Wall clock time and date at job start Tue Mar 31 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46756 * 124.35414 * 2 1 4 4 C 1.54474 * 105.47700 * 162.98108 * 3 2 1 5 5 C 1.54633 * 101.76306 * 25.41772 * 4 3 2 6 6 H 1.09005 * 110.48445 * 94.00948 * 5 4 3 7 7 C 1.50698 * 110.48590 * 216.51951 * 5 4 3 8 8 O 1.21268 * 120.00145 * 359.73220 * 7 5 4 9 9 N 1.34776 * 120.00063 * 179.97438 * 7 5 4 10 10 C 1.39263 * 120.00277 * 174.92804 * 9 7 5 11 11 C 1.39670 * 119.57597 * 185.48423 * 10 9 7 12 12 C 1.38658 * 119.49619 * 179.77000 * 11 10 9 13 13 C 1.38353 * 118.66693 * 0.49319 * 12 11 10 14 14 C 1.40574 * 119.12745 * 359.74828 * 13 12 11 15 15 C 1.41342 * 119.78488 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00154 * 359.97438 * 15 14 13 17 17 C 1.40029 * 119.99885 * 179.97438 * 15 14 13 18 18 N 1.30744 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99719 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47257 * 60.00437 * 19 17 15 21 21 H 1.48501 * 109.46830 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47317 * 300.00235 * 19 17 15 23 23 N 1.31903 * 119.57574 * 5.75113 * 10 9 7 24 24 C 1.34418 * 124.34327 * 179.97438 * 2 1 3 25 25 O 1.21284 * 124.94853 * 0.44332 * 24 2 1 26 26 H 1.08997 * 109.47244 * 89.99959 * 1 2 3 27 27 H 1.09002 * 109.47433 * 210.00273 * 1 2 3 28 28 H 1.08999 * 109.47043 * 329.99913 * 1 2 3 29 29 H 1.09007 * 110.24322 * 43.98184 * 3 2 1 30 30 H 1.09002 * 110.24266 * 281.99008 * 3 2 1 31 31 H 1.08991 * 110.97329 * 267.30030 * 4 3 2 32 32 H 1.09002 * 110.99941 * 143.54971 * 4 3 2 33 33 H 0.97001 * 119.99788 * 354.93780 * 9 7 5 34 34 H 1.08001 * 120.25690 * 0.02562 * 11 10 9 35 35 H 1.07998 * 120.66763 * 180.22272 * 12 11 10 36 36 H 1.07999 * 120.43463 * 179.77348 * 13 12 11 37 37 H 0.96992 * 119.99945 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7010 0.7486 0.4357 5 6 3.6897 -0.7380 0.0101 6 1 4.1215 -0.8534 -0.9841 7 6 4.4403 -1.5787 1.0106 8 8 4.9500 -1.0574 1.9796 9 7 4.5492 -2.9093 0.8258 10 6 5.3304 -3.6709 1.6913 11 6 5.5306 -5.0275 1.4261 12 6 6.3126 -5.7832 2.2864 13 6 6.8658 -5.1668 3.3946 14 6 6.6229 -3.7990 3.6094 15 6 7.1817 -3.1552 4.7368 16 1 7.7927 -3.7141 5.4302 17 6 6.9431 -1.7927 4.9548 18 7 6.2031 -1.1162 4.1157 19 14 7.6810 -0.9421 6.4452 20 1 9.1616 -1.0426 6.3900 21 1 7.2812 0.4881 6.4472 22 1 7.1862 -1.5956 7.6836 23 7 5.8673 -3.1030 2.7539 24 6 2.2233 -1.1099 0.0005 25 8 1.7945 -2.2443 -0.0067 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8984 1.9382 0.7102 30 1 2.3306 1.6428 -1.0004 31 1 3.8269 0.8446 1.5141 32 1 4.4758 1.3008 -0.0961 33 1 4.0836 -3.3364 0.0898 34 1 5.0831 -5.4836 0.5554 35 1 6.4828 -6.8328 2.0975 36 1 7.4765 -5.7291 4.0854 37 1 6.0375 -0.1725 4.2669 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:59 Heat of formation + Delta-G solvation = -26.434286 kcal Electronic energy + Delta-G solvation = -23102.626990 eV Core-core repulsion = 19652.095888 eV Total energy + Delta-G solvation = -3450.531102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94669 -40.53743 -39.09982 -37.53117 -35.92026 -34.83581 -33.76943 -32.23085 -31.04579 -28.92856 -27.72612 -27.38538 -24.45145 -23.31460 -22.54711 -21.41913 -20.43821 -19.54538 -18.26475 -17.99926 -17.74428 -17.14074 -16.47825 -16.28848 -16.16910 -15.62164 -15.45594 -14.98475 -14.70578 -14.60780 -14.53386 -13.88392 -13.78463 -13.60971 -13.40763 -13.10882 -12.84921 -12.76033 -12.60702 -12.58004 -12.32113 -11.99022 -11.78774 -11.50341 -11.03311 -10.85676 -10.69693 -9.91014 -9.74485 -9.13175 -8.83473 -8.05223 -6.42327 0.87152 1.21500 1.34128 1.40815 1.52434 1.54336 1.88497 2.16029 2.27761 2.37932 2.98461 3.28986 3.41965 3.84058 3.98471 4.03850 4.20642 4.36345 4.36890 4.44256 4.65434 4.70090 4.74289 4.85127 4.88619 4.94359 5.01838 5.03984 5.22732 5.30500 5.51318 5.67065 5.83476 5.90997 5.96507 6.14631 6.34032 6.70281 6.81733 7.01055 7.07300 7.58635 8.31605 8.57636 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.005708 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.262532 B = 4903.813478 C = 6241.258283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.619 5.619 3 C 0.107 3.893 4 C -0.112 4.112 5 C -0.139 4.139 6 H 0.158 0.842 7 C 0.479 3.521 8 O -0.446 6.446 9 N -0.651 5.651 10 C 0.349 3.651 11 C -0.351 4.351 12 C -0.034 4.034 13 C -0.328 4.328 14 C 0.235 3.765 15 C -0.465 4.465 16 H 0.086 0.914 17 C 0.011 3.989 18 N -0.691 5.691 19 Si 0.978 3.022 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.263 1.263 23 N -0.505 5.505 24 C 0.518 3.482 25 O -0.565 6.565 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.416 0.584 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.107 0.893 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 9.311 -10.394 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.352 5.352 3 C -0.014 4.014 4 C -0.151 4.151 5 C -0.163 4.163 6 H 0.175 0.825 7 C 0.261 3.739 8 O -0.312 6.312 9 N -0.299 5.299 10 C 0.110 3.890 11 C -0.376 4.376 12 C -0.058 4.058 13 C -0.351 4.351 14 C 0.110 3.890 15 C -0.496 4.496 16 H 0.105 0.895 17 C -0.214 4.214 18 N -0.310 5.310 19 Si 0.798 3.202 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.188 1.188 23 N -0.225 5.225 24 C 0.304 3.696 25 O -0.444 6.444 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.253 0.747 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.735 10.326 -9.595 16.583 hybrid contribution 0.206 -1.229 0.155 1.256 sum -8.529 9.097 -9.441 15.640 Atomic orbital electron populations 1.21748 0.76407 1.03658 1.03118 1.48286 1.07649 1.07332 1.71983 1.22422 0.88433 0.86183 1.04366 1.22620 0.98555 0.90427 1.03452 1.22257 0.93449 0.98415 1.02226 0.82494 1.20868 0.82452 0.82770 0.87793 1.91136 1.42079 1.70891 1.27115 1.43438 1.47965 1.07845 1.30679 1.19164 0.91081 0.88539 0.90213 1.20968 1.15828 0.93659 1.07192 1.21019 0.93323 0.98923 0.92502 1.21817 1.13138 0.96636 1.03495 1.18915 0.88927 0.89315 0.91862 1.19890 1.27587 0.95326 1.06790 0.89546 1.27046 0.95605 0.98337 1.00461 1.70505 1.21883 1.08051 1.30549 0.85352 0.79411 0.77351 0.78060 1.18432 1.19470 1.18764 1.68667 1.14488 1.36129 1.03223 1.20640 0.88850 0.84762 0.75302 1.90703 1.78908 1.22625 1.52167 0.90673 0.92841 0.88050 0.88055 0.87210 0.90987 0.86090 0.74655 0.85806 0.84533 0.87510 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 10.96 127.77 1.40 2.91 16 2 N -0.62 -13.46 3.33 -842.91 -2.81 -16.27 16 3 C 0.11 1.58 7.35 86.83 0.64 2.22 16 4 C -0.11 -2.47 6.48 31.65 0.20 -2.27 16 5 C -0.14 -3.94 3.33 -11.54 -0.04 -3.98 16 6 H 0.16 3.39 8.14 -2.38 -0.02 3.37 16 7 C 0.48 20.29 7.08 87.66 0.62 20.91 16 8 O -0.45 -22.95 11.27 -2.99 -0.03 -22.99 16 9 N -0.65 -28.66 5.17 -308.38 -1.60 -30.26 16 10 C 0.35 18.32 7.43 133.25 0.99 19.31 16 11 C -0.35 -16.55 9.95 22.72 0.23 -16.32 16 12 C -0.03 -1.56 10.15 22.40 0.23 -1.33 16 13 C -0.33 -17.29 9.83 22.87 0.22 -17.07 16 14 C 0.24 14.06 6.55 40.20 0.26 14.32 16 15 C -0.47 -26.98 9.14 23.47 0.21 -26.76 16 16 H 0.09 4.68 7.85 -2.91 -0.02 4.65 16 17 C 0.01 0.60 5.50 85.29 0.47 1.07 16 18 N -0.69 -39.68 9.00 21.84 0.20 -39.48 16 19 Si 0.98 40.61 29.56 68.60 2.03 42.64 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 N -0.51 -30.23 5.74 -186.37 -1.07 -31.30 16 24 C 0.52 15.67 7.44 87.90 0.65 16.32 16 25 O -0.56 -21.42 16.59 -3.04 -0.05 -21.47 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.13 7.93 -2.39 -0.02 1.11 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 2.12 7.00 -2.39 -0.02 2.11 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.42 15.71 8.02 -92.71 -0.74 14.97 16 34 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 35 H 0.14 5.13 8.06 -2.91 -0.02 5.11 16 36 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 37 H 0.27 14.53 8.29 -92.71 -0.77 13.77 16 Total: -1.00 -81.31 315.28 3.12 -78.19 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.36 Total: 31.60 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.09 Total: 9.33 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.28 Total: -117.31 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.08 Total: -44.45 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -81.31 3.12 -78.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -81.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds