Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 110.21324 * 2 1 4 4 O 1.21271 * 120.00176 * 95.70668 * 3 2 1 5 5 N 1.34784 * 120.00407 * 275.70385 * 3 2 1 6 6 C 1.39264 * 120.00122 * 185.16101 * 5 3 2 7 7 C 1.39668 * 119.57350 * 174.69268 * 6 5 3 8 8 C 1.38656 * 119.49346 * 179.97438 * 7 6 5 9 9 C 1.38350 * 118.67128 * 359.74474 * 8 7 6 10 10 C 1.40571 * 119.12693 * 0.51737 * 9 8 7 11 11 C 1.41334 * 119.78714 * 179.74714 * 10 9 8 12 12 H 1.07997 * 120.00158 * 0.02562 * 11 10 9 13 13 C 1.40036 * 120.00319 * 179.72557 * 11 10 9 14 14 N 1.30742 * 119.99284 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00212 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47139 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47035 * 119.99789 * 15 13 11 18 18 H 1.48495 * 109.47411 * 239.99935 * 15 13 11 19 19 N 1.31911 * 119.57597 * 354.70953 * 6 5 3 20 20 C 1.54478 * 110.24848 * 121.93372 * 2 1 3 21 21 C 1.54622 * 101.76325 * 144.50445 * 20 2 1 22 22 C 1.51275 * 104.19950 * 335.19948 * 21 20 2 23 23 O 1.21281 * 124.94974 * 196.25658 * 22 21 20 24 24 N 1.34623 * 110.14814 * 16.23502 * 22 21 20 25 25 H 1.08999 * 109.47015 * 59.29774 * 1 2 3 26 26 H 1.09003 * 109.46715 * 179.29794 * 1 2 3 27 27 H 1.09001 * 109.46823 * 299.29887 * 1 2 3 28 28 H 0.96998 * 119.99605 * 5.15606 * 5 3 2 29 29 H 1.07993 * 120.25630 * 359.97099 * 7 6 5 30 30 H 1.08004 * 120.66348 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.43169 * 180.24497 * 9 8 7 32 32 H 0.97001 * 119.99368 * 180.02562 * 14 13 11 33 33 H 1.09006 * 110.96538 * 262.62451 * 20 2 1 34 34 H 1.08998 * 110.96735 * 26.37943 * 20 2 1 35 35 H 1.09001 * 110.48618 * 93.88218 * 21 20 2 36 36 H 1.09006 * 110.48576 * 216.52200 * 21 20 2 37 37 H 0.97000 * 124.46912 * 180.46170 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3582 1.9471 1.0450 5 7 2.1747 2.0867 -1.1614 6 6 2.7555 3.3524 -1.1746 7 6 2.9813 3.9946 -2.3941 8 6 3.5592 5.2550 -2.4053 9 6 3.8916 5.8434 -1.1981 10 6 3.6442 5.1433 -0.0045 11 6 3.9833 5.7291 1.2362 12 1 4.4306 6.7117 1.2653 13 6 3.7336 5.0381 2.4284 14 7 3.1872 3.8509 2.3935 15 14 4.1824 5.8120 4.0681 16 1 4.7834 7.1500 3.8361 17 1 2.9597 5.9563 4.8985 18 1 5.1603 4.9452 4.7735 19 7 3.0857 3.9291 -0.0351 20 6 2.0647 -0.7666 1.2300 21 6 3.3300 -1.4433 0.6541 22 6 3.0549 -1.5427 -0.8301 23 8 3.6618 -2.2532 -1.6032 24 7 2.0379 -0.7281 -1.1687 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0276 -0.0126 27 1 -0.3633 0.5029 0.8962 28 1 1.8595 1.6891 -1.9881 29 1 2.7079 3.5133 -3.3214 30 1 3.7418 5.7690 -3.3374 31 1 4.3394 6.8259 -1.1734 32 1 3.0138 3.3724 3.2192 33 1 2.3223 -0.0795 2.0361 34 1 1.3442 -1.5109 1.5691 35 1 4.2099 -0.8269 0.8385 36 1 3.4614 -2.4360 1.0850 37 1 1.6857 -0.6342 -2.0676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882469180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = -35.120795 kcal Electronic energy + Delta-G solvation = -23390.688844 eV Core-core repulsion = 19939.781066 eV Total energy + Delta-G solvation = -3450.907777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10727 -40.52670 -39.28757 -37.40717 -35.99786 -34.89745 -32.34822 -32.23322 -31.89909 -30.75143 -27.53280 -25.97375 -24.74305 -23.34250 -22.53895 -21.74509 -20.68340 -19.77893 -18.70847 -17.96258 -17.79999 -16.50399 -16.48245 -16.29852 -15.94722 -15.51568 -15.48986 -15.08045 -14.79295 -14.64425 -14.38116 -13.95382 -13.74805 -13.54387 -13.33236 -13.08539 -12.87961 -12.74569 -12.55442 -12.34550 -12.09722 -11.98288 -11.75676 -11.51137 -11.26370 -11.02796 -10.87602 -10.13027 -9.90981 -9.08781 -8.84936 -8.06615 -6.42137 0.87955 1.22080 1.42264 1.43511 1.51588 1.55684 1.90561 2.19460 2.27650 2.38170 2.98561 3.23898 3.50513 3.68452 3.85657 4.03460 4.12343 4.34312 4.36744 4.64881 4.71066 4.79524 4.80533 4.88945 4.94217 4.99564 5.02393 5.14106 5.18575 5.30156 5.62400 5.67381 5.81604 5.90483 5.91139 6.15337 6.34034 6.69663 6.80745 7.07152 7.13341 7.59282 8.30876 8.56467 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.006049 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.804032 B = 4627.486281 C = 5663.403436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 C 0.462 3.538 4 O -0.443 6.443 5 N -0.651 5.651 6 C 0.349 3.651 7 C -0.351 4.351 8 C -0.035 4.035 9 C -0.330 4.330 10 C 0.236 3.764 11 C -0.463 4.463 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.687 5.687 15 Si 0.974 3.026 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.270 1.270 19 N -0.503 5.503 20 C -0.108 4.108 21 C -0.155 4.155 22 C 0.522 3.478 23 O -0.576 6.576 24 N -0.707 5.707 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.414 0.586 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.273 0.727 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -9.751 -1.458 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.062 3.938 3 C 0.243 3.757 4 O -0.308 6.308 5 N -0.299 5.299 6 C 0.110 3.890 7 C -0.377 4.377 8 C -0.059 4.059 9 C -0.353 4.353 10 C 0.111 3.889 11 C -0.494 4.494 12 H 0.102 0.898 13 C -0.212 4.212 14 N -0.306 5.306 15 Si 0.795 3.205 16 H -0.182 1.182 17 H -0.193 1.193 18 H -0.195 1.195 19 N -0.223 5.223 20 C -0.145 4.145 21 C -0.195 4.195 22 C 0.310 3.690 23 O -0.456 6.456 24 N -0.364 5.364 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.251 0.749 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.868 -10.398 0.014 12.462 hybrid contribution 0.299 1.029 -1.197 1.607 sum -6.569 -9.369 -1.184 11.504 Atomic orbital electron populations 1.22042 0.88653 1.05224 1.04128 1.21355 0.97809 0.86894 0.87719 1.21793 0.80295 0.89030 0.84549 1.91161 1.41855 1.67447 1.30300 1.43363 1.60182 1.15063 1.11336 1.19135 0.92247 0.86462 0.91118 1.20965 1.20360 1.00217 0.96111 1.21019 0.93810 0.93925 0.97146 1.21809 1.16772 1.02764 0.93965 1.18870 0.88663 0.87917 0.93456 1.19919 1.35794 1.03104 0.90574 0.89849 1.26965 0.94827 0.95513 1.03893 1.70479 1.22327 1.08802 1.28991 0.85286 0.78680 0.79326 0.77206 1.18221 1.19293 1.19533 1.68659 1.18419 1.11159 1.24034 1.22686 0.96642 0.99707 0.95513 1.22400 1.00323 1.05025 0.91758 1.21282 0.78323 0.77619 0.91770 1.90720 1.53049 1.42994 1.58806 1.46292 1.35801 1.42767 1.11493 0.90913 0.87893 0.90505 0.74895 0.85526 0.84814 0.87873 0.91573 0.88965 0.85532 0.89361 0.85324 0.74077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.79 71.98 0.63 -1.76 16 2 C 0.15 3.58 1.11 3.31 0.00 3.59 16 3 C 0.46 16.72 6.70 87.65 0.59 17.31 16 4 O -0.44 -20.63 11.43 -3.00 -0.03 -20.67 16 5 N -0.65 -23.92 5.26 -308.37 -1.62 -25.54 16 6 C 0.35 16.59 7.43 133.25 0.99 17.58 16 7 C -0.35 -15.06 9.95 22.72 0.23 -14.83 16 8 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 9 C -0.33 -16.69 9.83 22.87 0.22 -16.47 16 10 C 0.24 13.48 6.55 40.19 0.26 13.74 16 11 C -0.46 -25.94 9.14 23.47 0.21 -25.73 16 12 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 13 C 0.01 0.73 5.50 85.29 0.47 1.20 16 14 N -0.69 -37.53 8.99 21.84 0.20 -37.33 16 15 Si 0.97 39.39 29.56 68.60 2.03 41.42 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 19 N -0.50 -28.13 5.74 -186.37 -1.07 -29.20 16 20 C -0.11 -2.30 6.14 31.65 0.19 -2.11 16 21 C -0.16 -3.64 6.85 30.58 0.21 -3.43 16 22 C 0.52 14.41 8.44 87.86 0.74 15.15 16 23 O -0.58 -20.29 18.03 -3.03 -0.05 -20.35 16 24 N -0.71 -15.61 5.00 -423.09 -2.12 -17.73 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.41 11.51 8.15 -92.71 -0.76 10.75 16 29 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.27 13.80 8.29 -92.71 -0.77 13.04 16 33 H 0.09 2.48 6.89 -2.38 -0.02 2.46 16 34 H 0.13 1.74 7.91 -2.39 -0.02 1.72 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.42 7.47 8.81 -92.71 -0.82 6.65 16 Total: -1.00 -76.02 314.70 1.86 -74.16 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.45 Total: 32.32 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 4.98 Total: 2.93 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.61 Total: -109.80 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.09 Total: -41.01 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -76.02 1.86 -74.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882469180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.034 kcal (2) G-P(sol) polarization free energy of solvation -76.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds