy of solvation -94.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds