Wall clock time and date at job start Tue Mar 31 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86801 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47334 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46906 * 299.99822 * 3 2 1 6 6 H 1.48493 * 109.47332 * 59.99669 * 3 2 1 7 7 C 1.40033 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.41331 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.40618 * 119.79153 * 180.26818 * 9 7 2 11 11 C 1.38301 * 119.13020 * 180.29555 * 10 9 7 12 12 C 1.38695 * 118.66809 * 359.44380 * 11 10 9 13 13 C 1.39630 * 119.50043 * 0.27136 * 12 11 10 14 14 N 1.39262 * 119.57639 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99914 * 174.67291 * 14 13 12 16 16 O 1.21266 * 120.00167 * 5.15766 * 15 14 13 17 17 C 1.50699 * 119.99917 * 185.15205 * 15 14 13 18 18 C 1.53003 * 109.47179 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.42976 * 307.53824 * 18 17 15 20 20 C 1.54623 * 110.48622 * 184.99926 * 18 17 15 21 21 C 1.54482 * 101.76699 * 216.52124 * 20 18 17 22 22 N 1.46769 * 105.46817 * 25.41412 * 21 20 18 23 23 C 1.34415 * 111.30414 * 342.98851 * 22 21 20 24 24 O 1.21280 * 124.94301 * 180.40883 * 23 22 21 25 25 N 1.31930 * 120.84547 * 0.02573 * 13 12 11 26 26 H 0.97005 * 119.99811 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.43147 * 0.04310 * 10 9 7 28 28 H 1.08003 * 120.66711 * 179.71754 * 11 10 9 29 29 H 1.08003 * 120.25105 * 180.30038 * 12 11 10 30 30 H 0.97003 * 120.00564 * 354.67937 * 14 13 12 31 31 H 1.09011 * 109.47372 * 299.99965 * 17 15 14 32 32 H 1.08998 * 109.47393 * 60.00037 * 17 15 14 33 33 H 1.08997 * 110.97068 * 334.63760 * 20 18 17 34 34 H 1.09000 * 110.96914 * 98.40455 * 20 18 17 35 35 H 1.08995 * 110.25032 * 144.41509 * 21 20 18 36 36 H 1.09003 * 110.24371 * 266.33599 * 21 20 18 37 37 H 0.97002 * 124.34226 * 162.96239 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0083 -3.6519 0.0068 11 6 1.3030 -4.8415 0.0005 12 6 -0.0831 -4.7933 0.0000 13 6 -0.7280 -3.5549 0.0000 14 7 -2.1197 -3.5046 -0.0010 15 6 -2.7513 -2.3189 0.1074 16 8 -2.1111 -1.2890 0.1117 17 6 -4.2531 -2.2729 0.2232 18 6 -4.7120 -0.8174 0.3317 19 1 -4.1734 -0.3072 1.1302 20 6 -6.2370 -0.7477 0.5772 21 6 -6.6311 0.5018 -0.2413 22 7 -5.6061 0.6257 -1.2845 23 6 -4.5151 -0.1005 -0.9858 24 8 -3.5180 -0.1708 -1.6727 25 7 -0.0358 -2.4318 0.0001 26 1 -0.4850 0.8401 0.0004 27 1 3.0883 -3.6561 0.0123 28 1 1.8212 -5.7891 0.0005 29 1 -0.6593 -5.7068 0.0000 30 1 -2.6346 -4.3229 -0.0797 31 1 -4.6999 -2.7294 -0.6602 32 1 -4.5659 -2.8201 1.1124 33 1 -6.7350 -1.6381 0.1937 34 1 -6.4557 -0.6055 1.6355 35 1 -7.6135 0.3629 -0.6925 36 1 -6.6309 1.3859 0.3963 37 1 -5.7037 1.1624 -2.0866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:17 Heat of formation + Delta-G solvation = -36.761336 kcal Electronic energy + Delta-G solvation = -23167.601608 eV Core-core repulsion = 19716.622691 eV Total energy + Delta-G solvation = -3450.978917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.48803 -40.55193 -39.02327 -37.24091 -35.84783 -34.75127 -33.77968 -32.18393 -31.04818 -29.61582 -27.56779 -26.61179 -23.75436 -23.01492 -22.65484 -21.22806 -20.36380 -19.49049 -18.18400 -17.93308 -17.61168 -17.22257 -16.45637 -16.24581 -15.90456 -15.57937 -15.48704 -14.81649 -14.63204 -14.56365 -14.38209 -13.83335 -13.74427 -13.42857 -13.21521 -12.95148 -12.72572 -12.59790 -12.53010 -12.32371 -12.20759 -11.79926 -11.74357 -11.43947 -10.81617 -10.64521 -10.36215 -9.93148 -9.86271 -8.98668 -8.73375 -8.01111 -6.40050 0.96851 1.28864 1.34849 1.48941 1.50768 1.77575 2.24838 2.35435 2.47545 2.58058 3.03070 3.54054 3.60838 3.91104 4.06018 4.11461 4.37007 4.39861 4.51103 4.58093 4.72320 4.79982 4.84420 4.93622 4.96888 4.97864 5.12431 5.16050 5.29940 5.32377 5.71317 5.93699 5.94883 6.07870 6.15710 6.17797 6.43219 6.80795 6.94218 7.12531 7.48196 7.91982 8.41337 8.59173 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.006217 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.211681 B = 4502.920837 C = 6086.706602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.678 5.678 2 C 0.007 3.993 3 Si 0.971 3.029 4 H -0.250 1.250 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.235 3.765 10 C -0.334 4.334 11 C -0.035 4.035 12 C -0.349 4.349 13 C 0.349 3.651 14 N -0.662 5.662 15 C 0.442 3.558 16 O -0.436 6.436 17 C -0.106 4.106 18 C -0.108 4.108 19 H 0.092 0.908 20 C -0.114 4.114 21 C 0.098 3.902 22 N -0.736 5.736 23 C 0.498 3.502 24 O -0.563 6.563 25 N -0.507 5.507 26 H 0.265 0.735 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.418 0.582 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.197 -1.769 2.776 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.296 5.296 2 C -0.219 4.219 3 Si 0.792 3.208 4 H -0.173 1.173 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.102 0.898 9 C 0.110 3.890 10 C -0.357 4.357 11 C -0.059 4.059 12 C -0.375 4.375 13 C 0.110 3.890 14 N -0.312 5.312 15 C 0.226 3.774 16 O -0.300 6.300 17 C -0.146 4.146 18 C -0.130 4.130 19 H 0.110 0.890 20 C -0.151 4.151 21 C -0.025 4.025 22 N -0.392 5.392 23 C 0.285 3.715 24 O -0.439 6.439 25 N -0.227 5.227 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.255 0.745 31 H 0.122 0.878 32 H 0.154 0.846 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -18.902 -0.100 2.557 19.074 hybrid contribution 1.034 -0.164 -0.663 1.239 sum -17.868 -0.264 1.893 17.970 Atomic orbital electron populations 1.70559 1.07034 1.27467 1.24585 1.27060 0.96044 1.03975 0.94843 0.85327 0.79800 0.77424 0.78203 1.17349 1.20270 1.19289 1.19892 0.94313 0.90489 1.45183 0.89759 1.18916 0.88164 0.93369 0.88587 1.21784 0.99074 0.93927 1.20935 1.21024 0.93647 0.97212 0.94050 1.20991 0.95169 0.95806 1.25499 1.19246 0.85704 0.90949 0.93082 1.43504 1.03304 1.10752 1.73671 1.21886 0.92000 0.84169 0.79347 1.91173 1.66903 1.32101 1.39860 1.21553 0.89752 0.96970 1.06362 1.21721 1.00067 0.95653 0.95562 0.88995 1.22774 0.89946 0.99169 1.03200 1.22331 0.91810 0.99041 0.89305 1.46355 1.17842 1.49746 1.25278 1.21474 0.82053 0.79819 0.88191 1.90883 1.31707 1.64580 1.56761 1.68710 1.07169 1.25533 1.21270 0.92458 0.87963 0.84588 0.85038 0.74500 0.87801 0.84627 0.87500 0.86515 0.87214 0.90262 0.75290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -42.36 8.99 21.84 0.20 -42.17 16 2 C 0.01 0.39 5.50 85.29 0.47 0.86 16 3 Si 0.97 44.10 29.56 68.60 2.03 46.13 16 4 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.47 -28.51 9.14 23.47 0.21 -28.30 16 8 H 0.08 4.82 7.85 -2.91 -0.02 4.79 16 9 C 0.24 14.53 6.55 40.21 0.26 14.79 16 10 C -0.33 -18.02 9.83 22.87 0.22 -17.80 16 11 C -0.04 -1.63 10.15 22.39 0.23 -1.40 16 12 C -0.35 -15.89 9.95 22.72 0.23 -15.66 16 13 C 0.35 18.11 7.43 133.23 0.99 19.10 16 14 N -0.66 -27.16 5.38 -308.39 -1.66 -28.82 16 15 C 0.44 18.68 7.25 87.66 0.64 19.32 16 16 O -0.44 -23.82 9.82 17.49 0.17 -23.65 16 17 C -0.11 -2.71 5.09 29.85 0.15 -2.56 16 18 C -0.11 -2.75 2.54 -10.80 -0.03 -2.78 16 19 H 0.09 2.81 7.90 -2.39 -0.02 2.79 16 20 C -0.11 -1.31 6.70 31.65 0.21 -1.10 16 21 C 0.10 1.15 7.78 86.83 0.68 1.83 16 22 N -0.74 -16.36 6.24 -459.80 -2.87 -19.23 16 23 C 0.50 16.80 7.70 87.90 0.68 17.48 16 24 O -0.56 -27.40 15.63 17.44 0.27 -27.12 16 25 N -0.51 -31.19 5.74 -186.37 -1.07 -32.26 16 26 H 0.26 15.95 8.29 -92.70 -0.77 15.18 16 27 H 0.10 5.15 8.06 -2.91 -0.02 5.12 16 28 H 0.14 5.06 8.06 -2.91 -0.02 5.04 16 29 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 30 H 0.42 12.42 8.70 -92.71 -0.81 11.61 16 31 H 0.10 2.26 8.12 -2.38 -0.02 2.24 16 32 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.11 0.78 7.91 -2.39 -0.02 0.76 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.41 8.28 8.96 -92.71 -0.83 7.45 16 Total: -1.00 -93.35 312.77 1.50 -91.86 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.51 Total: 31.49 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.94 Total: 3.77 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -5.40 Total: -122.48 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: 0.44 Total: -50.77 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -93.35 1.50 -91.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.096 kcal (2) G-P(sol) polarization free energy of solvation -93.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds