Wall clock time and date at job start Tue Mar 31 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46758 * 124.35278 * 2 1 4 4 C 1.54485 * 105.47557 * 197.03787 * 3 2 1 5 5 C 1.54632 * 101.76244 * 334.58664 * 4 3 2 6 6 H 1.09001 * 110.59679 * 266.06476 * 5 4 3 7 7 C 1.50692 * 110.48260 * 143.47483 * 5 4 3 8 8 O 1.21271 * 120.00450 * 3.49708 * 7 5 4 9 9 N 1.34783 * 120.00066 * 183.76925 * 7 5 4 10 10 C 1.39267 * 120.00103 * 174.56100 * 9 7 5 11 11 C 1.39672 * 119.57131 * 185.32852 * 10 9 7 12 12 C 1.38652 * 119.49468 * 179.77045 * 11 10 9 13 13 C 1.38344 * 118.66877 * 0.48965 * 12 11 10 14 14 C 1.40586 * 119.12929 * 359.75832 * 13 12 11 15 15 C 1.41340 * 119.78469 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99970 * 359.97165 * 15 14 13 17 17 C 1.40023 * 119.99644 * 179.97438 * 15 14 13 18 18 N 1.30748 * 119.99910 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47237 * 90.00012 * 19 17 15 21 21 H 1.48502 * 109.47077 * 210.00037 * 19 17 15 22 22 H 1.48497 * 109.46983 * 329.99982 * 19 17 15 23 23 N 1.31901 * 119.57533 * 5.60025 * 10 9 7 24 24 C 1.34419 * 124.34389 * 180.02562 * 2 1 3 25 25 O 1.21275 * 124.94930 * 359.60582 * 24 2 1 26 26 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46906 * 299.99916 * 1 2 3 28 28 H 1.09003 * 109.46570 * 59.99738 * 1 2 3 29 29 H 1.09000 * 110.24706 * 316.04257 * 3 2 1 30 30 H 1.08999 * 110.24622 * 78.03699 * 3 2 1 31 31 H 1.08992 * 110.96831 * 216.46698 * 4 3 2 32 32 H 1.08998 * 110.96391 * 92.70552 * 4 3 2 33 33 H 0.96999 * 119.99466 * 354.56221 * 9 7 5 34 34 H 1.07998 * 120.25464 * 0.02562 * 11 10 9 35 35 H 1.08003 * 120.66609 * 180.22360 * 12 11 10 36 36 H 1.07997 * 120.43808 * 179.76762 * 13 12 11 37 37 H 0.97002 * 119.99926 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7010 0.7487 -0.4362 5 6 3.6898 -0.7380 -0.0110 6 1 4.1203 -0.8556 0.9835 7 6 4.4399 -1.5784 -1.0119 8 8 4.9989 -1.0502 -1.9495 9 7 4.4849 -2.9178 -0.8682 10 6 5.0802 -3.7041 -1.8516 11 6 5.0237 -5.0959 -1.7491 12 6 5.6127 -5.8772 -2.7315 13 6 6.2516 -5.2484 -3.7852 14 6 6.2787 -3.8434 -3.8289 15 6 6.9272 -3.1867 -4.8993 16 1 7.4001 -3.7639 -5.6800 17 6 6.9564 -1.7876 -4.9475 18 7 6.3843 -1.0888 -4.0020 19 14 7.8140 -0.9194 -6.3619 20 1 6.8441 -0.6893 -7.4625 21 1 8.3477 0.3842 -5.8918 22 1 8.9319 -1.7630 -6.8555 23 7 5.6946 -3.1248 -2.8648 24 6 2.2234 -1.1099 -0.0005 25 8 1.7946 -2.2443 0.0058 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8983 1.9384 -0.7098 30 1 2.3310 1.6426 1.0004 31 1 4.4755 1.3008 0.0960 32 1 3.8264 0.8450 -1.5147 33 1 4.1027 -3.3340 -0.0798 34 1 4.5215 -5.5600 -0.9132 35 1 5.5772 -6.9550 -2.6730 36 1 6.7232 -5.8291 -4.5641 37 1 6.4043 -0.1196 -4.0356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:03 Heat of formation + Delta-G solvation = -2.296799 kcal Electronic energy + Delta-G solvation = -23133.587344 eV Core-core repulsion = 19684.102921 eV Total energy + Delta-G solvation = -3449.484422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71612 -38.84449 -37.32906 -36.36444 -34.05875 -32.94433 -32.69939 -30.25591 -29.23587 -27.72780 -26.78397 -25.46210 -22.97103 -21.54849 -20.97546 -20.05426 -18.99593 -17.72325 -16.98065 -16.68195 -16.06058 -15.91789 -14.99332 -14.65947 -14.37438 -14.19675 -13.80566 -13.61900 -13.31354 -13.15186 -12.95966 -12.68044 -12.49986 -12.26115 -11.98910 -11.81930 -11.57932 -11.13263 -11.01796 -10.91681 -10.59922 -10.42974 -9.90263 -9.82707 -9.59463 -9.02790 -8.95722 -8.80493 -7.91070 -7.18598 -6.89207 -6.10553 -4.35276 2.48988 2.79226 2.93691 3.11503 3.18259 3.21229 3.31086 3.72140 3.85606 4.08721 4.36215 4.50437 4.91099 4.96420 4.97700 5.16447 5.22161 5.29348 5.43536 5.54335 5.58485 5.86799 6.09387 6.17866 6.21007 6.40227 6.57689 6.75341 6.89378 6.91633 6.98300 7.27495 7.61547 7.68350 7.87520 8.10701 8.14392 8.24811 8.52650 8.77837 9.09276 9.25704 10.29063 10.52004 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.005754 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.768063 B = 4865.013872 C = 6182.425349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.625 5.625 3 C 0.103 3.897 4 C -0.115 4.115 5 C -0.150 4.150 6 H 0.126 0.874 7 C 0.490 3.510 8 O -0.402 6.402 9 N -0.654 5.654 10 C 0.373 3.627 11 C -0.351 4.351 12 C -0.037 4.037 13 C -0.305 4.305 14 C 0.272 3.728 15 C -0.428 4.428 16 H 0.082 0.918 17 C 0.059 3.941 18 N -0.659 5.659 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.264 1.264 23 N -0.474 5.474 24 C 0.528 3.472 25 O -0.519 6.519 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.404 0.596 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 7.785 9.438 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.360 5.360 3 C -0.020 4.020 4 C -0.153 4.153 5 C -0.175 4.175 6 H 0.144 0.856 7 C 0.269 3.731 8 O -0.266 6.266 9 N -0.300 5.300 10 C 0.135 3.865 11 C -0.377 4.377 12 C -0.061 4.061 13 C -0.328 4.328 14 C 0.146 3.854 15 C -0.459 4.459 16 H 0.100 0.900 17 C -0.169 4.169 18 N -0.278 5.278 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.188 1.188 23 N -0.194 5.194 24 C 0.315 3.685 25 O -0.394 6.394 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.594 8.801 8.747 14.548 hybrid contribution -0.037 -0.727 0.033 0.728 sum -7.632 8.074 8.781 14.161 Atomic orbital electron populations 1.21543 0.78082 1.03794 1.01290 1.48086 1.06464 1.07426 1.74047 1.22157 0.90922 0.87276 1.01638 1.22576 0.95548 0.92100 1.05058 1.22269 0.94376 0.98125 1.02687 0.85611 1.19866 0.83093 0.82934 0.87177 1.91150 1.38147 1.70125 1.27136 1.43291 1.57876 1.06202 1.22638 1.18615 0.91886 0.86609 0.89422 1.20535 1.19293 0.92357 1.05517 1.20566 0.94981 0.97095 0.93461 1.21621 1.12926 0.96028 1.02256 1.18388 0.88769 0.87746 0.90450 1.19555 1.29296 0.91306 1.05696 0.90016 1.26163 0.95706 0.98333 0.96732 1.70336 1.24909 1.06815 1.25748 0.86525 0.80293 0.79194 0.81969 1.19738 1.20345 1.18786 1.68679 1.13304 1.35637 1.01731 1.20503 0.88331 0.84538 0.75124 1.90737 1.78192 1.20791 1.49692 0.89909 0.92178 0.92102 0.90195 0.91081 0.88769 0.87734 0.76154 0.88967 0.88607 0.88582 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.14 59.85 0.67 1.58 16 2 N -0.62 -7.60 3.33 -180.29 -0.60 -8.20 16 3 C 0.10 0.96 7.35 -3.12 -0.02 0.93 16 4 C -0.11 -1.37 6.45 -25.09 -0.16 -1.53 16 5 C -0.15 -2.19 3.33 -91.78 -0.31 -2.50 16 6 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 7 C 0.49 10.13 7.12 -10.99 -0.08 10.05 16 8 O -0.40 -9.91 11.30 5.57 0.06 -9.85 16 9 N -0.65 -14.12 5.00 -11.40 -0.06 -14.17 16 10 C 0.37 9.62 7.43 -154.98 -1.15 8.47 16 11 C -0.35 -8.44 9.95 -38.89 -0.39 -8.83 16 12 C -0.04 -0.88 10.15 -39.39 -0.40 -1.28 16 13 C -0.31 -7.94 9.83 -38.66 -0.38 -8.32 16 14 C 0.27 7.83 6.55 -85.00 -0.56 7.28 16 15 C -0.43 -11.96 9.14 -37.73 -0.34 -12.30 16 16 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 17 C 0.06 1.57 5.50 -17.34 -0.10 1.48 16 18 N -0.66 -18.18 9.00 55.55 0.50 -17.68 16 19 Si 0.90 19.31 29.56 -169.99 -5.02 14.28 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 N -0.47 -13.68 5.74 -10.25 -0.06 -13.74 16 24 C 0.53 8.25 7.44 -10.86 -0.08 8.17 16 25 O -0.52 -9.80 16.32 5.56 0.09 -9.71 16 26 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.54 7.05 -51.93 -0.37 1.18 16 33 H 0.40 7.52 8.14 -40.82 -0.33 7.18 16 34 H 0.09 1.96 8.06 -52.49 -0.42 1.53 16 35 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.27 6.91 8.29 -40.82 -0.34 6.58 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -35.07 314.83 -8.08 -43.15 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.44 Total: 7.96 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.30 Total: 3.21 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.22 Total: -53.79 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.15 Total: -19.56 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.07 -8.08 -43.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.851 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds