Wall clock time and date at job start Tue Mar 31 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46756 * 124.35414 * 2 1 4 4 C 1.54474 * 105.47700 * 162.98108 * 3 2 1 5 5 C 1.54633 * 101.76306 * 25.41772 * 4 3 2 6 6 H 1.09005 * 110.48445 * 94.00948 * 5 4 3 7 7 C 1.50698 * 110.48590 * 216.51951 * 5 4 3 8 8 O 1.21268 * 120.00145 * 359.73220 * 7 5 4 9 9 N 1.34776 * 120.00063 * 179.97438 * 7 5 4 10 10 C 1.39263 * 120.00277 * 174.92804 * 9 7 5 11 11 C 1.39670 * 119.57597 * 185.48423 * 10 9 7 12 12 C 1.38658 * 119.49619 * 179.77000 * 11 10 9 13 13 C 1.38353 * 118.66693 * 0.49319 * 12 11 10 14 14 C 1.40574 * 119.12745 * 359.74828 * 13 12 11 15 15 C 1.41342 * 119.78488 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00154 * 359.97438 * 15 14 13 17 17 C 1.40029 * 119.99885 * 179.97438 * 15 14 13 18 18 N 1.30744 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99719 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47257 * 60.00437 * 19 17 15 21 21 H 1.48501 * 109.46830 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47317 * 300.00235 * 19 17 15 23 23 N 1.31903 * 119.57574 * 5.75113 * 10 9 7 24 24 C 1.34418 * 124.34327 * 179.97438 * 2 1 3 25 25 O 1.21284 * 124.94853 * 0.44332 * 24 2 1 26 26 H 1.08997 * 109.47244 * 89.99959 * 1 2 3 27 27 H 1.09002 * 109.47433 * 210.00273 * 1 2 3 28 28 H 1.08999 * 109.47043 * 329.99913 * 1 2 3 29 29 H 1.09007 * 110.24322 * 43.98184 * 3 2 1 30 30 H 1.09002 * 110.24266 * 281.99008 * 3 2 1 31 31 H 1.08991 * 110.97329 * 267.30030 * 4 3 2 32 32 H 1.09002 * 110.99941 * 143.54971 * 4 3 2 33 33 H 0.97001 * 119.99788 * 354.93780 * 9 7 5 34 34 H 1.08001 * 120.25690 * 0.02562 * 11 10 9 35 35 H 1.07998 * 120.66763 * 180.22272 * 12 11 10 36 36 H 1.07999 * 120.43463 * 179.77348 * 13 12 11 37 37 H 0.96992 * 119.99945 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6897 -0.7380 0.0101 6 1 4.1215 -0.8534 -0.9841 7 6 4.4403 -1.5787 1.0106 8 8 4.9500 -1.0574 1.9796 9 7 4.5492 -2.9093 0.8258 10 6 5.3304 -3.6709 1.6913 11 6 5.5306 -5.0275 1.4261 12 6 6.3126 -5.7832 2.2864 13 6 6.8658 -5.1668 3.3946 14 6 6.6229 -3.7990 3.6094 15 6 7.1817 -3.1552 4.7368 16 1 7.7927 -3.7141 5.4302 17 6 6.9431 -1.7927 4.9548 18 7 6.2031 -1.1162 4.1157 19 14 7.6810 -0.9421 6.4452 20 1 9.1616 -1.0426 6.3900 21 1 7.2812 0.4881 6.4472 22 1 7.1862 -1.5956 7.6836 23 7 5.8673 -3.1030 2.7539 24 6 2.2233 -1.1099 0.0005 25 8 1.7945 -2.2443 -0.0067 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8984 1.9382 0.7102 30 1 2.3306 1.6428 -1.0004 31 1 3.8269 0.8446 1.5141 32 1 4.4758 1.3008 -0.0961 33 1 4.0836 -3.3364 0.0898 34 1 5.0831 -5.4836 0.5554 35 1 6.4828 -6.8328 2.0975 36 1 7.4765 -5.7291 4.0854 37 1 6.0375 -0.1725 4.2669 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:00 Heat of formation + Delta-G solvation = -2.542617 kcal Electronic energy + Delta-G solvation = -23101.590970 eV Core-core repulsion = 19652.095888 eV Total energy + Delta-G solvation = -3449.495082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72022 -38.85122 -37.33139 -36.37679 -34.06582 -32.94870 -32.70360 -30.26164 -29.24187 -27.73576 -26.79590 -25.46818 -22.97816 -21.55461 -20.97941 -20.07442 -18.98429 -17.74030 -16.98364 -16.68017 -16.06874 -15.88701 -15.03736 -14.66961 -14.38645 -14.16450 -13.83014 -13.61477 -13.34038 -13.12771 -12.95348 -12.70071 -12.51772 -12.30672 -11.98925 -11.84467 -11.56463 -11.11312 -11.01614 -10.93800 -10.61773 -10.43041 -9.92177 -9.82288 -9.59999 -9.02509 -8.96543 -8.81477 -7.91675 -7.18928 -6.90208 -6.10797 -4.35831 2.48391 2.78664 2.93442 3.11975 3.17134 3.19899 3.30916 3.68515 3.88407 4.08492 4.35714 4.49573 4.91461 4.96165 4.96952 5.12380 5.22265 5.28671 5.43725 5.54434 5.57000 5.86557 6.09034 6.16968 6.21197 6.39558 6.56592 6.74475 6.88792 6.90963 6.97229 7.27130 7.60834 7.67857 7.86674 8.09561 8.13543 8.24231 8.51989 8.77389 9.08688 9.25458 10.28664 10.51718 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.005708 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.262532 B = 4903.813478 C = 6241.258283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.625 5.625 3 C 0.103 3.897 4 C -0.116 4.116 5 C -0.150 4.150 6 H 0.126 0.874 7 C 0.490 3.510 8 O -0.402 6.402 9 N -0.655 5.655 10 C 0.372 3.628 11 C -0.352 4.352 12 C -0.037 4.037 13 C -0.305 4.305 14 C 0.272 3.728 15 C -0.428 4.428 16 H 0.081 0.919 17 C 0.059 3.941 18 N -0.659 5.659 19 Si 0.896 3.104 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.268 1.268 23 N -0.474 5.474 24 C 0.529 3.471 25 O -0.520 6.520 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.405 0.595 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 7.896 -9.197 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.360 5.360 3 C -0.020 4.020 4 C -0.154 4.154 5 C -0.175 4.175 6 H 0.144 0.856 7 C 0.270 3.730 8 O -0.266 6.266 9 N -0.302 5.302 10 C 0.134 3.866 11 C -0.378 4.378 12 C -0.061 4.061 13 C -0.328 4.328 14 C 0.147 3.853 15 C -0.458 4.458 16 H 0.100 0.900 17 C -0.169 4.169 18 N -0.278 5.278 19 Si 0.721 3.279 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.192 1.192 23 N -0.193 5.193 24 C 0.315 3.685 25 O -0.395 6.395 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.239 0.761 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.040 8.885 -8.352 14.606 hybrid contribution 0.079 -0.735 -0.106 0.747 sum -7.961 8.150 -8.459 14.190 Atomic orbital electron populations 1.21528 0.78029 1.03226 1.01644 1.48099 1.06458 1.07428 1.73999 1.22177 0.90961 0.87208 1.01637 1.22590 0.95555 0.92100 1.05145 1.22277 0.94381 0.98119 1.02676 0.85608 1.19857 0.82981 0.82928 0.87245 1.91147 1.40260 1.70207 1.24952 1.43322 1.48518 1.07261 1.31061 1.18623 0.90770 0.87082 0.90128 1.20530 1.16638 0.94196 1.06445 1.20568 0.94716 0.97029 0.93773 1.21621 1.11987 0.97207 1.02004 1.18379 0.88137 0.87764 0.91064 1.19528 1.26244 0.93965 1.06089 0.90047 1.26162 0.95364 0.98171 0.97243 1.70320 1.20852 1.07918 1.28702 0.86586 0.80278 0.78527 0.82552 1.19195 1.20442 1.19236 1.68681 1.13559 1.34981 1.02094 1.20488 0.88287 0.84512 0.75167 1.90735 1.78256 1.20837 1.49716 0.92687 0.90664 0.91071 0.90166 0.91082 0.87635 0.88801 0.76057 0.88983 0.88598 0.88575 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 10.96 59.85 0.66 1.58 16 2 N -0.62 -7.53 3.33 -180.29 -0.60 -8.14 16 3 C 0.10 0.95 7.35 -3.13 -0.02 0.93 16 4 C -0.12 -1.38 6.48 -25.10 -0.16 -1.54 16 5 C -0.15 -2.20 3.33 -91.78 -0.31 -2.50 16 6 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 7 C 0.49 10.17 7.08 -10.99 -0.08 10.09 16 8 O -0.40 -9.93 11.27 5.57 0.06 -9.87 16 9 N -0.66 -14.16 5.17 -11.40 -0.06 -14.21 16 10 C 0.37 9.58 7.43 -154.99 -1.15 8.42 16 11 C -0.35 -8.40 9.95 -38.89 -0.39 -8.79 16 12 C -0.04 -0.87 10.15 -39.38 -0.40 -1.27 16 13 C -0.31 -7.91 9.83 -38.66 -0.38 -8.29 16 14 C 0.27 7.82 6.55 -85.00 -0.56 7.26 16 15 C -0.43 -11.93 9.14 -37.73 -0.34 -12.28 16 16 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 17 C 0.06 1.57 5.50 -17.34 -0.10 1.48 16 18 N -0.66 -18.19 9.00 55.55 0.50 -17.69 16 19 Si 0.90 19.30 29.56 -169.99 -5.02 14.28 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 N -0.47 -13.65 5.74 -10.26 -0.06 -13.71 16 24 C 0.53 8.24 7.44 -10.86 -0.08 8.15 16 25 O -0.52 -9.80 16.59 5.55 0.09 -9.71 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 1.55 7.00 -51.93 -0.36 1.19 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 7.60 8.02 -40.82 -0.33 7.27 16 34 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -34.98 315.28 -8.10 -43.08 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.45 Total: 7.96 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -3.31 Total: 3.25 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.22 Total: -53.75 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.15 Total: -19.57 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.98 -8.10 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.540 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds